G932526 (pds5a)


Basic Information

Item Value
gene id G932526
gene name pds5a
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 87513945 ~ 87531331 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1062959
ctcgttAGCCTTCGGGTCATCAGGACACTGTGCGTCTTTGGTCTGCTTGATGTTCTCCACCATTTTCCTCAGGAAGGCGTGACTGTTGTTCTCATTCTGCACCATCAACACCTCTAGCATGAACCACaggcacTCCTTGAGGTCTCGGAGCTGTTCAAAGTCCTGTGGCTTGGTGAAGTCTGGGTCATGAGCCAACAGGTGGATCATATAAGGAACCACATACTCTGGTAGGAGAGACATCATCTTATCGTGGGCCAGGGGGTTGTTGTTGATGAATTCCCGTCTGATACTGATGTTCTTGAGCAGACACTGTCTGGCGTGGGCCCTCCTCTCCTTGACCGGGTCTTTGGCACACAGCGAGAAGACGGCCAGGTACTCTAACGGGAGGAGCAGCTTGACCAGAGCCAGGTGTAACTTCTGGGCAAAGATCTGACGCACCTGGTAACACTCATCGTTGATAACCAGCCCACAGAGCTGGAACTGTTCCGGTGTGATGATGTCATGGTAAACCGGTTCCTGGGCCAGCTTCATGATGGCTCCTCCTGCTGCCAGACGCAGACGAGACATGTCTGACTTACTGATCTTCTTCTGTTCTGTGAGGTCTCCCTCTGAGACCAGCATGGCGGACAGCAGTCGGAGGGTGGAGTTGGCCGATTTAGACTGGTTGTTCTTCATACCGAGGAGCCAACGCACCAACAGCTTAATGGCCTGCACCTTAGCCAGCACCTCAGGAGAGACTTCTTCGTCAGATGTCCACAGCTTCCCATTTTTGTTTCCTACAGACCTGTCATTCATGAGCAGGTCCTTGACGATGAAGTTGGCCACGATGGCCTTCATGGGGGAGGCAAACTGATCTGGAGCCAGTAGAGAGATatgacccagactgaccaggGGGGTTATCAACTGTTCTGGGACGTCAGCGTTCAGACTacgagagagaggctcaaaTATCTGCGCCAGCTGGACCTCCTTGTTACAGAAGATGGCGTGGATACAGTGGACAGCCTGTTTGGCCTGGTGGGGGGTCCCACGTTTAGCCTTCTGATGAAGGACTGGGATCAGGgtcgATCGTATCTGCTGTAGCTCGGTCTCTATTTTCTGTCCCGTGTTCCTGAAGATCTGAATGGCCGCCTCGGCCACCTTGTCATCCTCCATCTTCAGACACTGAAGCAGAGACTCATACGTCTCAGCAGAGTGGAACGCTGTGGGGTGGGTGAAGGACagaacctggaggagaggaggaagaggaggaggaggaaaggacgaggagaaggagaaggaggaagacaaggaagaggaggagagaagagaggagaggtggaagacaaggaagaggaggagaaagacaaGCAAAAGTTAT
>TU1062961
ctccctctcttacgATCGTATCTGCTGTAGCTCGGTCTCTATTTTCTGTCCCGTGTTCCTGAAGATCTGAATGGCCGCCTCGGCCACCTTGTCATCCTCCATCTTCAGACACTGAAGCAGAGACTCATACGTCTCAGCAGAGTGGAACGCTGTGGGGTGGGTGAAGGACagaaccTTCAGTAGTTCCAGTCCAGAGCGGATGGCGGTGTCTGGTGTGACAccttcctcatcatcatcagCCGTTCCCTCAATAGACTTATTCAGCAGCTTGACCAGAGCACTGATGGCCTCGGAGTCGATGTGGACGGGAGCGATGCGTTCCAACAGGAACTTCACCATCTCCAGGAAAGGGTTGGTGGGCTGCTTAGGGAACGTCAGTTTACGAGTAATCTCCCTCTGAAAAACACGATCAATATCTAACTGGTACTGTTCCCTCTGAAATACACGATCAATATCTAACTGGTAATCTCCCCTCTGAAATACACGATCAATATCTAACTGGTACTGTTCCCTCTGAAATACACAATCAATATCTAACTGGTAATCTCCCCTCTGAAATACACGATCAATATCTAACTGGTAATCTCCCCTctg

Function

symbol description
pds5a Predicted to be involved in DNA repair; mitotic sister chromatid cohesion; and negative regulation of DNA replication. Predicted to act upstream of or within cell division. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in chromatin and nucleus. Orthologous to human PDS5A (PDS5 cohesin associated factor A).

NR:

description
PREDICTED: sister chromatid cohesion protein PDS5 homolog A-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1062959 False 1360 TUCP 0.53 9 87513945 87528479
TU1062961 True 594 lncRNA 0.48 3 87528173 87531331

Neighbor

gene id symbol gene type direction distance location
LOC118936875 LOC105009164 coding upstream 56607 87454878 ~ 87471566 (+)
LOC118936497 lias coding upstream 125536 87391072 ~ 87402637 (+)
LOC110516832 wdr19 coding upstream 398524 87057752 ~ 87129649 (+)
LOC110511479 klhl5 coding upstream 474801 86997786 ~ 87054035 (+)
LOC110512499 LOC106594418 coding upstream 589142 86920572 ~ 86939031 (+)
LOC110519305 NA coding downstream 42336 87573667 ~ 87623897 (+)
LOC118936877 rhoh coding downstream 98600 87629931 ~ 87655775 (+)
nachra9 nachra9 coding downstream 143746 87675077 ~ 87696588 (+)
LOC118966670 NA coding downstream 174660 87705991 ~ 87756519 (+)
LOC118936878 LOC100196562 coding downstream 233522 87764853 ~ 87777685 (+)
G932530 NA non-coding upstream 4578 87522471 ~ 87523595 (+)
G932529 NA non-coding upstream 9555 87516974 ~ 87518618 (+)
G932525 NA non-coding upstream 16012 87511373 ~ 87512161 (+)
G932532 NA non-coding downstream 4228 87535559 ~ 87536020 (+)
G932546 NA non-coding downstream 32553 87563884 ~ 87564441 (+)
G932551 NA non-coding downstream 58968 87590299 ~ 87591017 (+)
G932541 NA non-coding downstream 92821 87624152 ~ 87625724 (+)
G932484 NA other upstream 121327 87404787 ~ 87406846 (+)
G932466 NA other upstream 137943 87379860 ~ 87390230 (+)
G932422 NA other upstream 239617 87195519 ~ 87288556 (+)
G932507 NA non-coding upstream 49297 87463134 ~ 87464648 (+)
G932506 NA non-coding upstream 50077 87462369 ~ 87463868 (+)
G932467 NA non-coding upstream 73942 87439363 ~ 87440003 (+)

Expression


Co-expression Network