LOC110536527 (trpa1)


Basic Information

Item Value
gene id LOC110536527
gene name trpa1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 4491768 ~ 4568591 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934674.1
ACTGAACTGTGACAACTACAGTACATAAACCATTACTTGCCCCGTACTGGGAGACCACAGCAGTCTGCTCTACTCAGAGGCAGTCAGCatccaaccagccaaccaaccaaccagcctaACCACTAAAGAGTGATTGGACTGTGAGACCTCATGCAGCTCACCAAGGAAGTGGCACCTCAGAACGGTTCCTATAAGTGCGTGATCGACGATGACGAAAGAAGATCTCACCAACTCTCTGTAAAAACAGACATCACTCTGGAGTCCGTAAACCTGTTTGAGTGGGCTCGGGGAGGTGATGTGTCCCAGCTGGAGGGCTTGGTGAGGAGGAACCCAGGAGTACTGAGGGAACAGGATGACTCTGGTGCCTCTCTGGTCCACCACGCTGCTGGTGCAGGAAACACCCCTGTTATCAGGTTAATCTGCAGCATCACAGTCAGAGATGggTGGAAGGTGTATGATGACGAGGGGTCTATGCCGCTGCACTGGGCCGTGGAGAGGAACCAGCCAGACAGCTGCAGGGCTCTGTTAGAGCTGGGGGCTGAACCTAACGTCCTCAACAAGGCCCTGATGTCACCTCTACACCTGGCTGTtagccacacacacaaccatctgGTCCAGCTCCTGTTGTCTCACTATAAGACAGAGTCTAACCTAGAAGGAGGTCTTGGCAACACTCCAGTCATGTTAGCCTGCTCCATCAACAATACTGAGGCGCTCTCTATACTGCTGAGCCATGGGGCGCGGCTCTCCAGTCAGAACAAACTGGGCCAGTATGCTATCCATGCAGCTGCCTTCGCAGGCTCAAAGAAAGCCATGGATGTCATCCTCAAGGCTGGAGAGGAGATGGGTCATTCCATAGAGGAACACATTAATTTCCTGGATAAGTCATACAGTAGTCCACTTCACCTGGCGGTCAGGGGAGGCAACATGGACATCATCGAGTTCTGCATCCACAAAGGAGCCAAGATCGACCAACAACAGGTGGACCGGTCCACAGCTCTACATTTTGCCTGTTCCCAGGGAGCTACAGAGGCAGTTAAACTGATGCTGTCCTCCTACAGCAGACTGGACAGCATCATTAACCTGCCTGATGGAGCCTGCCAGACACCTCTACACAGGGCAACTATATTTGATCACACAGAATTGGCGGAGTACCTCATTTCAAAGGGTGCAGACATTGACTACATTGACAGTAAGGGTCTTTCCCCCTTGCTGCTGGCTACTAACTGTGGAGCCTGGAGAACTGTGGCTCTTCTGCTGTCCAAAGgtGCCAACGTGAACATAAAGGACCAATCAGGATGTAACTTCCTCCACCTGGCCATCCTGCAACCCAAAGGCCTCAAAAATCTCTCCGGGGACGTCTTGCAGCACAGCAGTGTGAAGGATCTGTTGAGTAACGAGGACAACGAGGGCTGTACTCCTCTCCACTACGCCTGCAGACTGGGCATCCACGAATCGGTCAAGAACATCCTGGTTCTACAGGTCTCTCTGGACCGCAAGTCCAAGGACAAGAAGTCAGCCCTGCACTTCGCTGCCCAGTATGGTCGTGTCAACACCTGCCAGCGTCTACTGGAGACCATCACAGACTCCCGTCTGCTGAACGAGGGGGACGAGAGAGGCCTGACCCCCCTACACCTGGCCTCTGGAGGGGGACACACCAAAGTGGTGGAGCTGCTGCTTCGTAAAGGAGCCCTGTTTCACTGTGATTACAAAGGGAGGACCTGTTTGCACCATGCAGCGGCAGAGGGGTACACCCAGACCATGAAGATCGTCCTGGCCACCAACATCAAACTACTGGACAAGCTGGATGAGGATGGGAGCACTGCGCTGCACTTGGCAGCCCGGGAGGGTCACGTAGCAGCGGTGAGACTGCTTCTCCAGAGAGGGGCGGAGATCAGCCTCAACAAGAACCACGCCTCCTTCTTCCACGAAGCACTGCAACATGGGAGGAAGGATGTGATTAACGCCATCATCGACAGTGACAGATGTACTCACATCCTGAGTATGTTCAAACGTGATGCTGGCCGTCGTTGTCCAGTGTTGGACCTGGTTGACTTGCTGCCAGAGTCTTGCAAGTACCTTCTGGATCGCTGCATTAGAGAATCAGACGACGATACCAGAAGTCCTGACTACCATATCGACTACAATTTCCAGTGGCTTCAGGCTCCAATAGCACTGACGAAGCACGCAAAGGTAGACAAAGGCCTGAAGATCCAGCCTCTGGCCACTCTGAATgcCATGGTGAAATACAACCGCATAGAGCTCCTCTCACACCCCGTCTGCAAGAAATACCTGGAGATGAAGTGGGTGGCCTACGGGAGCGCTGCCCACCTTCTGAACCTGTTCGTGTACCTGCTGGGTCTGCTTCCTCTCACCCACCTCATAGTGAGCCTGAGACCCAGCCTGGACTACACCAGCCCTGACAACACCACAGCTGTCACCATGGTGCCCATTTCCTTCAGAGAGCAAGGTTCCTTCCTGTCCGGCTGCATGGTGATGGTGCTGGTGAtgaacatttattccatggggaAGGAAGTGACGCAGATGTACCACCAGCGTTTGAGTTACTTCAAGGATCCCTTTAACTATCAGGACTGGACCGTGGccatcttctctcttctcttcgtCATCCCCCTGAATTTCAACGTTGAGGGGTCTTGGTACTGGCAGGCTGGGGCGATGGCAGTCTTTCAATCCTGGATTAGCTTCCTATTCTATCTGCAAAGGTTTGAGCACTTTGGGATTTACGTGGTGATGTTTAACGAGATTGCGAAGACATTGTGGAAAATCCTACTGCTTTTCTTCTTTCTGATGCTGGCGTTTGCCTTGGTCTTCCATGCCCTCATGCTCAATCAGAAAGAGTTTGAGCGACTGGACCTGTCTGGGGTCCAGATCTTTGTGATGATGGTTGGAGAACTGAATTACCAAAGCAACATTCTGGACATATACCTAGACAACAAACTTCCATTTCCCTTCCTCACTTTCTACATGTTTGTGGTGTTTGTCATCCTCATGCCGATCCTGCTGATGAACATGATGATCGGTTTGGCAGTCGGAGACATCGCTGAGGTAAAGAGAACCGCAGGTCTGAAGAGAATAGCCATGCAGATCGAGCTCCACACCAATCTGGAGGAGAAGATGCCGTACTGGTTGTTGAAGAGAGTAGACCAGTCATTCTTCACCATCTACCCCAACCGCAAGTGCTCCAAGGCCTCAATACTTAATTTCTGGAGTCAAGGAGAAGCAAACGAAGTGCAGACTCGTCTAATGACCAACTCATCAAATTCAACCTCTGTCGAGGCTGAACTACGCAGACAGAAGTACAgACTGAAGGAGATATCCAGTGTGCTGGAGAAGCAGCACGACCTGATGAAGCTGATGATCCAGAAGATGGAGATCACATCGGAGGCAGACGAACATGACGGGCCCACAGAGGTCAAAGGTTACAGGCAGAGGTCAAACTGGGGCCAAGCCAAGGGCTCCAACTGGATCCCGCTGATGAAGGTCCTCGAGCGCAAGAACGTTTGAGTCCTTCAATTTACTGGTGACtaagggttgcaaaattccattTTGTCGGGTTTTCCAGGAATCCTGGGTGGAAGATCCCTGGGATCAGAAGGAAATAAACAAAAGATCCAGAAACCTCCAACCAGGATTTGTGAAAACCAGGGAAATATTTAGGAAAGACCAGAATTGTAAATCCTCATTCATGACCATCAACAATATGATAagaatatttaaaatatataagaTTTTCATTTTTATATATACAATACTTGAACTGATATTGTTTTAAAAATTTACTGTAGGATACTATGATTAGCATGAATGACTTCATCATTGGGGATACTATTTCTGATGCACTTTTGATTGGTTAAttatggatctctctctctctctctctctctctctctgcaaacaCTATACTTGTATTTCTCAATGTGTTCATAGATTATTGTGTGCACGTAATAATAATTGCATGTGATTGAAATGATTTGAATAGTGTATGTATATTTTATAACCTGTCTGAAACATACTGGAACTGAATGGTTGTATTTTGGGTGGAACCATTAAAAATTGTCAAATCGTCCCCATACATTGTGctcatgcctctccctaatatcaatatgacttgtccattactgtcctggttagtgattactgtcttattt
>XM_036934675.1
ataaggctgtttaggttttcacggtacgtttattgttttgttcgtgTTTTATCtttcattaaacatgtatcataataaccacgctgcattttggtccgatcttcagaggaagaggagaaagtaAACCGTAACATACCCCTTTAAATGTTTTCCCCCCTTTTTGTCCACagtgtccacagtgtccctatcgtctagtttgaacagttctgtaaaaaacattgcatccagagtgcatcaaacatgatttagatttttcgCCCCACATTTTTGtcacagtctgaatttaaaatggattagaCTACACTTTGTTTTGTCCGATAACGATTGACATGACGTCAAAGTGGAATCATCTATCAATATTTtgactattttatttttttaactatgAAAAGCTGaagtgtcttgagtcaataagtattcaacctctttgttacgTGATTGGACTGTGAGACCTCATGCAGCTCACCAAGGAAGTGGCACCTCAGAACGGTTCCTATAAGTGCGTGATCGACGATGACGAAAGAAGATCTCACCAACTCTCTGTAAAAACAGACATCACTCTGGAGTCCGTAAACCTGTTTGAGTGGGCTCGGGGAGGTGATGTGTCCCAGCTGGAGGGCTTGGTGAGGAGGAACCCAGGAGTACTGAGGGAACAGGATGACTCTGGTGCCTCTCTGGTCCACCACGCTGCTGGTGCAGGAAACACCCCTGTTATCAGGTTAATCTGCAGCATCACAGTCAGAGATGggTGGAAGGTGTATGATGACGAGGGGTCTATGCCGCTGCACTGGGCCGTGGAGAGGAACCAGCCAGACAGCTGCAGGGCTCTGTTAGAGCTGGGGGCTGAACCTAACGTCCTCAACAAGGCCCTGATGTCACCTCTACACCTGGCTGTtagccacacacacaaccatctgGTCCAGCTCCTGTTGTCTCACTATAAGACAGAGTCTAACCTAGAAGGAGGTCTTGGCAACACTCCAGTCATGTTAGCCTGCTCCATCAACAATACTGAGGCGCTCTCTATACTGCTGAGCCATGGGGCGCGGCTCTCCAGTCAGAACAAACTGGGCCAGTATGCTATCCATGCAGCTGCCTTCGCAGGCTCAAAGAAAGCCATGGATGTCATCCTCAAGGCTGGAGAGGAGATGGGTCATTCCATAGAGGAACACATTAATTTCCTGGATAAGTCATACAGTAGTCCACTTCACCTGGCGGTCAGGGGAGGCAACATGGACATCATCGAGTTCTGCATCCACAAAGGAGCCAAGATCGACCAACAACAGGTGGACCGGTCCACAGCTCTACATTTTGCCTGTTCCCAGGGAGCTACAGAGGCAGTTAAACTGATGCTGTCCTCCTACAGCAGACTGGACAGCATCATTAACCTGCCTGATGGAGCCTGCCAGACACCTCTACACAGGGCAACTATATTTGATCACACAGAATTGGCGGAGTACCTCATTTCAAAGGGTGCAGACATTGACTACATTGACAGTAAGGGTCTTTCCCCCTTGCTGCTGGCTACTAACTGTGGAGCCTGGAGAACTGTGGCTCTTCTGCTGTCCAAAGgtGCCAACGTGAACATAAAGGACCAATCAGGATGTAACTTCCTCCACCTGGCCATCCTGCAACCCAAAGGCCTCAAAAATCTCTCCGGGGACGTCTTGCAGCACAGCAGTGTGAAGGATCTGTTGAGTAACGAGGACAACGAGGGCTGTACTCCTCTCCACTACGCCTGCAGACTGGGCATCCACGAATCGGTCAAGAACATCCTGGTTCTACAGGTCTCTCTGGACCGCAAGTCCAAGGACAAGAAGTCAGCCCTGCACTTCGCTGCCCAGTATGGTCGTGTCAACACCTGCCAGCGTCTACTGGAGACCATCACAGACTCCCGTCTGCTGAACGAGGGGGACGAGAGAGGCCTGACCCCCCTACACCTGGCCTCTGGAGGGGGACACACCAAAGTGGTGGAGCTGCTGCTTCGTAAAGGAGCCCTGTTTCACTGTGATTACAAAGGGAGGACCTGTTTGCACCATGCAGCGGCAGAGGGGTACACCCAGACCATGAAGATCGTCCTGGCCACCAACATCAAACTACTGGACAAGCTGGATGAGGATGGGAGCACTGCGCTGCACTTGGCAGCCCGGGAGGGTCACGTAGCAGCGGTGAGACTGCTTCTCCAGAGAGGGGCGGAGATCAGCCTCAACAAGAACCACGCCTCCTTCTTCCACGAAGCACTGCAACATGGGAGGAAGGATGTGATTAACGCCATCATCGACAGTGACAGATGTACTCACATCCTGAGTATGTTCAAACGTGATGCTGGCCGTCGTTGTCCAGTGTTGGACCTGGTTGACTTGCTGCCAGAGTCTTGCAAGTACCTTCTGGATCGCTGCATTAGAGAATCAGACGACGATACCAGAAGTCCTGACTACCATATCGACTACAATTTCCAGTGGCTTCAGGCTCCAATAGCACTGACGAAGCACGCAAAGGTAGACAAAGGCCTGAAGATCCAGCCTCTGGCCACTCTGAATgcCATGGTGAAATACAACCGCATAGAGCTCCTCTCACACCCCGTCTGCAAGAAATACCTGGAGATGAAGTGGGTGGCCTACGGGAGCGCTGCCCACCTTCTGAACCTGTTCGTGTACCTGCTGGGTCTGCTTCCTCTCACCCACCTCATAGTGAGCCTGAGACCCAGCCTGGACTACACCAGCCCTGACAACACCACAGCTGTCACCATGGTGCCCATTTCCTTCAGAGAGCAAGGTTCCTTCCTGTCCGGCTGCATGGTGATGGTGCTGGTGAtgaacatttattccatggggaAGGAAGTGACGCAGATGTACCACCAGCGTTTGAGTTACTTCAAGGATCCCTTTAACTATCAGGACTGGACCGTGGccatcttctctcttctcttcgtCATCCCCCTGAATTTCAACGTTGAGGGGTCTTGGTACTGGCAGGCTGGGGCGATGGCAGTCTTTCAATCCTGGATTAGCTTCCTATTCTATCTGCAAAGGTTTGAGCACTTTGGGATTTACGTGGTGATGTTTAACGAGATTGCGAAGACATTGTGGAAAATCCTACTGCTTTTCTTCTTTCTGATGCTGGCGTTTGCCTTGGTCTTCCATGCCCTCATGCTCAATCAGAAAGAGTTTGAGCGACTGGACCTGTCTGGGGTCCAGATCTTTGTGATGATGGTTGGAGAACTGAATTACCAAAGCAACATTCTGGACATATACCTAGACAACAAACTTCCATTTCCCTTCCTCACTTTCTACATGTTTGTGGTGTTTGTCATCCTCATGCCGATCCTGCTGATGAACATGATGATCGGTTTGGCAGTCGGAGACATCGCTGAGGTAAAGAGAACCGCAGGTCTGAAGAGAATAGCCATGCAGATCGAGCTCCACACCAATCTGGAGGAGAAGATGCCGTACTGGTTGTTGAAGAGAGTAGACCAGTCATTCTTCACCATCTACCCCAACCGCAAGTGCTCCAAGGCCTCAATACTTAATTTCTGGAGTCAAGGAGAAGCAAACGAAGTGCAGACTCGTCTAATGACCAACTCATCAAATTCAACCTCTGTCGAGGCTGAACTACGCAGACAGAAGTACAgACTGAAGGAGATATCCAGTGTGCTGGAGAAGCAGCACGACCTGATGAAGCTGATGATCCAGAAGATGGAGATCACATCGGAGGCAGACGAACATGACGGGCCCACAGAGGTCAAAGGTTACAGGCAGAGGTCAAACTGGGGCCAAGCCAAGGGCTCCAACTGGATCCCGCTGATGAAGGTCCTCGAGCGCAAGAACGTTTGAGTCCTTCAATTTACTGGTGACtaagggttgcaaaattccattTTGTCGGGTTTTCCAGGAATCCTGGGTGGAAGATCCCTGGGATCAGAAGGAAATAAACAAAAGATCCAGAAACCTCCAACCAGGATTTGTGAAAACCAGGGAAATATTTAGGAAAGACCAGAATTGTAAATCCTCATTCATGACCATCAACAATATGATAagaatatttaaaatatataagaTTTTCATTTTTATATATACAATACTTGAACTGATATTGTTTTAAAAATTTACTGTAGGATACTATGATTAGCATGAATGACTTCATCATTGGGGATACTATTTCTGATGCACTTTTGATTGGTTAAttatggatctctctctctctctctctctctctctctgcaaacaCTATACTTGTATTTCTCAATGTGTTCATAGATTATTGTGTGCACGTAATAATAATTGCATGTGATTGAAATGATTTGAATAGTGTATGTATATTTTATAACCTGTCTGAAACATACTGGAACTGAATGGTTGTATTTTGGGTGGAACCATTAAAAATTGTCAAATCGTCCCCATACATTGTGctcatgcctctccctaatatcaatatgacttgtccattactgtcctggttagtgattactgtcttattt

Function

symbol description
trpa1 Enables calcium-release channel activity; identical protein binding activity; and temperature-gated cation channel activity. Involved in several processes, including calcium ion transmembrane transport; protein homotetramerization; and sensory perception of pain. Is integral component of plasma membrane. Implicated in familial episodic pain syndrome 1.

NR:

description
PREDICTED: transient receptor potential cation channel subfamily A member 1

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0050968 detection of chemical stimulus involved in sensory perception of pain biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015276 ligand-gated ion channel activity molecular_function

KEGG:

id description
K04984 TRPA1, ANKTM1; transient receptor potential cation channel subfamily A member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934674.1 False 4172 mRNA 0.49 28 4491768 4568591
XM_036934675.1 True 4477 mRNA 0.48 28 4495298 4568591

Neighbor

gene id symbol gene type direction distance location
LOC118937460 NA coding upstream 374365 4109412 ~ 4117403 (+)
LOC110536525 rpl7 coding upstream 467392 4018192 ~ 4024376 (+)
LOC118937480 NA coding upstream 468076 4023597 ~ 4023692 (+)
LOC118937479 NA coding upstream 470436 4021240 ~ 4021332 (+)
LOC118937478 NA coding upstream 471193 4020480 ~ 4020575 (+)
LOC118937435 msc coding downstream 15025 4583616 ~ 4586582 (+)
eya1 LOC106590661 coding downstream 251154 4819745 ~ 4956185 (+)
LOC118937293 NA coding downstream 390453 4959044 ~ 4963664 (+)
LOC100136147 tram1 coding downstream 600296 5168887 ~ 5184807 (+)
LOC110536532 LOC106579720 coding downstream 624590 5193181 ~ 5518848 (+)
G936664 NA non-coding upstream 13307 4478190 ~ 4478461 (+)
G936645 NA non-coding upstream 39807 4451743 ~ 4451961 (+)
G936644 NA non-coding upstream 42186 4449296 ~ 4449582 (+)
G936643 NA non-coding upstream 42992 4448247 ~ 4448776 (+)
G936636 NA non-coding upstream 46738 4444809 ~ 4445030 (+)
G936703 NA non-coding downstream 7583 4576174 ~ 4576970 (+)
G936786 NA non-coding downstream 80252 4648843 ~ 4649049 (+)
G936787 NA non-coding downstream 81577 4650168 ~ 4650382 (+)
G936795 NA non-coding downstream 96043 4664634 ~ 4665777 (+)
G936805 NA non-coding downstream 126905 4695496 ~ 4696588 (+)
G935977 NA other upstream 509570 3981851 ~ 3982198 (+)
G935976 NA other upstream 510617 3980771 ~ 3981151 (+)
G935846 NA other upstream 941281 3550039 ~ 3550487 (+)
G934640 NA other upstream 2582688 1908660 ~ 1909080 (+)
G934579 NA other upstream 2664402 1826627 ~ 1827366 (+)
G937051 NA other downstream 451314 5019905 ~ 5028145 (+)
G937096 xkr9 other downstream 574726 5143317 ~ 5144565 (+)
G937237 NA other downstream 936113 5504704 ~ 5505329 (+)
G937889 NA other downstream 1552993 6121584 ~ 6122269 (+)
G938723 NA other downstream 2450560 7019151 ~ 7021424 (+)

Expression


Co-expression Network