si:ch73-206p6.1 (LOC106579752)


Basic Information

Item Value
gene id si:ch73-206p6.1
gene name LOC106579752
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 2376701 ~ 2387592 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934658.1
GTTTACCATTGGCTGATGCGGGTGGGAAAGGCATCTATATTCTCCAATGAGATTAAAGGTTTTATTCTGAGCTCGTGAAGCGGACTGTCATATTTTTCTTCCAGAATATATGGTTGAATAGCAGCTTGACCTGCTCCCAttaagatgaacacgtaccaggTCCCGAACCCTGGCCTGCCGGGATGCCCACCCGGACTAGAGTATCTAACACAGGTTGATCAGCTACTCATCAAACAGAAAGTCGAGTTTATTGAAGCCCTGGCTGGCTTTGAGAGCAACAACAAGTATGAGGTACGTAATGCCATGGGTCAGAACGTGTTCTATGCTGTGGAGGAGAATGACTGTCTTAGCAGGCAGTGCTGCGGACCCTTACGATCCTTCACAATAAAAGTCCTTGACAACTTTGGACAGGAGGTCATCACAGTCACCAGACCTCTCAAGTGCATGTCCTGTTTCTTCCCCTGCTGTCTGCAAGAGCTGGAGGTGCAGGCCCCCCCAGGGAACACGGTAGGCTACGTGGTCCAGCAGTGGCACCCCTTCTCCCCCAAGTTCATCATAGAGAAtgaacacagagaggctgtgcTGAGGCTGCATGGACCCTTCTGTGGTTGGAGTTGCTTGCCTGATGTTGACTTTGAGATCGTGACCATGGATGAAGTGGATAAGATAGGGAAGATCAGTAAACAGTGGACCGGTCTACTCCGTGAGGCGTTCACGGACGCTGATAACTTTGGGATCCAGTTCCCCATGGATCTGGACGTGAAGATGAAGGCTGTGATGATAGGAGCTTGTTTCCTCGTCGATTTCATGTTCTTTGAGAGCGGTAACCAACCCTAGCAGCTGAGGAGTAGTCTACATCTCAGACAGTCTGCACTCCTGGAGCTATAACTTCCTGCTGGTTCATGGACAAGGTCTCAGATAGACATGGTGCTATGTGTGGGATTCATCTGGTTGGCATGGTAAGAACCATATAAATAGATCTACCAAGGGATTACAGGTGAATGTAATGTAATGGCCGCTGGTACTAGTTTTAGCTTCTGGGGTTGGTACACATTGCAGCTAAATCAGtcaaaccaggtgtgtgtgtgtcagtgttataTATTTAGAGATTGTATATAAAGGAGTGTTCATATGTGTGTTTTTACAGTGTGTACATTGTGGTTGCGTTGCCCACAACCCCCTCAGTCTGATAAAAAGGGTTGTGTGGTACCACTTCACCCATTTACCACATGTGAAAATAAAATGAACACCATCTTTATCTCAACCACTATGCTGAAGGGAAAggaaggagagcagagatgaagaAATGCTATGTAGCTTAAAGAAGAAATCTACAAAAAACATGTTATATTTTTTGGTAAATCGGAAGACCTTAATATGTTCTTGTGTCAACAGTATATTAAGTTACCGTATTACTGCTACTGTGTTTTGCTCGAGACAACTTTTGTATGCAGTATTTTGAGACTTTtgatatttaatttatttatttgtgtatttATGTAGCTtaatattgtttattgttttcatGTGATTGTAATTTGTGGGAAAGTTGACATAATGTTCAGTATTAAAAACATCCTCCAGTGA

Function

NR:

description
phospholipid scramblase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934658.1 True 1587 mRNA 0.44 7 2376701 2387592

Neighbor

gene id symbol gene type direction distance location
LOC110535167 LOC106579754 coding upstream 521132 1839051 ~ 1855581 (+)
nktr nktr coding upstream 897073 1389373 ~ 1479628 (+)
fam162a e2ig5 coding upstream 1012429 1352989 ~ 1364272 (+)
LOC110535150 LOC106590688 coding upstream 1517170 742492 ~ 859531 (+)
LOC110535151 LOC106579763 coding upstream 1729740 632123 ~ 646961 (+)
plod2 LOC106579751 coding downstream 31747 2419339 ~ 2530974 (+)
LOC118937290 NA coding downstream 860234 3247826 ~ 3249391 (+)
LOC118937434 NA coding downstream 1014460 3402052 ~ 3402867 (+)
jph1a jph1b coding downstream 1135965 3523557 ~ 3616312 (+)
LOC110535177 tceb1 coding downstream 1246348 3633940 ~ 3636886 (+)
G935040 NA non-coding upstream 19049 2354174 ~ 2357652 (+)
G935021 NA non-coding upstream 40917 2328025 ~ 2335784 (+)
G935015 NA non-coding upstream 52460 2324022 ~ 2324241 (+)
G935007 NA non-coding upstream 57816 2318636 ~ 2318885 (+)
G934981 NA non-coding upstream 91983 2284459 ~ 2284718 (+)
G935078 NA non-coding downstream 62806 2450398 ~ 2450646 (+)
G935087 NA non-coding downstream 81207 2468799 ~ 2470419 (+)
G935089 NA non-coding downstream 83015 2470607 ~ 2471456 (+)
G935099 LOC106572245 non-coding downstream 126148 2513740 ~ 2514425 (+)
G934640 NA other upstream 467621 1908660 ~ 1909080 (+)
G934579 NA other upstream 549335 1826627 ~ 1827366 (+)
G934256 NA other upstream 880687 1488076 ~ 1496014 (+)
G934169 NA other upstream 1068942 1307527 ~ 1307759 (+)
G933799 NA other upstream 1425117 949531 ~ 951584 (+)
G935846 NA other downstream 1162447 3550039 ~ 3550487 (+)
G935976 NA other downstream 1593179 3980771 ~ 3981151 (+)
G935977 NA other downstream 1594259 3981851 ~ 3982198 (+)
G937051 NA other downstream 2632313 5019905 ~ 5028145 (+)
G937096 xkr9 other downstream 2755725 5143317 ~ 5144565 (+)

Expression


Co-expression Network