plod2 (LOC106579751)


Basic Information

Item Value
gene id plod2
gene name LOC106579751
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 2419339 ~ 2530974 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934660.1
GAGGAAAGCCAGTAAATCGTCGACCCCAAGGTGGGCGTCCTGACCACTAGCGCACAGCAGACTAGCGGAGGAGAAGCAACGGATCGGTCAGTCCCCTAACCCCCGGCTCTGCAACAAGGGACTGCCTGAAAACCCACCGACGACATGGAGTATCTGCCgtttgttgttttattatgtttttccTGGGTACAGTTTATCTCCAACTCAGCAGAAAGCAGTCAACAGCCATTTCCAACAGAGAAGTTGTTGGTCCTCACCGTTGCCACACAGGAGACTGATGGTTATCGCCGCTTCATGCAGTCAGCCGACTATTTCAACTACACTGTCAAGGTCCTGGGcatgggagaggagtggagaggtggggATGTGGGGCGCTCCATTGGAGGAGGACAGAAGGTGAGACTACTGAAGGAAGCCATGGAAGGACTGAGTGACCAAGAAGACCTGGTGGTGCTGTCTGTTGACAGttatgaTCTTATCTTCGCAGGGGGACCAGAGGAGATACTCAGGAAGTTCCAGGAAGCCAATCACAAGGTCCTGTTTGCTGCCGAGGGTTTGGTCTGGCCTGATAAACGCCTACAGGACAAATACCCGTCCGTCCGTAGCGGCAAGCGCTTCCTCAACTCAGGAGGCATCATCGGCTACGCCCCGTATGTGACCAAGATCGTAGAGCAGTGGAACCTTCACGAGAACGATGACGACCAGCTGTTCTACACCAAAATATACCTGGACCCTCAACAGAGGGAGAGTTTGAACATGACTTTGGACCACAAGTCTCAGATTTTCCAGAACTTAAATGGAGCAATCGACGAAGTTCTTCTGAAGTTTGGAACGGAGAGAGTACGAGTCAGAAACACCGTGTACGACACACTTCCAGTGGTCGTCCATGGAAACGCCAACACCAAAATGTATTTGAACTATCTAGGAAACTACATCCCCAACGCCTGGAACTACGAGAGAGGCTGTGGCGTCTGTGACCACAACATGGTGGATTTGTCTCAGCTCAAAGAGTATCCCACTGTGATGGTTGGAGTGTTCATCGAACAgcccactcctttcctctctcaaTTCTTCCAGAGACTCGCGACCCTCGACTACCCCAAACATAAACTTAACGTCTTCGTTCATAACAACgaGGTTTACCATGAGAGACACATCCAGAAGTTTTGGGAGGAAAATAAAGAGGTGTTCAACAGCTTCAAGGTTGTGGGTCCGGAGGAGAACTTGAGCCAAGGAGAGGCCAGGAATATGGGCATGGGGCTGTGTCGTAAGGACCCAGGCTGCGACTACTACCTCAGTATGGACGCTGACGTGATGCTCACCAACAGACAGACCCTGAAGATCCTCATCGAGCAGaacagGAAAATAATTGGCCCCCTTGTCACTCGTCATGGCAAGCTGTGGTCCAACTTCTGGGGTGCGTTGAGTCTGGATGGTTACTATGCCCGTTCTGAAGACTACATCGACATCGTGCAGAGCAAGCGAGTgggcGTGTGGAACATTCCCTACATGGCTCATATATACTTGATAAAGGGAGAAGTCCTGAGAAACGAGCTGAAGGAGAGGAAACATTTTGTTTTGGAGAAACTGGATCCTGACATGGCTCTCTGTAGACACACTAGAGAATTGACCAATCACAGAGAGAAAGACTCCCCCAACCCGGAAACATTCCATATGCTCAGAGTCCCAAAGGGAATATTCATGTACATTACAAACCGCCATGAGTTTGGAAGGCTGATATCCACAGCCAACTTTAACACGTCACACTATAACAGTGATTTGTGGCAAATATTTGAAAATCCAATGGACTGGAAGGAGAAATACATCCACCCCAACTACACACGCATCTTCACAGAGAACTACTTAGAAGAGccgtgTCCAGATGTGTTCTGGTTCCCGGTCTTCACGGAGCGGGCCTGTGATGAGCTGGTGGAGGAGATGGAACACTACGGGTCCTGGTCTGGAGGCAACCAcgagGACAAGAGGATCACTGGCGGCTATGAGACCGTGCCGACTGATGACATCCACATGAAGCAGATCGGTTACGATAAGGAGTGGCTACACTTCATCAGAGAGTTCATTTCCCCCGTCACTCTCAAAGTCTTCTCCGGATACTACACCAagGGCTATGCAGTGATGAACTTCGTGGTGAAGTACACCCCCGGCAGACAGGCCTACCTGAGACCCCATCACGACTCCTCCACATTCACCATCAACGTTGCTCTCAACAGCAAAGGAACTGACTTCCAGggTGGAGGCTGTTGGTTCCACAGGTATAACTGCTcactagatccccccccccctctctctctctccagggtgggGGCTGGCGGTTCCACAGGTATAACTGCTCACTAgattcccccctcccct
>XM_036934659.1
GCCAGTAAATCGTCGACCCCAAGGTGGGCGTCCTGACCACTAGCGCACAGCAGACTAGCGGAGGAGAAGCAACGGATCGGTCAGTCCCCTAACCCCCGGCTCTGCAACAAGGGACTGCCTGAAAACCCACCGACGACATGGAGTATCTGCCgtttgttgttttattatgtttttccTGGGTACAGTTTATCTCCAACTCAGCAGAAAGCAGTCAACAGCCATTTCCAACAGAGAAGTTGTTGGTCCTCACCGTTGCCACACAGGAGACTGATGGTTATCGCCGCTTCATGCAGTCAGCCGACTATTTCAACTACACTGTCAAGGTCCTGGGcatgggagaggagtggagaggtggggATGTGGGGCGCTCCATTGGAGGAGGACAGAAGGTGAGACTACTGAAGGAAGCCATGGAAGGACTGAGTGACCAAGAAGACCTGGTGGTGCTGTCTGTTGACAGttatgaTCTTATCTTCGCAGGGGGACCAGAGGAGATACTCAGGAAGTTCCAGGAAGCCAATCACAAGGTCCTGTTTGCTGCCGAGGGTTTGGTCTGGCCTGATAAACGCCTACAGGACAAATACCCGTCCGTCCGTAGCGGCAAGCGCTTCCTCAACTCAGGAGGCATCATCGGCTACGCCCCGTATGTGACCAAGATCGTAGAGCAGTGGAACCTTCACGAGAACGATGACGACCAGCTGTTCTACACCAAAATATACCTGGACCCTCAACAGAGGGAGAGTTTGAACATGACTTTGGACCACAAGTCTCAGATTTTCCAGAACTTAAATGGAGCAATCGACGAAGTTCTTCTGAAGTTTGGAACGGAGAGAGTACGAGTCAGAAACACCGTGTACGACACACTTCCAGTGGTCGTCCATGGAAACGCCAACACCAAAATGTATTTGAACTATCTAGGAAACTACATCCCCAACGCCTGGAACTACGAGAGAGGCTGTGGCGTCTGTGACCACAACATGGTGGATTTGTCTCAGCTCAAAGAGTATCCCACTGTGATGGTTGGAGTGTTCATCGAACAgcccactcctttcctctctcaaTTCTTCCAGAGACTCGCGACCCTCGACTACCCCAAACATAAACTTAACGTCTTCGTTCATAACAACgaGGTTTACCATGAGAGACACATCCAGAAGTTTTGGGAGGAAAATAAAGAGGTGTTCAACAGCTTCAAGGTTGTGGGTCCGGAGGAGAACTTGAGCCAAGGAGAGGCCAGGAATATGGGCATGGGGCTGTGTCGTAAGGACCCAGGCTGCGACTACTACCTCAGTATGGACGCTGACGTGATGCTCACCAACAGACAGACCCTGAAGATCCTCATCGAGCAGaacagGAAAATAATTGGCCCCCTTGTCACTCGTCATGGCAAGCTGTGGTCCAACTTCTGGGGTGCGTTGAGTCTGGATGGTTACTATGCCCGTTCTGAAGACTACATCGACATCGTGCAGAGCAAGCGAGTgggcGTGTGGAACATTCCCTACATGGCTCATATATACTTGATAAAGGGAGAAGTCCTGAGAAACGAGCTGAAGGAGAGGAAACATTTTGTTTTGGAGAAACTGGATCCTGACATGGCTCTCTGTAGACACACTAGAGAATTGACCAATCACAGAGAGAAAGACTCCCCCAACCCGGAAACATTCCATATGCTCAGAGTCCCAAAGGGAATATTCATGTACATTACAAACCGCCATGAGTTTGGAAGGCTGATATCCACAGCCAACTTTAACACGTCACACTATAACAGTGATTTGTGGCAAATATTTGAAAATCCAATGGACTGGAAGGAGAAATACATCCACCCCAACTACACACGCATCTTCACAGAGAACTACTTAGAAGAGccgtgTCCAGATGTGTTCTGGTTCCCGGTCTTCACGGAGCGGGCCTGTGATGAGCTGGTGGAGGAGATGGAACACTACGGGTCCTGGTCTGGAGGCAACCAcgagGACAAGAGGATCACTGGCGGCTATGAGACCGTGCCGACTGATGACATCCACATGAAGCAGATCGGTTACGATAAGGAGTGGCTACACTTCATCAGAGAGTTCATTTCCCCCGTCACTCTCAAAGTCTTCTCCGGATACTACACCAagGGCTATGCAGTGATGAACTTCGTGGTGAAGTACACCCCCGGCAGACAGGCCTACCTGAGACCCCATCACGACTCCTCCACATTCACCATCAACGTTGCTCTCAACAGCAAAGGAACTGACTTCCAGggTGGAGGCTGTCGGTTCCACAGGTATAACTGCTCCGTAGATTCTCCCAGGAAGGGCTGGAGTTTCATGCACCCAGGCCGTCTGACACACCTCCACGAAGGCCTGCCCACCACCAACGGAACTCGCTACATTGCTGTCTCCTTCATCGACCCTTGAACTCGACACTACACTAGCATAGGATTTGATCAGGTTtcattttttgtaattttttttgttgtgtttaaTTTTATCTATTTTGTTTGTAATGATAAAGTGCCTTATGTTGTACTTTATACATTTTTACTGATGCCAGTTactgtacaaataaataaatagtttaaaaagacaaaggaattgtggGTAATGTCATGCCAGAGTCAGACGATCCCCTTCATTTGAAACTCTCTGTCAAACAGAGTGTGGTGTCATGAAGGGACGTGATGTCATCACTGTCAGTCGGCGGTTTTAGGTAAAGCTTCATCTTCAAATCACTCTATACTGTAATAATCATTATTTATTAGTCAGCAATCCAACCCATCCTCTTAAGGGGAAAAAAATCTATGTGTTAAGGATTAATGCCAACGGGTATTCCTGGCTTGTCTTAGCTGTTTTAATTAAATTACTTGTTTGTATGTTTCACATTAAGTTGTCTAGTTTGGAAACCATTTTCCATGTTCTGTCTACACCTTTTTTGTAAACTTTGGGTTGCAGTTTGTTACCTGATGTTAATATGACCTACATGCCCAAGGAAATATATTAAAATTGTTGGTAACTTAGCACACGAGATAATAAAATATATGACATCGGAATTGAATATGAATTCTGGATTTCTAGTTCGATATTGGCAAAGAAATGTTTTACTTGATTGTTGATTGTTTACAGGACAGCCGTTGATGGCGTTTCCTTCCTGAACTGAAACGTTTTAGAGATGTTTACATTCTCTGAAAGTTGTTTGTGAACTTTGAACCTAAGTTAACTTATTGTGATGGAAACGGaataaaatatgtttaaaaaaaaaaaaa
>XM_036934661.1
GCCAGTAAATCGTCGACCCCAAGGTGGGCGTCCTGACCACTAGCGCACAGCAGACTAGCGGAGGAGAAGCAACGGATCGGTCAGTCCCCTAACCCCCGGCTCTGCAACAAGGGACTGCCTGAAAACCCACCGACGACATGGAGTATCTGCCgtttgttgttttattatgtttttccTGGGTACAGTTTATCTCCAACTCAGCAGAAAGCAGTCAACAGCCATTTCCAACAGAGAAGTTGTTGGTCCTCACCGTTGCCACACAGGAGACTGATGGTTATCGCCGCTTCATGCAGTCAGCCGACTATTTCAACTACACTGTCAAGGTCCTGGGcatgggagaggagtggagaggtggggATGTGGGGCGCTCCATTGGAGGAGGACAGAAGGTGAGACTACTGAAGGAAGCCATGGAAGGACTGAGTGACCAAGAAGACCTGGTGGTGCTGTCTGTTGACAGttatgaTCTTATCTTCGCAGGGGGACCAGAGGAGATACTCAGGAAGTTCCAGGAAGCCAATCACAAGGTCCTGTTTGCTGCCGAGGGTTTGGTCTGGCCTGATAAACGCCTACAGGACAAATACCCGTCCGTCCGTAGCGGCAAGCGCTTCCTCAACTCAGGAGGCATCATCGGCTACGCCCCGTATGTGACCAAGATCGTAGAGCAGTGGAACCTTCACGAGAACGATGACGACCAGCTGTTCTACACCAAAATATACCTGGACCCTCAACAGAGGGAGAGTTTGAACATGACTTTGGACCACAAGTCTCAGATTTTCCAGAACTTAAATGGAGCAATCGACGAAGTTCTTCTGAAGTTTGGAACGGAGAGAGTACGAGTCAGAAACACCGTGTACGACACACTTCCAGTGGTCGTCCATGGAAACGCCAACACCAAAATGTATTTGAACTATCTAGGAAACTACATCCCCAACGCCTGGAACTACGAGAGAGGCTGTGGCGTCTGTGACCACAACATGGTGGATTTGTCTCAGCTCAAAGAGTATCCCACTGTGATGGTTGGAGTGTTCATCGAACAgcccactcctttcctctctcaaTTCTTCCAGAGACTCGCGACCCTCGACTACCCCAAACATAAACTTAACGTCTTCGTTCATAACAACgaGGTTTACCATGAGAGACACATCCAGAAGTTTTGGGAGGAAAATAAAGAGGTGTTCAACAGCTTCAAGGTTGTGGGTCCGGAGGAGAACTTGAGCCAAGGAGAGGCCAGGAATATGGGCATGGGGCTGTGTCGTAAGGACCCAGGCTGCGACTACTACCTCAGTATGGACGCTGACGTGATGCTCACCAACAGACAGACCCTGAAGATCCTCATCGAGCAGaacagGAAAATAATTGGCCCCCTTGTCACTCGTCATGGCAAGCTGTGGTCCAACTTCTGGGGTGCGTTGAGTCTGGATGGTTACTATGCCCGTTCTGAAGACTACATCGACATCGTGCAGAGCAAGCGAGTgggcGTGTGGAACATTCCCTACATGGCTCATATATACTTGATAAAGGGAGAAGTCCTGAGAAACGAGCTGAAGGAGAGGAAACATTTTGTTTTGGAGAAACTGGATCCTGACATGGCTCTCTGTAGACACACTAGAGAATTGGGAATATTCATGTACATTACAAACCGCCATGAGTTTGGAAGGCTGATATCCACAGCCAACTTTAACACGTCACACTATAACAGTGATTTGTGGCAAATATTTGAAAATCCAATGGACTGGAAGGAGAAATACATCCACCCCAACTACACACGCATCTTCACAGAGAACTACTTAGAAGAGccgtgTCCAGATGTGTTCTGGTTCCCGGTCTTCACGGAGCGGGCCTGTGATGAGCTGGTGGAGGAGATGGAACACTACGGGTCCTGGTCTGGAGGCAACCAcgagGACAAGAGGATCACTGGCGGCTATGAGACCGTGCCGACTGATGACATCCACATGAAGCAGATCGGTTACGATAAGGAGTGGCTACACTTCATCAGAGAGTTCATTTCCCCCGTCACTCTCAAAGTCTTCTCCGGATACTACACCAagGGCTATGCAGTGATGAACTTCGTGGTGAAGTACACCCCCGGCAGACAGGCCTACCTGAGACCCCATCACGACTCCTCCACATTCACCATCAACGTTGCTCTCAACAGCAAAGGAACTGACTTCCAGggTGGAGGCTGTCGGTTCCACAGGTATAACTGCTCCGTAGATTCTCCCAGGAAGGGCTGGAGTTTCATGCACCCAGGCCGTCTGACACACCTCCACGAAGGCCTGCCCACCACCAACGGAACTCGCTACATTGCTGTCTCCTTCATCGACCCTTGAACTCGACACTACACTAGCATAGGATTTGATCAGGTTtcattttttgtaattttttttgttgtgtttaaTTTTATCTATTTTGTTTGTAATGATAAAGTGCCTTATGTTGTACTTTATACATTTTTACTGATGCCAGTTactgtacaaataaataaatagtttaaaaagacaaaggaattgtggGTAATGTCATGCCAGAGTCAGACGATCCCCTTCATTTGAAACTCTCTGTCAAACAGAGTGTGGTGTCATGAAGGGACGTGATGTCATCACTGTCAGTCGGCGGTTTTAGGTAAAGCTTCATCTTCAAATCACTCTATACTGTAATAATCATTATTTATTAGTCAGCAATCCAACCCATCCTCTTAAGGGGAAAAAAATCTATGTGTTAAGGATTAATGCCAACGGGTATTCCTGGCTTGTCTTAGCTGTTTTAATTAAATTACTTGTTTGTATGTTTCACATTAAGTTGTCTAGTTTGGAAACCATTTTCCATGTTCTGTCTACACCTTTTTTGTAAACTTTGGGTTGCAGTTTGTTACCTGATGTTAATATGACCTACATGCCCAAGGAAATATATTAAAATTGTTGGTAACTTAGCACACGAGATAATAAAATATATGACATCGGAATTGAATATGAATTCTGGATTTCTAGTTCGATATTGGCAAAGAAATGTTTTACTTGATTGTTGATTGTTTACAGGACAGCCGTTGATGGCGTTTCCTTCCTGAACTGAAACGTTTTAGAGATGTTTACATTCTCTGAAAGTTGTTTGTGAACTTTGAACCTAAGTTAACTTATTGTGATGGAAACGGaataaaatatgtttaaaaaaaaaaaaa
>TU1066214
TATTTTGTTTGTAATGATAAAGTGCCTTATGTTGTACTTTATACATTTTTACTGATGCCAGTTactgtacaaataaataaatagtttaaaaagacaaaggaattgtggGTAATGTCATGCCAGAGTCAGACGATCCCCTTCATTTGAAACTCTCTGTCAAACAGAGTGTGGTGTCATGAAGGGACGTGATGTCATCACTGTCAGTCGGCGGTTTTAGGTAAAGCTTCATCTTCAAATCACTCTATACTGTAATAATCATTATTTATTAGTCAGCAATCCAACCCATCCTCTTAAGGGGAAAAAAATCTATGTGTTAAGGATTAATGCCAACGGGTATTCCTGGCTTGTCTTAGCTGTTTTAATTAAATTACTTGTTTGTATGTTTCACATTAAGTTGTCTAGTTTGGAAACCATTTTCCATGTTCTGTCTACACCTTTTTTGTAAACTTTGGGTTGCAGTTTGTTACCTGATGTTAATATGACCTACATGCCCAAGGAAATATATTAAAATTGTTGGTAACTTAGCACACGAGATAATAAAATATATGACATCGGAATTGAATATGAATTCTGGATTTCTAGTTCGATATTGGCAAAGAAATGTTTTACTTGATTGTTGATTGTTTACAGGACAGCCGTTGATGGCGTTTCCTTCCTGAACTGAAACGTTTTAGAGATGTTTACATTCTCTGAAAGTTGTTTGTGAACTTTGAACCTAAGTTAACTTATTGTGATGGAAACGGaa

Function

NR:

description
PREDICTED: procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005506 iron ion binding molecular_function
GO:0008475 procollagen-lysine 5-dioxygenase activity molecular_function
GO:0031418 L-ascorbic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934660.1 False 2373 mRNA 0.51 20 2419339 2529660
XM_036934659.1 False 3244 mRNA 0.46 20 2419346 2530974
XM_036934661.1 False 3181 mRNA 0.46 19 2419346 2530974
TU1066214 True 745 lncRNA 0.34 1 2530205 2530949

Neighbor

gene id symbol gene type direction distance location
si:ch73-206p6.1 LOC106579752 coding upstream 31747 2376701 ~ 2387592 (+)
LOC110535167 LOC106579754 coding upstream 563770 1839051 ~ 1855581 (+)
nktr nktr coding upstream 939711 1389373 ~ 1479628 (+)
fam162a e2ig5 coding upstream 1055067 1352989 ~ 1364272 (+)
LOC110535150 LOC106590688 coding upstream 1559808 742492 ~ 859531 (+)
LOC118937290 NA coding downstream 716852 3247826 ~ 3249391 (+)
LOC118937434 NA coding downstream 871078 3402052 ~ 3402867 (+)
jph1a jph1b coding downstream 992583 3523557 ~ 3616312 (+)
LOC110535177 tceb1 coding downstream 1102966 3633940 ~ 3636886 (+)
flj11011l ube2w coding downstream 1121821 3652795 ~ 3676466 (+)
G935040 NA non-coding upstream 61687 2354174 ~ 2357652 (+)
G935021 NA non-coding upstream 83555 2328025 ~ 2335784 (+)
G935015 NA non-coding upstream 95098 2324022 ~ 2324241 (+)
G935007 NA non-coding upstream 100454 2318636 ~ 2318885 (+)
G934981 NA non-coding upstream 134621 2284459 ~ 2284718 (+)
G935196 NA non-coding downstream 41759 2572733 ~ 2573076 (+)
G935219 NA non-coding downstream 114609 2645583 ~ 2645824 (+)
G935221 NA non-coding downstream 115049 2646023 ~ 2646251 (+)
G935231 NA non-coding downstream 122208 2653182 ~ 2653387 (+)
G935244 NA non-coding downstream 132681 2663655 ~ 2664028 (+)
G934640 NA other upstream 510259 1908660 ~ 1909080 (+)
G934579 NA other upstream 591973 1826627 ~ 1827366 (+)
G934256 NA other upstream 923325 1488076 ~ 1496014 (+)
G934169 NA other upstream 1111580 1307527 ~ 1307759 (+)
G933799 NA other upstream 1467755 949531 ~ 951584 (+)
G935846 NA other downstream 1019065 3550039 ~ 3550487 (+)
G935976 NA other downstream 1449797 3980771 ~ 3981151 (+)
G935977 NA other downstream 1450877 3981851 ~ 3982198 (+)
G937051 NA other downstream 2488931 5019905 ~ 5028145 (+)
G937096 xkr9 other downstream 2612343 5143317 ~ 5144565 (+)
G935099 LOC106572245 non-coding upstream 15780 2513740 ~ 2514425 (+)
G935089 NA non-coding upstream 58749 2470607 ~ 2471456 (+)
G935087 NA non-coding upstream 59786 2468799 ~ 2470419 (+)
G935078 NA non-coding upstream 79559 2450398 ~ 2450646 (+)

Expression


Co-expression Network