LOC110535167 (LOC106579754)


Basic Information

Item Value
gene id LOC110535167
gene name LOC106579754
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 1839051 ~ 1855581 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620030.2
TTCACCAGTGGACGGCCCTCTCTCAGAGAGTATCATTGCCAAGTATAACTCATATTTTAGCAAGTCTTATTTTGGGCTTAAATCTCTACCACTCTTGCCTTGTTCTGCGCTGTTCATCAGGCGCCACCTCCCGTTCCCCTGATCCGCTCTCGTTCAGGTTCTCAATCCGACATGGCTCTGTAGCGAAATTAGCCCGTATCATAACAACAGGTCGGTTCCATTACTTTTCCCCGGGACAATGGACGGCGTCGCCCCTATTCACTAATACACAGAAACCGATCCCGCGACGAAGAGGAGGAAGCGCAGCGAGCAAGGAGGGTTGTTGCGGTGCGGAGGACGTATAAAAAATGTTTCTTTATCTTATCGTATCTTTTTGGGCCTTTGAGTGATGCGTAAAAACTACCCAACTCGGATAATTGCTTTAGAGAAAGGGGCTAGTCTATGTTTGAAAATATTTTCGCTACTACCACATTTTCTAACTGTACCTAAAGGCTACATTTTATGAATTTCAATGACATTGTATTTTCGTAAGTTGTGCAagttgtatttattattatctgcAGCCTACAACATTTTTAGTGGGGCTACTTTGCCTTTAGGCCTACTTTCCCTGACTATTGTAGGTGTTGTTTGCTTATAGCAAAACTTGGGTACATTGCGATTCCATAACTCTTAGTCAGTCAGTAGAAGATATGACAGCTATACCTAACGGTTTAACTTTTGAAGTTTAAAGTACAATAACCTTTGCAATACAAATACATCTTTCTCTTCCAAGTGTTGCCTGAGGCTCGGCGCAGGCGCTCTGGCTGCTTGCTGTCACTAAAACAATTTTCTTCACATTGGAAACTGTCACAAGTGACGTCAATCACGGGGCTCTGACCAATTAGAAGGCGGGGTGATTGTTTAGCTCCACGGGCTGCAGCGCCTACCATGAATCTCTATTCACTATCAAAGCGTCCTGCTGCTGCCGGCCAACCGAATGCGATTCCATGCAGCCACTTTAGAACTTAGAACAGTTTTTTTCCTtctatattttagttttttttctatattttagttttttttctatatttttgtttttttctgtatttttcattgcgattaaaatatatttgtcatcatcattattattttgCATGCTGTCAAGTTATTCTAGAATTAGGAGTAATGAGCATGGATGTTTTGGGAAACCATGTGATGTACCCTACGATTTCCAAACGGAACACGGCGCTGAGATTAGTTGACTTGGCAGGGGCgtaccaccatcaccatcatcaccaccatacCCCTCAGAGCGTGACAGGCTTCCCGGGGTTCAGCAGCCATCCACACTCAATGGCTCACTCGCACCCTGGGGAGATTACTGCGGAACCCCGCCTGGGGCCGAGTCCATTCGGGCCAGAACACATGGGGCACTCCGCGGCCCTCAAAATCAGCCCagcccatcattacccacaccaccatcaccaccacaatCATCATATGGCAGGCCACAGTGAAGTGGTCTCCAGTCAAACGGGAGCTTTTGGCCCGGTGCATGCGGCTCCAGTCCCCTATTCCATGTCCCACACGGCCCAGGCGTTATCCGCAGCCACAGGTAGGGATTTCCTCATTCGGAGAGATCTGACAGCTCAAGCCATGCCGGTACTGACCGACCAGAGCCCCGGATCAACCTCTCATCACGGAATGTTTGTCTCAACAACAGGTAGCTATCCGGGACACTACGGCCATCACCCTGATGCTGGTAGCCATGCCCTCTTCTCCGGACTCCACCATGAGCAGTCTTCTAGCGGAGCACCAGGTGGCCAGGCCATGAATGGACAAATAAGGTTAGGAATACCTAGCGAAATGTACGTTAGGTCTGATCACTTGAGTCAAGTGGCGAGCTCCAGGGCTGATCCGTTCTCTGCCTCGACATTACATGGCTACGGCGGTCTGAACCATCTGAACATGAACCTCAGCGCCCACCACCACGGAGCCGGTGCATTCTTCCGCTACATGAGGCAGCCGATAAAGCAAGAACTAATCTGCAAGTGGCACGAACCGGAACACTCGGCGAAAAAACTCTGCTCCAAAACTTACGGCACGATGCACGAGCTGGTAACGCATGTGACGGTTGATCACGTCGGTGGCCCGGAGATGGCTAACCATATCTGCTTCTGGGAAGAGTGTCCGAGAGAAGGAAAACCATTTAAAGCCAAGTACAAACTTGTAAATCATATCAGAGtacacaccggagagaaaccaTTTCCATGTCCCTTCCCAGGCTGTGGAAAAGTATTTGCCCGATCGGAGAACCTGAAGATCCACAAGAGGACTCACACAGGTGAGAAACCCTTCAAATGTGAGTTTGACGGCTGCGACCGACGTTTCGCCAACAGCAGTGACCGGAAGAAGCACTCCCACGTGCACACCAGCGATAAGCCGTACAACTGCAAAGTGAGAGGCTGTGACAAATCCTACACACACCCCAGCTCTCtcagaaaacacatgaaagtgCACTGCAAGTCTCCACCACCAAGTTCTGGCTACGAGTCTTCAACTCCGTCATTAGTGTCCCCATCATCGGACTTAGGCCGAGAGCCAGGGGCCTCGTCGCTCTCAGAACCAGCACCTTCGTCCCAACCCGCCAATTTAAGTGAGTGGTACGTCTGTCATAGTTCTGGTGCGAGCGGAACTCAGACACCTCCCAGCGGCTCCTCCAGCCCTGATCCCGGGGATGAGACGCACTACAGACACCCGGAGCCAAGGGACGCTTTCTAACCAAAACTGGCCCAGAAAATCATTCTAAAACTTCTTGAATATATTTTCCAATATACCCGCGGACTTACAAAATTAACACATCGAAAAAGGTCTGTTTTCTAAGGCCCAAATCATTCAATGTACTGTCTGGCATATCGGACAAATTAGACACTGCCAAATGTATCTTGTGATAGCTCTCTTCTATCCCAATGTGTTTGGAAAAACATGTATTATTCTCGTACTCGGATATTGTACGCATGTTTTTTTTTGCTGTATTACTTTGTAAATCGAGTTTTGACTTCAATatctttttaatttattttttgaaTCTGACATGAGCATTTTTGTATTATCGAACCAAAGTGTTtcaatatattaaaaaaatgtatatttgtaaatTGATACGTTTCGATGTGTAGGTGGTAACAGTCATTTTGTAAGCTTTGGTATTTCagcaattttttttattgtttgcTACACTTATTTGTATAAATTAAATAATTGAAACGTTTGGAGTTTCACGCAAGAAAATTTGTCTCCATTTGTGATGGTCTACTCTATTGATTGACTCGTTTTCATATAGCCTATTTGATATTATTACATTCAATTCATAAATGTTTTGTCAATGTGGGCATTTTGTGATTTTGTAATTCTTGTCAATATTTGTTAGTAATGCATTTTTATTCAAATGTGATCCTATCGAGAAAATACACTCGAAATGTGTACCAAACTGCCTTGTAATTTGTCAGTATTTTGAATAAATCGTGTATGATAAAAAAATGT
>TU1065610
AGAGAGACAAACGTGAAGACAACAGAGTCTAGCGTTCTCAATCTTTTTCCGTGCAACTTTTAGTAAGTTTTTAAGTAGactaccacaacacacacacaaatctggaAGACCCTTCAACAGGTGGAAAACGGTCAGGATGGCACGTGTGTCGAAGTGACTTTGAGAAAGGAAGAAATACATTCTTCTAGGACTTCCAAACACATAAAAGGTGTCGGGGAACCCTCAAATAAACCAACAGAAAGCAAACATGGTTCATAGTTGAATCATACATGTTTATTTTGACTAATTTATCTGCCATAGGAAGTATCCGGTGATTGACGCATGCGTTGTTGACTGATTCTTTATTTGGATACCGCAATGGAGAACCTCTACATCAGGGTGACCAATGATATGGATTCCATCAGTGGAGGCCTCTAAactaCAACAACCCTACACTAGGCACCCgggtgggagagggggggggggggggggggggggggggggggtgattccTACCCGAGTTAAGTGCACGTAAATTTAAGGTGAGAAACCCTTCAAATGTGAGTTTGACGGCTGCGACCGACGTTTCGCCAACAGCAGTGACCGGAAGAAGCACTCCCACGTGCACACCAGCGATAAGCCGTACAACTGCAAAGTGAGAGGCTGTGACAAATCCTACACACACCCCAGCTCTCtcagaaaacacatgaaagtgCACTGCAAGTCTCCACCACCAAGTTCTGGCTACGAGTCTTCAACTCCGTCATTAGTGTCCCCATCATCGGACTTAGGCCGAGAGCCAGGGGCCTCGTCGCTCTCAGAACCAGCACCTTCGTCCCAACCCGCCAATTTAAGTGAGTGGTACGTCTGTCATAGTTCTGGTGCGAGCGGAACTCAGACACCTCCCAGCGGCTCCTCCAGCCCTGATCCCGGGGATGAGACGCACTACAGACACCCGGAGCCAAGGGACGCTTTCTAACCAAAACTGGCCCAGAAAATCATTCTAAAACTTCTTGAATATATTTTCCAATATACCCGCGGACTTACAAAATTAACACATCGAAAAAGGTCTGTTTTCTAAGGCCCAAATCATTCAATGTACTGTCTGGCATATCGGACAAATTAGACACTGCCAAATGTATCTTGTGATAGCTCTCTTCTATCCCAATGTGTTTGGAAAAACATGTATTATTCTCGTACTCGGATATTGTACGCATGTTTTTTTTTGCTGTATTACTTTGTAAATCGAGTTTTGACTTCAATatctttttaatttattttttgaaTCTGACATGAGCATTTTTGTATTATCGAACCAAAGTGTTtcaatatattaaaaaaatgtatatttgtaaatTGATACGTTTCGATGTGTAGGTGGTAACAGTCATTTTGTAAGCTTTGGTATTTCagcaattttttttattgtttgcTACACTTATTTGTATAAATTAAATAATTGAAACGTTTGGAGTTTCACGCAAGAAAATTTGTCTCCATTTGTGATGGTCTACTCTATTGATTGACTCGTTTTCATATAGCCTATTTGATATTATTACATTCAATTCATAAATGTTTTGTCAATGTGGGCATTTTGTGATTTTGTAATTCTTGTCAATATTTGTTAGTAATGCATTTTTATTCAAATGTGATCCTATCGAGAAAATACACTCGAAATGTGTACCAAACTGCCTTGTAATTTGTCAGTATTTTGAATAAATCGTGTATGATAAAAAAATGTCATTTTCCTTTT
>TU1065611
AGAGAGACAAACGTGAAGACAACAGAGTCTAGCGTTCTCAATCTTTTTCCGTGCAACTTTTAGTAAGTTTTTAAGTAGactaccacaacacacacacaaatctggaAGACCCTTCAACAGGTGGAAAACGGTCAGGATGGCACGTGTGTCGAAGTGACTTTGAGAAAGGAAGAAATACATTCTTCTAGGACTTCCAAACACATAAAAGGTGTCGGGGAACCCTCAAATAAACCAACAGAAAGCAAACATGGTTCATAGTTGAATCATACATGTTTATTTTGACTAATTTATCTGCCATAGGAAGTATCCGGTGATTGACGCATGCGTTGTTGACTGATTCTTTATTTGGATACCGCAATGGAGAACCTCTACATCAGGGTGACCAATGATATGGATTCCATCAGTGGAGGCCTCTAAGTGAGAAACCCTTCAAATGTGAGTTTGACGGCTGCGACCGACGTTTCGCCAACAGCAGTGACCGGAAGAAGCACTCCCACGTGCACACCAGCGATAAGCCGTACAACTGCAAAGTGAGAGGCTGTGACAAATCCTACACACACCCCAGCTCTCtcagaaaacacatgaaagtgCACTGCAAGTCTCCACCACCAAGTTCTGGCTACGAGTCTTCAACTCCGTCATTAGTGTCCCCATCATCGGACTTAGGCCGAGAGCCAGGGGCCTCGTCGCTCTCAGAACCAGCACCTTCGTCCCAACCCGCCAATTTAAGTGAGTGGTACGTCTGTCATAGTTCTGGTGCGAGCGGAACTCAGACACCTCCCAGCGGCTCCTCCAGCCCTGATCCCGGGGATGAGACGCACTACAGACACCCGGAGCCAAGGGACGCTTTCTAACCAAAACTGGCCCAGAAAATCATTCTAAAACTTCTTGAATATATTTTCCAATATACCCGCGGACTTACAAAATTAACACATCGAAAAAGGTCTGTTTTCTAAGGCCCAAATCATTCAATGTACTGTCTGGCATATCGGACAAATTAGACACTGCCAAATGTATCTTGTGATAGCTCTCTTCTATCCCAATGTGTTTGGAAAAACATGTATTATTCTCGTACTCGGATATTGTACGCATGTTTTTTTTTGCTGTATTACTTTGTAAATCGAGTTTTGACTTCAATatctttttaatttattttttgaaTCTGACATGAGCATTTTTGTATTATCGAACCAAAGTGTTtcaatatattaaaaaaatgtatatttgtaaatTGATACGTTTCGATGTGTAGGTGGTAACAGTCATTTTGTAAGCTTTGGTATTTCagcaattttttttattgtttgcTACACTTATTTGTATAAATTAAATAATTGAAACGTTTGGAGTTTCACGCAAGAAAATTTGTCTCCATTTGTGATGGTCTACTCTATTGATTGACTCGTTTTCATATAGCCTATTTGATATTATTACATTCAATTCATAAATGTTTTGTCAATGTGGGCATTTTGTGATTTTGTAATTCTTGTCAATATTTGTTAGTAATGCATTTTTATTCAAATGTGATCCTATCGAGAAAATACACTCGAAATGTGTACCAAACTGCCTTGTAATTTGTCAGTATTTTGAATAAATCGTGTATGATAAAAAAATGTCATTTTCCTTTT
>TU1065613
AGAGAGACAAACGTGAAGACAACAGAGTCTAGCGTTCTCAATCTTTTTCCGTGCAACTTTTAGTAAGTTTTTAAGTAGactaccacaacacacacacaaatctggaAGACCCTTCAACAGGTGGAAAACGGTCAGGATGGCACGTGTGTCGAAGTGACTTTGAGAAAGGAAGAAATACATTCTTCTAGGACTTCCAAACACATAAAAGGTGTCGGGGAACCCTCAAATAAACCAACAGAAAGCAAACATGGTTCATAGTTGAATCATACATGTTTATTTTGACTAATTTATCTGCCATAGGAAGTATCCGGTGATTGACGCATGCGTTGTTGACTGATTCTTTATTTGGATACCGCAATGGAGAACCTCTACATCAGGGTGACCAATGATATGGATTCCATCAGTGGAGGCCTCTAAactaCAACAACCCTACACTAGGCACCCgggtgggagagggggggggggggattccTACCCGAGTTAAGTGCACGTAAATTTAAGGTGAGAAACCCTTCAAATGTGAGTTTGACGGCTGCGACCGACGTTTCGCCAACAGCAGTGACCGGAAGAAGCACTCCCACGTGCACACCAGCGATAAGCCGTACAACTGCAAAGTGAGAGGCTGTGACAAATCCTACACACACCCCAGCTCTCtcagaaaacacatgaaagtgCACTGCAAGTCTCCACCACCAAGTTCTGGCTACGAGTCTTCAACTCCGTCATTAGTGTCCCCATCATCGGACTTAGGCCGAGAGCCAGGGGCCTCGTCGCTCTCAGAACCAGCACCTTCGTCCCAACCCGCCAATTTAAGTGAGTGGTACGTCTGTCATAGTTCTGGTGCGAGCGGAACTCAGACACCTCCCAGCGGCTCCTCCAGCCCTGATCCCGGGGATGAGACGCACTACAGACACCCGGAGCCAAGGGACGCTTTCTAACCAAAACTGGCCCAGAAAATCATTCTAAAACTTCTTGAATATATTTTCCAATATACCCGCGGACTTACAAAATTAACACATCGAAAAAGGTCTGTTTTCTAAGGCCCAAATCATTCAATGTACTGTCTGGCATATCGGACAAATTAGACACTGCCAAATGTATCTTGTGATAGCTCTCTTCTATCCCAATGTGTTTGGAAAAACATGTATTATTCTCGTACTCGGATATTGTACGCATGTTTTTTTTTGCTGTATTACTTTGTAAATCGAGTTTTGACTTCAATatctttttaatttattttttgaaTCTGACATGAGCATTTTTGTATTATCGAACCAAAGTGTTtcaatatattaaaaaaatgtatatttgtaaatTGATACGTTTCGATGTGTAGGTGGTAACAGTCATTTTGTAAGCTTTGGTATTTCagcaattttttttattgtttgcTACACTTATTTGTATAAATTAAATAATTGAAACGTTTGGAGTTTCACGCAAGAAAATTTGTCTCCATTTGTGATGGTCTACTCTATTGATTGACTCGTTTTCATATAGCCTATTTGATATTATTACATTCAATTCATAAATGTTTTGTCAATGTGGGCATTTTGTGATTTTGTAATTCTTGTCAATATTTGTTAGTAATGCATTTTTATTCAAATGTGATCCTATCGAGAAAATACACTCGAAATGTGTACCAAACTGCCTTGTAATTTGTCAGTATTTTGAATAAATCGTGTATGATAAAAAAATGTCATTTTCCTTTT

Function

NR:

description
zinc finger protein ZIC 4-like

GO:

id name namespace
GO:0021534 cell proliferation in hindbrain biological_process
GO:0021592 fourth ventricle development biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620030.2 False 3525 mRNA 0.45 2 1843164 1855569
TU1065610 False 1732 lncRNA 0.41 3 1839051 1855581
TU1065611 False 1628 lncRNA 0.40 2 1839051 1855581
TU1065613 True 1712 lncRNA 0.40 4 1839051 1855581

Neighbor

gene id symbol gene type direction distance location
nktr nktr coding upstream 363536 1389373 ~ 1479628 (+)
fam162a e2ig5 coding upstream 478892 1352989 ~ 1364272 (+)
LOC110535150 LOC106590688 coding upstream 983633 742492 ~ 859531 (+)
LOC110535151 LOC106579763 coding upstream 1196203 632123 ~ 646961 (+)
LOC110536523 LOC106563098 coding upstream 1238825 575640 ~ 604339 (+)
si:ch73-206p6.1 LOC106579752 coding downstream 521132 2376701 ~ 2387592 (+)
plod2 LOC106579751 coding downstream 563770 2419339 ~ 2530974 (+)
LOC118937290 NA coding downstream 1392257 3247826 ~ 3249391 (+)
LOC118937434 NA coding downstream 1546483 3402052 ~ 3402867 (+)
jph1a jph1b coding downstream 1667988 3523557 ~ 3616312 (+)
G934582 NA non-coding upstream 13574 1829346 ~ 1829590 (+)
G934581 NA non-coding upstream 13894 1828999 ~ 1829270 (+)
G934578 NA non-coding upstream 17342 1825565 ~ 1825822 (+)
G934577 NA non-coding upstream 17655 1825308 ~ 1825509 (+)
G934576 NA non-coding upstream 18050 1824853 ~ 1825114 (+)
G934614 NA non-coding downstream 18545 1874114 ~ 1874381 (+)
G934627 NA non-coding downstream 33710 1889279 ~ 1889512 (+)
G934630 NA non-coding downstream 36317 1891886 ~ 1892089 (+)
G934635 NA non-coding downstream 45386 1900955 ~ 1901172 (+)
G934637 NA non-coding downstream 47823 1903392 ~ 1903766 (+)
G934579 NA other upstream 15798 1826627 ~ 1827366 (+)
G934256 NA other upstream 347150 1488076 ~ 1496014 (+)
G934169 NA other upstream 535405 1307527 ~ 1307759 (+)
G933799 NA other upstream 891580 949531 ~ 951584 (+)
G933679 NA other upstream 1114959 725187 ~ 728205 (+)
G934640 NA other downstream 53091 1908660 ~ 1909080 (+)
G935846 NA other downstream 1694470 3550039 ~ 3550487 (+)
G935976 NA other downstream 2125202 3980771 ~ 3981151 (+)
G935977 NA other downstream 2126282 3981851 ~ 3982198 (+)
G937051 NA other downstream 3164336 5019905 ~ 5028145 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location