LOC110535186 (LOC106579708)


Basic Information

Item Value
gene id LOC110535186
gene name LOC106579708
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 6127375 ~ 6139717 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620046.2
CGGTCATATTTCCATGTTACACGACTTGTTTACTGAAAACAGGGTGGACTATCTGTGCTAATTAGCTGTCGGCGTCTCTGAACACCTGTATGTAAACGGAAGACAAAAGCCACACATTTATCACGGAAAATACTGTTGGCTGCAACTGTGTTAGAACAGGTTAAaacagtgtacaaAGGAAGCAAACAGCCACAGTCGATGGAGAACGATCAACACAACCAGCGGCAGGTCAATCACCCAAGGCCCTTCTTCTATGTTCAGCCGGCTTCTCAACCTTACTACAACATGTATCAGCATCATAATCAGTGGCAAAATATGAGCAACCCATATAACCACTATACCTTACCTGGTTCAGGAAGTTATCCTTTTGGACGTCCTAGTTCATACATGTCCCCATACCCATACATGCAGTATCCTGGTCAGTACATTGTTCCACACATGCATCCAGTTGATTACAGATGCATGTACGACCCACCTCGTTTCCACCCACCTCCGATGCATGACCCCATGTTCCGccaccagcaacaacaacaacaacaacaacaacaacaacactacagtGCTCAGGCCCAGAGAGAGGTGGCCTGCTCGGAGGCTCAGACCCAGTCCAGTGATGCTCTGAACAAGCTCCAGACCAACGAGAAGCAAGGCTCTGAGAAAGAACTTGATTCCGGAGTTGTTTCCCAAGCTTCTGGAATCTTCTCGTCAGAGAATAAGGAAGGGAAACGCGAGGTGGGGGGAGACATGCACAGTAGTCATGGAGCCTCGTATGGTAAGTTGGAAAGCAGCCGTTTGCAATCGTCGTCTCCACTGGCCAGGTTGTTCAGCGTCAGTGACTCCACAGCGGCGGTCTACGACGGCGATTCGAGTCGGAGCCTCGGAGACCTGGGGCTTCAGGAGGGCTGGGCTGTAGACTCTGACGAGGAGCTCCCATTGGACAGCTCATCTGTTCAGGAAGAGGATATCCAGGACACGCGGCATCACGCAGAGGATGAGTCTCTTCATAGCTGTTCTTCTGAGAATCTTTGCCTCCTGTCCGCCGTCTCGCAGTCCGACGACAGCCCCAGACCCGAAGACCCAGACAACCAGGCAGAGGAGGGGAGCGCCAATCCAGACACTGGTACTAGTTCCACTGAGGCACTTCTGAGGCCTCGGAGTCACTGCTCCAACCTGCTCTCCCCCCAGTCACGACCACCATCACCCTTAGCCTCTGACTGGCAACCCTTAGAGCAACATGGAGGAGAAACGTTTGATGTTCCAGATGGGAGTCTGTGTGAACTGGACGTTGACCTGTCCTACCAGATCCTCTGTCTGCCCTTTGACAAGGTGTTTACAGCAAGCGCTCTGCAGAAGGACGTCTCTACCAGCTCCAGCGTTGCTCTGCTGTGTGAAGACCTCCAGGCCTCTCTGTCGTCTTCTCTCGCTACTTCCTCCACCACCCCAGTccgtcaccaccaccactactactgccagCCACAGACGGCTCACGAGAGGCTCAGTGTCCTGTGTTCATCCCTGGACGAGCTCTCGTCCCGGGACGAGATGTTCTCCACCGATCTGGAGGACGTGGACGTGTTTCCCGGATGTTCAGTCTACGCGAGGGGGAGGTTCTCTGACGACCTCAGAGAGGCAGAGGTCAAGGAAGTCTGTCCCCAGTCCAAGAAGCTCATGTGCGTCTGTTGTGGCTCGAGCCTGCTGAAAGGAGGAGGGGTGAGCAGCAGGGTTAAAGTTCATCACAGCCCCAGGGTGTACGCCGCCGGGGACTCTGACGGGGTGGTCGAGCAGGAACAACGAGGATGTGTAAGGACTTGTGAGAGAGCGCACCCCAGTAGGGTGGTCGTGAAGAAGCACCCTGTCCACAAGAAACACCAGCCTCTCCCTCTACACATCCGACATGCTCCCAAGCACAGCTGTAAGAGAGGCCAGTGGAGAGAGGCTATTGGGCCCGAGGAGCAGGAACCAGAGACCGTGTTGGTGGGATCAGAGCTGAAGTATTATGAAGGCCatgtggtggagggggagagtggaCACGGAACTGGGGATAAGCAACACGGGACATATGGACTGTGCCGAGATGGCGTTAATACTTCAGATCCGGGCACATGGGAGAGTGGAGGTGCCAAGCCTAGACAGAAACCACACAGCTCACTGCCTCGACCAGAGAGACCAGCACTGAGGAAAGCTCTGTGTAAGCCGCTGGTATACCAGAGAGTCAGAGATGAGGAAAATGACGACGAGgtTCCACCAGGAGAGGAAACACAAGGGTTTGATATCACATCCTTGATGAAATCAAAGAAAATGTCACAAACAAAGAGCACTTAGTAAAATGCATAACCGAAAATGTTTCGGATGGACACCATTTTGTTTTTGTGATAAATAAAACCAAGGAGATAAAGCACTTCCAGGAGGTCCATAGACACTGTCAGTTGGCtagcactgtactgtatgttggtaaaAATGTCCCCTCGGTCAGCACAGGGTTTGGTGGCTTTGAAAATCAGATTTGAACTGTTGTGACCAGTGGATTATAAAAATTTATTTCATAACACACACTAGT
>XM_036934710.1
AGACCAGGGGTTGATGGTCCTTAAGCATGTAGAAGGTCAAGATAGGAGACGTGTAACATGGTGTTGGGATTTTAATGCTCATAGTATGCTCTCTGGGGAGAGGGTTATGGACTGAGGTAAATGGaAGGAAGCAAACAGCCACAGTCGATGGAGAACGATCAACACAACCAGCGGCAGGTCAATCACCCAAGGCCCTTCTTCTATGTTCAGCCGGCTTCTCAACCTTACTACAACATGTATCAGCATCATAATCAGTGGCAAAATATGAGCAACCCATATAACCACTATACCTTACCTGGTTCAGGAAGTTATCCTTTTGGACGTCCTAGTTCATACATGTCCCCATACCCATACATGCAGTATCCTGGTCAGTACATTGTTCCACACATGCATCCAGTTGATTACAGATGCATGTACGACCCACCTCGTTTCCACCCACCTCCGATGCATGACCCCATGTTCCGccaccagcaacaacaacaacaacaacaacaacaacaacactacagtGCTCAGGCCCAGAGAGAGGTGGCCTGCTCGGAGGCTCAGACCCAGTCCAGTGATGCTCTGAACAAGCTCCAGACCAACGAGAAGCAAGGCTCTGAGAAAGAACTTGATTCCGGAGTTGTTTCCCAAGCTTCTGGAATCTTCTCGTCAGAGAATAAGGAAGGGAAACGCGAGGTGGGGGGAGACATGCACAGTAGTCATGGAGCCTCGTATGGTAAGTTGGAAAGCAGCCGTTTGCAATCGTCGTCTCCACTGGCCAGGTTGTTCAGCGTCAGTGACTCCACAGCGGCGGTCTACGACGGCGATTCGAGTCGGAGCCTCGGAGACCTGGGGCTTCAGGAGGGCTGGGCTGTAGACTCTGACGAGGAGCTCCCATTGGACAGCTCATCTGTTCAGGAAGAGGATATCCAGGACACGCGGCATCACGCAGAGGATGAGTCTCTTCATAGCTGTTCTTCTGAGAATCTTTGCCTCCTGTCCGCCGTCTCGCAGTCCGACGACAGCCCCAGACCCGAAGACCCAGACAACCAGGCAGAGGAGGGGAGCGCCAATCCAGACACTGGTACTAGTTCCACTGAGGCACTTCTGAGGCCTCGGAGTCACTGCTCCAACCTGCTCTCCCCCCAGTCACGACCACCATCACCCTTAGCCTCTGACTGGCAACCCTTAGAGCAACATGGAGGAGAAACGTTTGATGTTCCAGATGGGAGTCTGTGTGAACTGGACGTTGACCTGTCCTACCAGATCCTCTGTCTGCCCTTTGACAAGGTGTTTACAGCAAGCGCTCTGCAGAAGGACGTCTCTACCAGCTCCAGCGTTGCTCTGCTGTGTGAAGACCTCCAGGCCTCTCTGTCGTCTTCTCTCGCTACTTCCTCCACCACCCCAGTccgtcaccaccaccactactactgccagCCACAGACGGCTCACGAGAGGCTCAGTGTCCTGTGTTCATCCCTGGACGAGCTCTCGTCCCGGGACGAGATGTTCTCCACCGATCTGGAGGACGTGGACGTGTTTCCCGGATGTTCAGTCTACGCGAGGGGGAGGTTCTCTGACGACCTCAGAGAGGCAGAGGTCAAGGAAGTCTGTCCCCAGTCCAAGAAGCTCATGTGCGTCTGTTGTGGCTCGAGCCTGCTGAAAGGAGGAGGGGTGAGCAGCAGGGTTAAAGTTCATCACAGCCCCAGGGTGTACGCCGCCGGGGACTCTGACGGGGTGGTCGAGCAGGAACAACGAGGATGTGTAAGGACTTGTGAGAGAGCGCACCCCAGTAGGGTGGTCGTGAAGAAGCACCCTGTCCACAAGAAACACCAGCCTCTCCCTCTACACATCCGACATGCTCCCAAGCACAGCTGTAAGAGAGGCCAGTGGAGAGAGGCTATTGGGCCCGAGGAGCAGGAACCAGAGACCGTGTTGGTGGGATCAGAGCTGAAGTATTATGAAGGCCatgtggtggagggggagagtggaCACGGAACTGGGGATAAGCAACACGGGACATATGGACTGTGCCGAGATGGCGTTAATACTTCAGATCCGGGCACATGGGAGAGTGGAGGTGCCAAGCCTAGACAGAAACCACACAGCTCACTGCCTCGACCAGAGAGACCAGCACTGAGGAAAGCTCTGTGTAAGCCGCTGGTATACCAGAGAGTCAGAGATGAGGAAAATGACGACGAGgtTCCACCAGGAGAGGAAACACAAGGGTTTGATATCACATCCTTGATGAAATCAAAGAAAATGTCACAAACAAAGAGCACTTAGTAAAATGCATAACCGAAAATGTTTCGGATGGACACCATTTTGTTTTTGTGATAAATAAAACCAAGGAGATAAAGCACTTCCAGGAGGTCCATAGACACTGTCAGTTGGCtagcactgtactgtatgttggtaaaAATGTCCCCTCGGTCAGCACAGGGTTTGGTGGCTTTGAAAATCAGATTTGAACTGTTGTGACCAGTGGATTATAAAAATTTATTTCATAACACACACTAGT
>XM_036934711.1
GACCAGGGGTTGATGGTCCTTAAGCATGTAGAAGGTCAAGATAGGAGACGTGTAACATGGTGTTGGGATTTTAATGCTCATAGTATGCTCTCTGGGGAGAGGGTTATGGACTGAGGTAAATGGaAGGAAGCAAACAGCCACAGTCGATGGAGAACGATCAACACAACCAGCGGCAGGTCAATCACCCAAGGCCCTTCTTCTATGTTCAGCCGGCTTCTCAACCTTACTACAACATGTATCAGCATCATAATCAGTGGCAAAATATGAGCAACCCATATAACCACTATACCTTACCTGGTTCAGGAAGTTATCCTTTTGGACGTCCTAGTTCATACATGTCCCCATACCCATACATGCAGTATCCTGGTCAGTACATTGTTCCACACATGCATCCAGTTGATTACAGATGCATGTACGACCCACCTCGTTTCCACCCACCTCCGATGCATGACCCCATGTTCCGccaccagcaacaacaacaacaacaacaacaacaacaacactacagtGCTCAGGCCCAGAGAGAGGTGGCCTGCTCGGAGGCTCAGACCCAGTCCAGTGATGCTCTGAACAAGCTCCAGACCAACGAGAAGCAAGGCTCTGAGAAAGAACTTGATTCCGGAGTTGTTTCCCAAGCTTCTGGAATCTTCTCGTCAGAGAATAAGGAAGGGAAACGCGAGGTGGGGGGAGACATGCACAGTAGTCATGGAGCCTCGTATGGTAAGTTGGAAAGCAGCCGTTTGCAATCGTCGTCTCCACTGGCCAGGTTGTTCAGCGTCAGTGACTCCACAGCGGCGGTCTACGACGGCGATTCGAGTCGGAGCCTCGGAGACCTGGGGCTTCAGGAGGGCTGGGCTGTAGACTCTGACGAGGAGCTCCCATTGGACAGCTCATCTGTTCAGGAAGAGGATATCCAGGACACGCGGCATCACGCAGAGGATGAGTCTCTTCATAGCTGTTCTTCTGAGAATCTTTGCCTCCTGTCCGCCGTCTCGCAGTCCGACGACAGCCCCAGACCCGAAGACCCAGACAACCAGGCAGAGGAGGGGAGCGCCAATCCAGACACTGGTACTAGTTCCACTGAGGCACTTCTGAGGCCTCGGAGTCACTGCTCCAACCTGCTCTCCCCCCAGTCACGACCACCATCACCCTTAGCCTCTGACTGGCAACCCTTAGAGCAACATGGAGGAGAAACGTTTGATGTTCCAGATGGGAGTCTGTGTGAACTGGACGTTGACCTGTCCTACCAGATCCTCTGTCTGCCCTTTGACAAGGTGTTTACAGCAAGCGCTCTGCAGAAGGACGTCTCTACCAGCTCCAGCGTTGCTCTGCTGTGTGAAGACCTCCAGGCCTCTCTGTCGTCTTCTCTCGCTACTTCCTCCACCACCCCAGTccgtcaccaccaccactactactgccagCCACAGACGGCTCACGAGAGGCTCAGTGTCCTGTGTTCATCCCTGGACGAGCTCTCGTCCCGGGACGAGATGTTCTCCACCGATCTGGAGGACGTGGACGTGTTTCCCGGATGTTCAGTCTACGCGAGGGGGAGGTTCTCTGACGACCTCAGAGAGGCAGAGGTCAAGGAAGTCTGTCCCCAGTCCAAGAAGCTCATGTGCGTCTGTTGTGGCTCGAGCCTGCTGAAAGGAGGAGGGGTGAGCAGCAGGGTTAAAGTTCATCACAGCCCCAGGGTGTACGCCGCCGGGGACTCTGACGGGGTGGTCGAGCAGGAACAACGAGGATGTGTAAGGACTTGTGAGAGAGCGCACCCCAGTAGGGTGGTCGTGAAGAAGCACCCTGTCCACAAGAAACACCAGCCTCTCCCTCTACACATCCGACATGCTCCCAAGCACAGCTGTAAGAGAGGCCAGTGGAGAGAGGCTATTGGGCCCGAGGAGCAGGAACCAGAGACCGTGTTGGTGGGATCAGAGCTGAAGTATTATGAAGGCCatgtggtggagggggagagtggaCACGGAACTGGGGATAAGCAACACGGGACATATGGACTGTGCCGAGATGGCGTTAATACTTCAGATCCGGGCACATGGGAGAGTGGAGGTGCCAAGCCTAGACAGAAACCACACAGCTCACTGCCTCGACCAGAGAGACCAGCACTGAGGAAAGCTCTGTGTAAGCCGCTGGTATACCAGAGAGTCAGAGATGAGGAAAATGACGACGAGGTGCCACAACGATTTCAGAGGAGAAGgtTCCACCAGGAGAGGAAACACAAGGGTTTGATATCACATCCTTGATGAAATCAAAGAAAATGTCACAAACAAAGAGCACTTAGTAAAATGCATAACCGAAAATGTTTCGGATGGACACCATTTTGTTTTTGTGATAAATAAAACCAAGGAGATAAAGCACTTCCAGGAGGTCCATAGACACTGTCAGTTGGCtagcactgtactgtatgttggtaaaAATGTCCCCTCGGTCAGCACAGGGTTTGGTGGCTTTGAAAATCAGATTTGAACTGTTGTGACCAGTGGATTATAAAAATTTATTTCA
>XM_036934712.1
GACCAGGGGTTGATGGTCCTTAAGCATGTAGAAGGTCAAGATAGGAGACGTGTAACATGGTGTTGGGATTTTAATGCTCATAGTATGCTCTCTGGGGAGAGGGTTATGGACTGAGGTAAATGGaAGGAAGCAAACAGCCACAGTCGATGGAGAACGATCAACACAACCAGCGGCAGGTCAATCACCCAAGGCCCTTCTTCTATGTTCAGCCGGCTTCTCAACCTTACTACAACATGTATCAGCATCATAATCAGTGGCAAAATATGAGCAACCCATATAACCACTATACCTTACCTGGTTCAGGAAGTTATCCTTTTGGACGTCCTAGTTCATACATGTCCCCATACCCATACATGCAGTATCCTGGTCAGTACATTGTTCCACACATGCATCCAGTTGATTACAGATGCATGTACGACCCACCTCGTTTCCACCCACCTCCGATGCATGACCCCATGTTCCGccaccagcaacaacaacaacaacaacaacaacaacaacactacagtGCTCAGGCCCAGAGAGAGGTGGCCTGCTCGGAGGCTCAGACCCAGTCCAGTGATGCTCTGAACAAGCTCCAGACCAACGAGAAGCAAGGCTCTGAGAAAGAACTTGATTCCGGAGTTGTTTCCCAAGCTTCTGGAATCTTCTCGTCAGAGAATAAGGAAGGGAAACGCGAGGTGGGGGGAGACATGCACAGTAGTCATGGAGCCTCGTATGCGGCGGTCTACGACGGCGATTCGAGTCGGAGCCTCGGAGACCTGGGGCTTCAGGAGGGCTGGGCTGTAGACTCTGACGAGGAGCTCCCATTGGACAGCTCATCTGTTCAGGAAGAGGATATCCAGGACACGCGGCATCACGCAGAGGATGAGTCTCTTCATAGCTGTTCTTCTGAGAATCTTTGCCTCCTGTCCGCCGTCTCGCAGTCCGACGACAGCCCCAGACCCGAAGACCCAGACAACCAGGCAGAGGAGGGGAGCGCCAATCCAGACACTGGTACTAGTTCCACTGAGGCACTTCTGAGGCCTCGGAGTCACTGCTCCAACCTGCTCTCCCCCCAGTCACGACCACCATCACCCTTAGCCTCTGACTGGCAACCCTTAGAGCAACATGGAGGAGAAACGTTTGATGTTCCAGATGGGAGTCTGTGTGAACTGGACGTTGACCTGTCCTACCAGATCCTCTGTCTGCCCTTTGACAAGGTGTTTACAGCAAGCGCTCTGCAGAAGGACGTCTCTACCAGCTCCAGCGTTGCTCTGCTGTGTGAAGACCTCCAGGCCTCTCTGTCGTCTTCTCTCGCTACTTCCTCCACCACCCCAGTccgtcaccaccaccactactactgccagCCACAGACGGCTCACGAGAGGCTCAGTGTCCTGTGTTCATCCCTGGACGAGCTCTCGTCCCGGGACGAGATGTTCTCCACCGATCTGGAGGACGTGGACGTGTTTCCCGGATGTTCAGTCTACGCGAGGGGGAGGTTCTCTGACGACCTCAGAGAGGCAGAGGTCAAGGAAGTCTGTCCCCAGTCCAAGAAGCTCATGTGCGTCTGTTGTGGCTCGAGCCTGCTGAAAGGAGGAGGGGTGAGCAGCAGGGTTAAAGTTCATCACAGCCCCAGGGTGTACGCCGCCGGGGACTCTGACGGGGTGGTCGAGCAGGAACAACGAGGATGTGTAAGGACTTGTGAGAGAGCGCACCCCAGTAGGGTGGTCGTGAAGAAGCACCCTGTCCACAAGAAACACCAGCCTCTCCCTCTACACATCCGACATGCTCCCAAGCACAGCTGTAAGAGAGGCCAGTGGAGAGAGGCTATTGGGCCCGAGGAGCAGGAACCAGAGACCGTGTTGGTGGGATCAGAGCTGAAGTATTATGAAGGCCatgtggtggagggggagagtggaCACGGAACTGGGGATAAGCAACACGGGACATATGGACTGTGCCGAGATGGCGTTAATACTTCAGATCCGGGCACATGGGAGAGTGGAGGTGCCAAGCCTAGACAGAAACCACACAGCTCACTGCCTCGACCAGAGAGACCAGCACTGAGGAAAGCTCTGTGTAAGCCGCTGGTATACCAGAGAGTCAGAGATGAGGAAAATGACGACGAGgtTCCACCAGGAGAGGAAACACAAGGGTTTGATATCACATCCTTGATGAAATCAAAGAAAATGTCACAAACAAAGAGCACTTAGTAAAATGCATAACCGAAAATGTTTCGGATGGACACCATTTTGTTTTTGTGATAAATAAAACCAAGGAGATAAAGCACTTCCAGGAGGTCCATAGACACTGTCAGTTGGCtagcactgtactgtatgttggtaaaAATGTCCCCTCGGTCAGCACAGGGTTTGGTGGCTTTGAAAATCAGATTTGAACTGTTGTGACCAGTGGATTATAAAAATTTATTTCATAACACACACTAGT

Function

NR:

description
uncharacterized protein LOC110535186 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620046.2 False 2557 mRNA 0.52 8 6127375 6139717
XM_036934710.1 False 2506 mRNA 0.52 8 6128262 6139717
XM_036934711.1 False 2517 mRNA 0.53 8 6128263 6139703
XM_036934712.1 True 2433 mRNA 0.52 9 6128263 6139717

Neighbor

gene id symbol gene type direction distance location
LOC110536599 LOC106579705 coding upstream 28977 6041842 ~ 6098398 (+)
LOC110535189 LOC106579706 coding upstream 89053 6028660 ~ 6038322 (+)
LOC110535182 prdm14 coding upstream 688016 5432326 ~ 5439359 (+)
LOC110536532 LOC106579720 coding upstream 697929 5193181 ~ 5518848 (+)
LOC100136147 tram1 coding upstream 942568 5168887 ~ 5184807 (+)
LOC110535188 LOC106579710 coding downstream 1998 6141715 ~ 6148083 (+)
LOC110535195 LOC106579699 coding downstream 113265 6252982 ~ 6498275 (+)
LOC110535194 LOC106579701 coding downstream 157988 6297705 ~ 6320962 (+)
LOC110536537 LOC106579698 coding downstream 206290 6346007 ~ 6353351 (+)
LOC110536538 LOC106579687 coding downstream 239727 6379444 ~ 6480492 (+)
G937889 NA non-coding upstream 5106 6121584 ~ 6122269 (+)
G937888 NA non-coding upstream 5841 6121004 ~ 6121534 (+)
G937849 NA non-coding upstream 14073 6109783 ~ 6113302 (+)
G937877 NA non-coding upstream 38648 6086737 ~ 6088727 (+)
G937851 NA non-coding downstream 8710 6148427 ~ 6148791 (+)
G937899 NA non-coding downstream 27387 6167104 ~ 6167691 (+)
G937923 NA non-coding downstream 81565 6221282 ~ 6222049 (+)
G937925 NA non-coding downstream 85062 6224779 ~ 6225211 (+)
G937930 NA non-coding downstream 95521 6235238 ~ 6236139 (+)
G937237 NA other upstream 622046 5504704 ~ 5505329 (+)
G937096 xkr9 other upstream 982810 5143317 ~ 5144565 (+)
G937051 NA other upstream 1099230 5019905 ~ 5028145 (+)
G935977 NA other upstream 2145177 3981851 ~ 3982198 (+)
G938723 NA other downstream 879434 7019151 ~ 7021424 (+)
G939408 NA other downstream 1434635 7574352 ~ 7574909 (+)
G939544 NA other downstream 1680803 7820520 ~ 7823317 (+)
G939690 NA other downstream 2000549 8140266 ~ 8140583 (+)
LOC110535212 LOC106579665 other downstream 2056651 8195607 ~ 8379328 (+)

Expression


Co-expression Network