gars1 (gars)


Basic Information

Item Value
gene id gars1
gene name gars
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 63442 ~ 88351 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934636.1
TTTACTTGTTTTCTGAGATTTCATCATTCTGTTCCATCCACATTGTCGCTCCGCCCGCGGTCCATGCTTCGTAGCGCAACATCAGCACTGCTGAGGACCAGCATTGAGATTCGCACTCTTCGCTCGGTGCCGAGGGTCTGCCGGTTTCTACAGTCGCTGCTGCGCAGTCCGACACAAAACAGGTCGTTTTCTCTTTCGGTTTGCTTGTGTAAGAAAAATAAAAGTCTTTGGCTGGAGCTTTCCGAAGGACACAAAATGAGTGGCAATATTGAAGAAATCCTCGCCCCACTGAGGCTGGCAGTGAAAGAACAGGGTGAGCTGGTGCGCCAGATGAAACAGGATGGTGCCCCTGATGTTGACGTCCTTAAAGCTGTTGCTGAACTGAAAGCTAGGAAGAGAACTCTGGAAACTAAGGAACTGTCTCTGCAGCCCAAAGATGACATTGTTGACAGAACCAAGATGGAGGATACGTTGAAGAGGAGATTCTTCTATGACCAGGCCTTCGCTATCTATGGAGGTGTGAGTGGTCTGTATGACTTTGGCCCCGTGGGCTGTGCCCTTAAGAACAACATCTTGCAGGCCTGGAGGCAGCACTTCATCCAGGAGGAGCAGATCCTGGAGATCGACTGCACCATGCTCACCCCGGAGCCCGTTCTCAAGACGTCTGGACACGTGGACAAGTTTGCGGACTACATGGTGAAAGACGTGAAGAACGGAGAGTGTTTCAGGGCAGACCACCTCCTCAAAGCTCACCTCCAGAAGCTGATGTCTGATAAGAAGTGTCCTGCAGAGAATAAGGCCGAGATGGAGGAAGTGGTCACTCAGATGGACAACTACACTCAACAGGAGTTGACTGACCTCTTTGTGAAATACAGTGTCAAGTCCCCCACCACAGGAAATGACGTTTCAGCCCCTCATCTCTTCAACCTGATGTTCCAGACGTCTATCGGGCCAGGGGGAAACATGACAGGCTACTTGAGGCCTGAAACGGCTCAGGGAATCTTCCTCAACTTCAAGCGTCTGTTGGAATTCAACCAGGGAAAGCTTCCATTCGCTGCTGCTCAGATCGGCAACTCCTTCAGGAACGAGATCTCACCTCGCTCAGGACTCATCCGTGTCAGAGAGTTCACCATGGCTGAGATTGAGCACTTTGTGGACCCGACTGAGAAGTTCCACCCCAAGTTCCCTAACGTGGCTGACCTGGAGATCATCCTGTACTCCTCCAAGGCCCAGACCAGTGGTCAGTCTGCTCACATCATGAGGCTGGGGGATGCTGTGGAGCAGGGGGTGATCAATAACTCCGTCCTGGGATATTTCATCGGGAGAATCTACCTCTACCTCACTAAAGTGGGTGTGGCCAAAGACAAGCTTCGCTTCCGTCAGCACATGGACAACGAGATGGCCCACTACGCCTGTGACTGCTGGGACGCAGAGACCAAAACATCCTATGGCTGGATCGAGATAGTAGGCTGTGCTGACCGCTCCTGTTTCGACCTGCTGTGCCACGCCCGGGCTACCAAGGTCCCTCTAGTGGCCGAGAAGCCTCTTAAAGAACCCAAAGTAGTCGATATTGTCCAGTTTGAGCCCAATAAGGGAGCCATCGGTAAAGCCTATAAGAAGGACGCCAAACTAGCGATGGAGTACCTAGCTGTCTGTGACGAGTGTTTCATCACTGAACAGGAGATGCTGCTCAACAGCAGCGGGGAGTTCACCATAGAGACGGAGGGAAAGACTTTTAAACTCACCAAGGACATGGTCAGTGTGAAGCGGTTTCAGAAGACCCTGCATGTGGAGGAGGTGGTCCCTAATGTCATCGAACCCTCCTTTGGCATCGGTAGAATCATGTACTCAATCTTCGAGCACACATTCCAAGTCAGAGAGGGAGACGAACAGAGAACGTTCTTCAGCTTCCCTACCACTGTAGCTCCATATAAATGCTCCGTCCTTCCTTTGAGCCAAAACCAGGAATTCATGCCTTTTGTTAAGGAACTCTcTGAAGCGATGACCAAACAGGGCGTGTCCCACAAGGTGGACGACTCGTCAGGATCCATTGGGCGGCGCTACGCCAGAACAGACGAGATCGGAGTGGCGTTCGGCATCACCATCGACTTTGACACGGTGAACAAGACGCCCCACACCGCCACTCTGAGGGACCGCGACTCCATGAGGCAGATCAGGGCCGAGGTTAGTGAGTTGCCAGGAATCATCCGTGATCTGGCAAACGGTGTCATGACTTGGGCTGAGGTGGAGAGCAAGTACCCCATCTTTGAGGGACAGGAGACCAGCAAGAAGGACACTGCCGAGGAATGAAGTTAATCTTACTCAGTATGTCTGTCCTATGAAACGCCCACAGACGTTTTTACATTTCTCCATCCATAGGGACGGTTTTACTGCAACTGTATTTCAGGAAGCAGTCAGTCCTCACGATGTCCTAACACACAACTGCAACCACTGAAATTAAActtcaaaataaatgttatataATCATTGTACTGAACAATTATAAACAGGGTGGCAGAGTAATGATTTGTCCCTGTTCTGGTAAATATTCACCTGCGTACTGGAATCTGCTCagttggagagaggaggggagagagagagtgcgtgagGGGGGGAAGAGATCTTCTCAGCCTGGTATAAAAAGAGAAATGTGTTCAGGTTGTCAGTCTTGtgtggaaagagaagagagacttCCAGTTTCAGGACTGATTAAATGGAAAACATCTCTGGTTCAATAAAGTGAGCCTGCTCTTACTGGAA

Function

symbol description
gars Predicted to enable several functions, including bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity; glycine-tRNA ligase activity; and identical protein binding activity. Predicted to be involved in diadenosine tetraphosphate biosynthetic process and tRNA aminoacylation for protein translation. Predicted to act upstream of or within glycyl-tRNA aminoacylation. Predicted to be located in several cellular components, including axon; extracellular exosome; and secretory granule. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2D and distal hereditary motor neuronopathy type 5A. Orthologous to human GARS1 (glycyl-tRNA synthetase 1).

NR:

description
PREDICTED: glycine--tRNA ligase

GO:

id name namespace
GO:0006426 glycyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004820 glycine-tRNA ligase activity molecular_function

KEGG:

id description
K01880 GARS, glyS1; glycyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934636.1 True 2760 mRNA 0.51 16 63442 88351

Neighbor

gene id symbol gene type direction distance location
dlec1 dlec1 coding downstream 105001 193352 ~ 307840 (+)
cry-dash LOC106579757 coding downstream 252290 340641 ~ 378363 (+)
slc22a13b NA coding downstream 303761 392112 ~ 438530 (+)
LOC110535152 LOC106590691 coding downstream 397341 485692 ~ 542353 (+)
LOC118937458 LOC106594516 coding downstream 473083 561434 ~ 564576 (+)
G933073 NA non-coding upstream 25504 36185 ~ 37938 (+)
G933075 NA non-coding upstream 32412 29993 ~ 31030 (+)
G933100 NA non-coding downstream 20505 108856 ~ 110183 (+)
G933110 NA non-coding downstream 40848 129199 ~ 129802 (+)
G933117 NA non-coding downstream 52990 141341 ~ 141755 (+)
G933145 NA non-coding downstream 91776 180127 ~ 181004 (+)
G933162 NA non-coding downstream 119769 208120 ~ 213206 (+)
G933532 LOC106594516 other downstream 473302 539980 ~ 562659 (+)
LOC110536523 LOC106563098 other downstream 507972 575640 ~ 604339 (+)
G933679 NA other downstream 636836 725187 ~ 728205 (+)
G933799 NA other downstream 861180 949531 ~ 951584 (+)

Expression


Co-expression Network