G932397 (LOC106591067)


Basic Information

Item Value
gene id G932397
gene name LOC106591067
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 87164185 ~ 87167671 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1062723
ctgtacatgcctcctgtaaaaccctatcatcagttatcctgtacatgcctcctgtaaaaccctatcatcagttatcctgtacatgcctcctgtaaaaccCTATCATCAGTGAGCttgtacatgcctcctgtaaaaccctatcatcagttatcctgtacatgcctcctgtaaaaccctatcatcagttatcctgtacatgcctcctgtaaaaccctatcatcagttatcctgtacatgcctcctgtaaaaccctatcatcagttatcctgtacatgcctcctgtaaaaccctatcatcagttatcctgtacatgcctcctgtaaaaccCTATCATCAGTGAGcctgtacatgcctcctgtaaaaccctatcatcagttatcctgtaatgcctcctgtaaaaccCTATCATCAGTGAGcctgtacatgcctcctgtaaaaccctatcatcagttatcctgtaatgcctcctgtaaaaccCTATCATCAGTGAGcctgtacatgcctcctgtaaaaccctatcatcagttatcctgtacatgcctcctgtaaaaccCTATCATCAGTGAGcctgtacatgcctcctgtaaaaccctatcatcagttatcctgtacatgcctcctgtaaaaccctatcatcagttatcctgtacatgcctcctgtaaaaccCTATCATCAGTTATCCTGTACATACCTCCTGTAAAACCTTATCATCAGTTATcctgtacatgcctcctgtaaaaccCTATCATCAGTGAGCTTGTACATGCCTCCTGTTAAACCCTATCATCAGTTATcctgtacatgcctcctgtaaaaccCTATCATACCTTTACATCAGTTATCCGTACATGCCAAGTCAAAAAGGTTACTATTGAGAGGTCTATTTACTATGAAAGACAATTAAAACCAAAGCTTCTATTAATGCCGTCAAGGACCCTGTTTTCATTGAACCGTTGATCATCCTATCTTTCAACGCAGGTGAAAAAGGTTTTTGCTCAGACCTCAGGCTTCCGTCGTTCCATTGTCAACTCATTCAGGAGTGGATCTGTAGTTACCGACATGACCCTCGTGTTCGACAACCAAACTTCGGTTCCCAGCTCAAGCAACGCACAAGTAACTTTCACCAACAGTTCCACCTCCCTGAACATTCTATCAGGCAGCATCATTTTTGGGTCATCAACCACATCAGGAAGTGCTCCCCGACCCACTTCCTTCTCTCTGGCTGCCTTGCCTCTCAGTTTGGCTCTATTAATGGTACAGCTGCTGGCTAGCTAATAGCCTGGGACATAGCTGCTGTGGCTCTGCTAGCTACTAGGCTAGCTAATAGCCTGGGGCATAGCTGTTGTGGCTCTGCTAGCTGCTGGCTAACCAATAGCCTGAGGCATAGCTGATGTGGCTGATGAGGTTTAACCAATCTACAGTTTCTCATAGATACAgccttaaagctagaatccttagttgctacaccCATTTTTTtacttataaattaatgatatgtacccattgattctagaAGAATATAACATATGAATACCTCATGAgtctgtcgtaccccatcagaacccaaaatataagcttgttttaccccAATGTTTTCTAAACAATGCAAACAAACACTGTTCAGCTTTAAACCATGATTAAAACTATAAttctgatatcatggatggtcagtcctggcatccataggtctgtctatgaatttgagagtggtcacATTTTTATTACCAAAAAAAACATAGAACAGGTGTTAATTTGTTATTATTTCAGCTAATAAGGACTCTATCTTTAAGATGCATTAGCTGCTTAAAGCACAAATTCAATTTGAGAGTTATTATTTCAGTTAATAAGGACTCTATCTTTAAGATGCATTAGCTGCTTAAAGCACAAATTCAATTTGAGAGTTATTATTTCAGTTAATAAGGACTCCATCTTTAAGATGCATTAGCTGCTTAAAGCACAAATTCAATTTGAGAGTTATTATTTCCATACCACTTCCTCGTTCTGAACTTCTAATGCCAGtgggtgtggcttcgtgacagtgatcaagagcagctgctcaccgattgGACAGCTCCAATGCAGTGACCCCTCCGACCAGGATATGcatgtgtggtcagaactgatTTGATTGAAGCGAGGCCCTTATCTTTCAAATTACTATTATTTAACACTTTACCATATAACAGACTAAAATGAATTATGTAAATTATTAATTTGCAGCAGGTACAAAGCAACTTGCACACTATCagtgaatttaaaaaataataaaaaacctGAAAAAATTACAAAAACTTTCCACAATTTGTTTGCTTTTTAAAAACTCAAatcaTATTTCCCCCTTTAATTATTAACTGATGCAATTACAATTCAAATTCATCAAGACCGGGATGATATTTACTTTGAGTGATTTTGGGCATATCACTGAAAATGGGGACCACTTCAATGTTTTAAACTGTTGTAGAGCCTCTCCAGGTTTGTACTTGTCTTGTTATTATTAAATCTAATATATTATGCAACACTCGTA

Function

NR:

description
PREDICTED: mucin-12-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1062723 True 2525 lncRNA 0.40 6 87164185 87167671

Neighbor

gene id symbol gene type direction distance location
LOC110516832 wdr19 coding upstream 34536 87057752 ~ 87129649 (+)
LOC110511479 klhl5 coding upstream 110813 86997786 ~ 87054035 (+)
LOC110512499 LOC106594418 coding upstream 225154 86920572 ~ 86939031 (+)
LOC118936872 LOC106593007 coding upstream 247266 86882352 ~ 86916919 (+)
LOC118936871 NA coding upstream 343171 86820240 ~ 86821014 (+)
LOC118936497 lias coding downstream 223401 87391072 ~ 87402637 (+)
LOC118936875 LOC105009164 coding downstream 287393 87454878 ~ 87471566 (+)
LOC110519305 NA coding downstream 405996 87573667 ~ 87623897 (+)
LOC118936877 rhoh coding downstream 462260 87629931 ~ 87655775 (+)
nachra9 nachra9 coding downstream 507406 87675077 ~ 87696588 (+)
G932401 NA non-coding upstream 8843 87141901 ~ 87155342 (+)
G932390 NA non-coding upstream 38497 87123870 ~ 87125688 (+)
G932388 NA non-coding upstream 38710 87121032 ~ 87125475 (+)
G932389 NA non-coding upstream 39349 87121585 ~ 87124836 (+)
G932384 NA non-coding upstream 54017 87106248 ~ 87110168 (+)
G932421 NA non-coding downstream 21951 87189622 ~ 87193354 (+)
G932422 NA non-coding downstream 27848 87195519 ~ 87288556 (+)
G932428 NA non-coding downstream 40847 87208518 ~ 87210577 (+)
G932429 NA non-coding downstream 44346 87212017 ~ 87213680 (+)
G932430 NA non-coding downstream 48644 87216315 ~ 87216837 (+)
LOC110518842 tbc1d1 other upstream 412521 86704406 ~ 86830606 (+)
G932184 NA other upstream 688345 86441024 ~ 86475840 (+)
LOC110513338 LOC106595035 other upstream 960001 86201044 ~ 86209191 (+)
G932466 NA other downstream 212997 87379860 ~ 87390230 (+)
G932484 NA other downstream 237116 87404787 ~ 87406846 (+)
G932526 pds5a other downstream 346274 87513945 ~ 87531331 (+)

Expression


Co-expression Network