G932428


Basic Information

Item Value
gene id G932428
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 87208518 ~ 87210577 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1062790
atagtatagtgtgccCATCTAACCAGTGTGCCCATCTAACCCATCTAACCAGCTGGTCTGATGATAGTACTCTATAAACCATTCAATAGAGGTAAAATACTacagaccattcactagagGtaaagaactatagaccattcactagaggtaaagaactatagaactatagaccattcactagaggtatagaactatagaactatagaccattcactagaggtatagaactatagaactatagaccattcactagaggtatagaagtatagaccattcactagaggtatagaactatagaactatagaccCTTCACTAGAGGTATATAACtgtagaccattcactagaggtatagaAGTATAGACCCTTCACTagaggtatatacagtgccttgcgaaagtattctgcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaa
>TU1062788
CTAtataccattcactagaggtatagaactatagaccattcactagagGTATATAACTgaagaccattcactagaggtatagaactatagaccattcactagaggtaaaaactatagaactatagaccattcactagaggtaagaactatagaccattcactagaggtatagaactatagaccattcactagaggtaagaactatagaactatagaccattcactagaggtaagaactatagaactatagaccattcactagaggtatagaactatagaccattcactagaggtaagaactatagaactatagaccattcactagaggtaagaactatagaactatagaccattcactagaggtaagaactatagaactatagaccattcactagaggtaagaactatagaactatagaccattcactagaggtatagaagtatagaccattcactagaggtatagaactatagaactatagaccCTTCACTAGAGGTATATAACtgtagaccattcactagaggtatagaAGTATAGACCCTTCACTagaggtatatacagtgccttgcgaaagtattctgcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1062790 False 540 lncRNA 0.37 3 87208518 87210577
TU1062788 True 717 lncRNA 0.35 4 87209131 87210577

Neighbor

gene id symbol gene type direction distance location
LOC110516832 wdr19 coding upstream 78869 87057752 ~ 87129649 (+)
LOC110511479 klhl5 coding upstream 155146 86997786 ~ 87054035 (+)
LOC110512499 LOC106594418 coding upstream 269487 86920572 ~ 86939031 (+)
LOC118936872 LOC106593007 coding upstream 291599 86882352 ~ 86916919 (+)
LOC118936871 NA coding upstream 387504 86820240 ~ 86821014 (+)
LOC118936497 lias coding downstream 180495 87391072 ~ 87402637 (+)
LOC118936875 LOC105009164 coding downstream 244487 87454878 ~ 87471566 (+)
LOC110519305 NA coding downstream 363090 87573667 ~ 87623897 (+)
LOC118936877 rhoh coding downstream 419354 87629931 ~ 87655775 (+)
nachra9 nachra9 coding downstream 464500 87675077 ~ 87696588 (+)
G932421 NA non-coding upstream 15164 87189622 ~ 87193354 (+)
G932397 LOC106591067 non-coding upstream 40847 87164185 ~ 87167671 (+)
G932401 NA non-coding upstream 53176 87141901 ~ 87155342 (+)
G932390 NA non-coding upstream 82830 87123870 ~ 87125688 (+)
G932389 NA non-coding upstream 83682 87121585 ~ 87124836 (+)
G932429 NA non-coding downstream 1440 87212017 ~ 87213680 (+)
G932430 NA non-coding downstream 5738 87216315 ~ 87216837 (+)
G932438 NA non-coding downstream 43916 87254493 ~ 87257867 (+)
G932446 NA non-coding downstream 49402 87259979 ~ 87260783 (+)
G932462 rfc1 non-coding downstream 157525 87368102 ~ 87368636 (+)
LOC110518842 tbc1d1 other upstream 456854 86704406 ~ 86830606 (+)
G932184 NA other upstream 732678 86441024 ~ 86475840 (+)
LOC110513338 LOC106595035 other upstream 1004334 86201044 ~ 86209191 (+)
G932466 NA other downstream 170091 87379860 ~ 87390230 (+)
G932484 NA other downstream 194210 87404787 ~ 87406846 (+)
G932526 pds5a other downstream 303368 87513945 ~ 87531331 (+)

Expression


Co-expression Network