G932462 (rfc1)


Basic Information

Item Value
gene id G932462
gene name rfc1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 87368102 ~ 87368636 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1062839
TCAGACTACACACTAGACCTGGGTCTCATCAACAACAACTAGTCAGACTAGTCAGACTACACACTAGACCTGGGTCTCATCAACAACAACTAGTCAGACTACACACTAGACCTGGGCCTCATCAACAACAACTAGTCAACTAGTCAGACTACACACTAGCCCTGGGTACTGAGAAGgctggagggagagtagagagagagttttCCTCACAGTTTTCCTCTTGGTACTGGCCACCAGTTTCCTGTCCGAGCGCTGCACACTCCCACTGCCAAAGTAGTCCAGGACAGAGGTGGGGGTGCGTTTGGTCTGCGGGGGCGCTGATTTAGGGGTGACGGGGGCTGGAGGAGACTTCTTCATCCCTCCTTTCCCTGTGGCGGGAACAAGGGTGGGTTTCGGGGGGGACCTGTGGATCTCTTTGGTCCTGGGGCGGGCCTTCCCTGGTTTGGGCACTCCATTACCCTGGGGCTTAGCCTGGGACTTCTTCAGAGACAGGAAGTTATCG

Function

symbol description
rfc1 Predicted to enable ATP binding activity; DNA binding activity; and DNA clamp loader activity. Predicted to act upstream of or within DNA repair and DNA replication. Predicted to be located in nucleus. Predicted to be part of DNA replication factor C complex. Human ortholog(s) of this gene implicated in West Nile fever. Orthologous to human RFC1 (replication factor C subunit 1).

NR:

description
replication factor C subunit 1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1062839 True 502 lncRNA 0.55 2 87368102 87368636

Neighbor

gene id symbol gene type direction distance location
LOC110516832 wdr19 coding upstream 238453 87057752 ~ 87129649 (+)
LOC110511479 klhl5 coding upstream 314730 86997786 ~ 87054035 (+)
LOC110512499 LOC106594418 coding upstream 429071 86920572 ~ 86939031 (+)
LOC118936872 LOC106593007 coding upstream 451183 86882352 ~ 86916919 (+)
LOC118936871 NA coding upstream 547088 86820240 ~ 86821014 (+)
LOC118936497 lias coding downstream 22436 87391072 ~ 87402637 (+)
LOC118936875 LOC105009164 coding downstream 86428 87454878 ~ 87471566 (+)
LOC110519305 NA coding downstream 205031 87573667 ~ 87623897 (+)
LOC118936877 rhoh coding downstream 261295 87629931 ~ 87655775 (+)
nachra9 nachra9 coding downstream 306441 87675077 ~ 87696588 (+)
G932422 NA non-coding upstream 79546 87195519 ~ 87288556 (+)
G932446 NA non-coding upstream 107319 87259979 ~ 87260783 (+)
G932438 NA non-coding upstream 110235 87254493 ~ 87257867 (+)
G932430 NA non-coding upstream 151265 87216315 ~ 87216837 (+)
G932429 NA non-coding upstream 154422 87212017 ~ 87213680 (+)
G932466 NA non-coding downstream 11224 87379860 ~ 87390230 (+)
G932483 NA non-coding downstream 32009 87400645 ~ 87400929 (+)
G932484 NA non-coding downstream 36151 87404787 ~ 87406846 (+)
G932467 NA non-coding downstream 70727 87439363 ~ 87440003 (+)
LOC110518842 tbc1d1 other upstream 616438 86704406 ~ 86830606 (+)
G932184 NA other upstream 892262 86441024 ~ 86475840 (+)
G932526 pds5a other downstream 145309 87513945 ~ 87531331 (+)

Expression


Co-expression Network