LOC110535150 (LOC106590688)


Basic Information

Item Value
gene id LOC110535150
gene name LOC106590688
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 742492 ~ 859531 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934648.1
TATCTCTGTGGCTTGAGCTTTGTCATGCTGGAAACGGGAAAGCTATTTCCAACAAGGTTGGTATTATGATTATAGTCAGCTAGACAAGTTGTGCAAGGTTACCTTAGCTAGCTAGGTTTTAGTCCTAGCCACCATCCATCTACACGGGCGTTTCAAATCATCTCTGCTGTACATGGTGATTTCATCAACCGAGAAAGGACAGGTAGGACCGATCAGCTAACCAGgcgTACCTGTTACGATAACCTGGGGAAACATCGCCACCTGGGGAAACACGCCACCTGGGGAAACACGCCACCTGGGGTAACATCGCCACCAGGGGTAACATCGCCACCTGGGGTAACATCGCCACCTGGGGTAACATCGCCACCTGGGGTAACATCGCCACCTGGGGTAACATCGCCACCTGGGGTAACATCGCCACCTGGGGTCATCAGAGGTCATCAGCGAAGCGTCGTAACTCTGAAGTTGACAGCTTTGATGCAGTACAGgtccAGAGGTCCAAGATGACAGAAGAGGTGATTGTCATCGCCAAATTTGACTACCTGGCTCAGCAAGACCAGGAGTTGGACATTAAGAAGAACGAGCGGCTGTGGCTGCTGGACGACAGTAAGTCCTGGTGGAGGGTCCGCAACGCCACCAACAAGACCGGCTTCGTACCCTCCAACTACGTAGAGAGGAAGAACAGCGCCAGGAAGGCATCCATCGTCAAGAACCTCAAAGACACACTAGGCATTGGGAAGGTGAAGCGGAAAACGGGGATGCGTGACACTGCCTCCAACGCAGACGCTGACATGTACTCCGACAACGGCGAGCGCCTGTACGACCTCAACCTGCCGGCGCTCGTCAAGTTCAGCTACACCGCCGAGCGGGAGGACGAGCTCTCGTTGGTCAAGGGCACCCACGTTATCGTCATGGAGAAGTGTAGCGACGGCTGGTGGCGTGGGGGGTACCAGGGGCGTTCCGGGTGGTTCCCCTCCAACTACGTGACAGAGGACGCAGACGGGACAGCGGGGGGAGGAGGTTTGGGAGACCCGGCAGGGTCGCTGACGGAGAAGCTAGCGGCAGTAGTTCACAGTGTGTCTAACGGGAACCGGGTACTCCACACGGTGCAGGCGCTGTACCCTTTCAGCTCGGGGAACGACGAGGAGCTCAACTTTGAGAAGGGAGAGGTGATGGAGGTGGTAGAGAAACCAGACAACGACCCTGAGTGGTGGAAGTGCCGTAAAGCAGATGGACAGCTGGGACTAGTGCCTAAGAACTACGTCACTGTGCTGCCTCCCCAGCAGGACTCTACTACCCAGAATGCCTCACTGGGCCCCGCGGGGCCGCCCACGCCCGACTGTGACTACATCTCTCCGGCCACGGTGGGGCGGTTTGCTGGGAAGCCGTGGTACTATGGCAAGGTGACGCGTCATCAGGCAGAGGTGGCTCTCAaccagagaggagtggagggagactTCCTCATCAGAGACTCTGAGTCATCGCCCAGtgatttctccatctctctgaaGGCCCAggggaagaacaagcatttcaaGGTTCAGTTGAAGGATGGTTTGTACTGCATTGGCCAGAGGAAGTTCAGTTCTCTGGAGGACTTGGTGGATCACTACAAGAAGGCTCCCATCTTCACCAGCGAGCAGGGAGACAAGCTCTACCTGGTTAAGGCCCTGGCTGCCTCTTGATCACACactcttaaacacacacacacacacacactgacaaacttttacaCATCACAAGGACTTCCTATGAGCCGGGAGCCGTGATCATTCCATtaggaaagggggaggaagagagaagtggagagggagaaaaggacaTTGGACTCTCCTTTATGTAAATCATCCTATCTTACCCAGATCATGCGTTTACTTCTTCTAGGTCATAATGCCATCTTCTAGATATAGGCTGTTTctgtttataatatatatatatatatattattttaagtttctttaaaaaaaaaaaaaggtgatgTTTTGAACTCAAACAACAAGGAGTCGTAGTGATGAGGCGGTTTGGTCGTTGGTCGACGATCCAGAATGTAGCCTAGCTACACATTTCAACAGACTTGTTGTGTCGTTGTCGGTCTTAACTCTTTCAACGTCGTACAACAACTGATATGTGGTGGACAATAATCAGACTTCTCCTAACTGCTCAACCTAAATAAAAATGATTAAGTGA
>XM_036934649.1
TATCTCTGTGGCTTGAGCTTTGTCATGCTGGAAACGGGAAAGCTATTTCCAACAAGGTTGGTATTATGATTATAGTCAGCTAGACAAGTTGTGCAAGGTTACCTTAGCTAGCTAGGTTTTAGTCCTAGCCACCATCCATCTACACGGGCGTTTCAAATCATCTCTGCTGTACATGGTGATTTCATCAACCGAGAAAGGACAGGTAGGACCGATCAGCTAACCAGgcgTACCTGTTACGATAACCTGGGGAAACATCGCCACCTGGGGAAACACGCCACCTGGGGAAACACGCCACCTGGGGTAACATCGCCACCAGGGGTAACATCGCCACCTGGGGTAACATCGCCACCTGGGGTAACATCGCCACCTGGGGTAACATCGCCACCTGGGGTAACATCGCCACCTGGGGTAACATCGCCACCTGGGGTAACACGCCACCTGGGGTCATCAGAGGTCATCAGCGAAGCGTCGTAACTCTGAAGTTGACAGCTTTGATGCAGTACAGgtccAGAGGTCCAAGATGACAGAAGAGGTGATTGTCATCGCCAAATTTGACTACCTGGCTCAGCAAGACCAGGAGTTGGACATTAAGAAGAACGAGCGGCTGTGGCTGCTGGACGACAGTAAGTCCTGGTGGAGGGTCCGCAACGCCACCAACAAGACCGGCTTCGTACCCTCCAACTACGTAGAGAGGAAGAACAGCGCCAGGAAGGCATCCATCGTCAAGAACCTCAAAGACACACTAGGCATTGGGAAGGTGAAGCGGAAAACGGGGATGCGTGACACTGCCTCCAACGCAGACGCTGACATGTACTCCGACAACGGCGAGCGCCTGTACGACCTCAACCTGCCGGCGCTCGTCAAGTTCAGCTACACCGCCGAGCGGGAGGACGAGCTCTCGTTGGTCAAGGGCACCCACGTTATCGTCATGGAGAAGTGTAGCGACGGCTGGTGGCGTGGGGGGTACCAGGGGCGTTCCGGGTGGTTCCCCTCCAACTACGTGACAGAGGACGCAGACGGGACAGCGGGGGGAGGAGGTTTGGGAGACCCGGCAGGGTCGCTGACGGAGAAGCTAGCGGCAGTAGTTCACAGTGTGTCTAACGGGAACCGGGTACTCCACACGGTGCAGGCGCTGTACCCTTTCAGCTCGGGGAACGACGAGGAGCTCAACTTTGAGAAGGGAGAGGTGATGGAGGTGGTAGAGAAACCAGACAACGACCCTGAGTGGTGGAAGTGCCGTAAAGCAGATGGACAGCTGGGACTAGTGCCTAAGAACTACGTCACTGTGCTGCCTCCCCAGCAGGACTCTACTACCCAGAATGCCTCACTGGGCCCCGCGGGGCCGCCCACGCCCGACTGTGACTACATCTCTCCGGCCACGGTGGGGCGGTTTGCTGGGAAGCCGTGGTACTATGGCAAGGTGACGCGTCATCAGGCAGAGGTGGCTCTCAaccagagaggagtggagggagactTCCTCATCAGAGACTCTGAGTCATCGCCCAGtgatttctccatctctctgaaGGCCCAggggaagaacaagcatttcaaGGTTCAGTTGAAGGATGGTTTGTACTGCATTGGCCAGAGGAAGTTCAGTTCTCTGGAGGACTTGGTGGATCACTACAAGAAGGCTCCCATCTTCACCAGCGAGCAGGGAGACAAGCTCTACCTGGTTAAGGCCCTGGCTGCCTCTTGATCACACactcttaaacacacacacacacacacactgacaaacttttacaCATCACAAGGACTTCCTATGAGCCGGGAGCCGTGATCATTCCATtaggaaagggggaggaagagagaagtggagagggagaaaaggacaTTGGACTCTCCTTTATGTAAATCATCCTATCTTACCCAGATCATGCGTTTACTTCTTCTAGGTCATAATGCCATCTTCTAGATATAGGCTGTTTctgtttataatatatatatatatatattattttaagtttctttaaaaaaaaaaaaaggtgatgTTTTGAACTCAAACAACAAGGAGTCGTAGTGATGAGGCGGTTTGGTCGTTGGTCGACGATCCAGAATGTAGCCTAGCTACACATTTCAACAGACTTGTTGTGTCGTTGTCGGTCTTAACTCTTTCAACGTCGTACAACAACTGATATGTGGTGGACAATAATCAGACTTCTCCTAACTGCTCAACCTAAATAAAAATGATTAAGTGA
>XM_036934650.1
TATCTCTGTGGCTTGAGCTTTGTCATGCTGGAAACGGGAAAGCTATTTCCAACAAGGTTGGTATTATGATTATAGTCAGCTAGACAAGTTGTGCAAGGTTACCTTAGCTAGCTAGGTTTTAGTCCTAGCCACCATCCATCTACACGGGCGTTTCAAATCATCTCTGCTGTACATGGTGATTTCATCAACCGAGAAAGGACAGGTAGGACCGATCAGCTAACCAGgcgTACCTGTTACGATAACCTGGGGAAACATCGCCACCTGGGGAAACACGCCACCTGGGGAAACACGCCACCTGGGGTAACATCGCCACCAGGGGTAACATCGCCACCTGGGGTAACATCGCCACCTGGGGTAACATCGCCACCTGGGGTAACATCGCCACCTGGGGTAACATCGCCACCTGGGGTAACATCGCCACCTGGGGTAACACGCCACCTGGGGTAACACGCCACCTGGGGTCATCAGAGGTCATCAGCGAAGCGTCGTAACTCTGAAGTTGACAGCTTTGATGCAGTACAGgtccAGAGGTCCAAGATGACAGAAGAGGTGATTGTCATCGCCAAATTTGACTACCTGGCTCAGCAAGACCAGGAGTTGGACATTAAGAAGAACGAGCGGCTGTGGCTGCTGGACGACAGTAAGTCCTGGTGGAGGGTCCGCAACGCCACCAACAAGACCGGCTTCGTACCCTCCAACTACGTAGAGAGGAAGAACAGCGCCAGGAAGGCATCCATCGTCAAGAACCTCAAAGACACACTAGGCATTGGGAAGGTGAAGCGGAAAACGGGGATGCGTGACACTGCCTCCAACGCAGACGCTGACATGTACTCCGACAACGGCGAGCGCCTGTACGACCTCAACCTGCCGGCGCTCGTCAAGTTCAGCTACACCGCCGAGCGGGAGGACGAGCTCTCGTTGGTCAAGGGCACCCACGTTATCGTCATGGAGAAGTGTAGCGACGGCTGGTGGCGTGGGGGGTACCAGGGGCGTTCCGGGTGGTTCCCCTCCAACTACGTGACAGAGGACGCAGACGGGACAGCGGGGGGAGGAGGTTTGGGAGACCCGGCAGGGTCGCTGACGGAGAAGCTAGCGGCAGTAGTTCACAGTGTGTCTAACGGGAACCGGGTACTCCACACGGTGCAGGCGCTGTACCCTTTCAGCTCGGGGAACGACGAGGAGCTCAACTTTGAGAAGGGAGAGGTGATGGAGGTGGTAGAGAAACCAGACAACGACCCTGAGTGGTGGAAGTGCCGTAAAGCAGATGGACAGCTGGGACTAGTGCCTAAGAACTACGTCACTGTGCTGCCTCCCCAGCAGGACTCTACTACCCAGAATGCCTCACTGGGCCCCGCGGGGCCGCCCACGCCCGACTGTGACTACATCTCTCCGGCCACGGTGGGGCGGTTTGCTGGGAAGCCGTGGTACTATGGCAAGGTGACGCGTCATCAGGCAGAGGTGGCTCTCAaccagagaggagtggagggagactTCCTCATCAGAGACTCTGAGTCATCGCCCAGtgatttctccatctctctgaaGGCCCAggggaagaacaagcatttcaaGGTTCAGTTGAAGGATGGTTTGTACTGCATTGGCCAGAGGAAGTTCAGTTCTCTGGAGGACTTGGTGGATCACTACAAGAAGGCTCCCATCTTCACCAGCGAGCAGGGAGACAAGCTCTACCTGGTTAAGGCCCTGGCTGCCTCTTGATCACACactcttaaacacacacacacacacacactgacaaacttttacaCATCACAAGGACTTCCTATGAGCCGGGAGCCGTGATCATTCCATtaggaaagggggaggaagagagaagtggagagggagaaaaggacaTTGGACTCTCCTTTATGTAAATCATCCTATCTTACCCAGATCATGCGTTTACTTCTTCTAGGTCATAATGCCATCTTCTAGATATAGGCTGTTTctgtttataatatatatatatatatattattttaagtttctttaaaaaaaaaaaaaggtgatgTTTTGAACTCAAACAACAAGGAGTCGTAGTGATGAGGCGGTTTGGTCGTTGGTCGACGATCCAGAATGTAGCCTAGCTACACATTTCAACAGACTTGTTGTGTCGTTGTCGGTCTTAACTCTTTCAACGTCGTACAACAACTGATATGTGGTGGACAATAATCAGACTTCTCCTAACTGCTCAACCTAAATAAAAATGATTAAGTGA
>XM_036934651.1
GGTCACATGTCCAGGGAGTGGGCTGCCTGCCCTGCTCTCTCTGGGTGTTCACATGGAATAACTCTGCAGCTGTAGTgggaagagtagagagagagaaagagagggagcgccCAACATGGACATGGCTAACCTCTTCAAGCACTTCTTTCGCATTGGGAAGGTGAAGCGGAAAACGGGGATGCGTGACACTGCCTCCAACGCAGACGCTGACATGTACTCCGACAACGGCGAGCGCCTGTACGACCTCAACCTGCCGGCGCTCGTCAAGTTCAGCTACACCGCCGAGCGGGAGGACGAGCTCTCGTTGGTCAAGGGCACCCACGTTATCGTCATGGAGAAGTGTAGCGACGGCTGGTGGCGTGGGGGGTACCAGGGGCGTTCCGGGTGGTTCCCCTCCAACTACGTGACAGAGGACGCAGACGGGACAGCGGGGGGAGGAGGTTTGGGAGACCCGGCAGGGTCGCTGACGGAGAAGCTAGCGGCAGTAGTTCACAGTGTGTCTAACGGGAACCGGGTACTCCACACGGTGCAGGCGCTGTACCCTTTCAGCTCGGGGAACGACGAGGAGCTCAACTTTGAGAAGGGAGAGGTGATGGAGGTGGTAGAGAAACCAGACAACGACCCTGAGTGGTGGAAGTGCCGTAAAGCAGATGGACAGCTGGGACTAGTGCCTAAGAACTACGTCACTGTGCTGCCTCCCCAGCAGGACTCTACTACCCAGAATGCCTCACTGGGCCCCGCGGGGCCGCCCACGCCCGACTGTGACTACATCTCTCCGGCCACGGTGGGGCGGTTTGCTGGGAAGCCGTGGTACTATGGCAAGGTGACGCGTCATCAGGCAGAGGTGGCTCTCAaccagagaggagtggagggagactTCCTCATCAGAGACTCTGAGTCATCGCCCAGtgatttctccatctctctgaaGGCCCAggggaagaacaagcatttcaaGGTTCAGTTGAAGGATGGTTTGTACTGCATTGGCCAGAGGAAGTTCAGTTCTCTGGAGGACTTGGTGGATCACTACAAGAAGGCTCCCATCTTCACCAGCGAGCAGGGAGACAAGCTCTACCTGGTTAAGGCCCTGGCTGCCTCTTGATCACACactcttaaacacacacacacacacacactgacaaacttttacaCATCACAAGGACTTCCTATGAGCCGGGAGCCGTGATCATTCCATtaggaaagggggaggaagagagaagtggagagggagaaaaggacaTTGGACTCTCCTTTATGTAAATCATCCTATCTTACCCAGATCATGCGTTTACTTCTTCTAGGTCATAATGCCATCTTCTAGATATAGGCTGTTTctgtttataatatatatatatatatattattttaagtttctttaaaaaaaaaaaaaggtgatgTTTTGAACTCAAACAACAAGGAGTCGTAGTGATGAGGCGGTTTGGTCGTTGGTCGACGATCCAGAATGTAGCCTAGCTACACATTTCAACAGACTTGTTGTGTCGTTGTCGGTCTTAACTCTTTCAACGTCGTACAACAACTGATATGTGGTGGACAATAATCAGACTTCTCCTAACTGCTCAACCTAAATAAAAATGATTAAGTGA

Function

NR:

description
cytoplasmic protein NCK1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934648.1 False 2187 mRNA 0.52 6 742492 859531
XM_036934649.1 False 2204 mRNA 0.52 6 742492 859531
XM_036934650.1 False 2221 mRNA 0.52 6 742492 859531
XM_036934651.1 True 1607 mRNA 0.52 3 829488 859531

Neighbor

gene id symbol gene type direction distance location
LOC110535151 LOC106579763 coding upstream 95531 632123 ~ 646961 (+)
LOC110536523 LOC106563098 coding upstream 138153 575640 ~ 604339 (+)
LOC118937458 LOC106594516 coding upstream 177916 561434 ~ 564576 (+)
LOC110535152 LOC106590691 coding upstream 200139 485692 ~ 542353 (+)
slc22a13b NA coding upstream 303962 392112 ~ 438530 (+)
fam162a e2ig5 coding downstream 493458 1352989 ~ 1364272 (+)
nktr nktr coding downstream 529842 1389373 ~ 1479628 (+)
LOC110535167 LOC106579754 coding downstream 983633 1839051 ~ 1855581 (+)
si:ch73-206p6.1 LOC106579752 coding downstream 1517170 2376701 ~ 2387592 (+)
plod2 LOC106579751 coding downstream 1559808 2419339 ~ 2530974 (+)
G933686 NA non-coding upstream 3172 738714 ~ 739320 (+)
G933684 NA non-coding upstream 3972 738217 ~ 738520 (+)
G933677 NA non-coding upstream 90236 651588 ~ 652256 (+)
G933676 NA non-coding upstream 94419 647852 ~ 648073 (+)
G933650 NA non-coding upstream 117094 625165 ~ 625398 (+)
G933692 NA non-coding downstream 6351 865882 ~ 873581 (+)
G933762 NA non-coding downstream 14190 873721 ~ 875058 (+)
G933765 LOC106579760 non-coding downstream 23102 882633 ~ 889992 (+)
G933768 NA non-coding downstream 35273 894804 ~ 915446 (+)
G933781 NA non-coding downstream 57871 917402 ~ 918236 (+)
G933679 NA other upstream 14287 725187 ~ 728205 (+)
G933532 LOC106594516 other upstream 179833 539980 ~ 562659 (+)
G933799 NA other downstream 90000 949531 ~ 951584 (+)
G934169 NA other downstream 447996 1307527 ~ 1307759 (+)
G934256 NA other downstream 628545 1488076 ~ 1496014 (+)
G934579 NA other downstream 967096 1826627 ~ 1827366 (+)
G934640 NA other downstream 1049129 1908660 ~ 1909080 (+)

Expression


Co-expression Network