LOC110535188 (LOC106579710)


Basic Information

Item Value
gene id LOC110535188
gene name LOC106579710
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 6141715 ~ 6148083 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934735.1
CCATGACGTCAACGAACGTCAATTTGCGCTCCTCCGCTGCCGGCGTCACGTTTTTTTAACCTGTTCCAGGGGATGTGTCTGGAGGAGCATGGCGTTACCGTGGAGGCACTGTTGGAGGTGGGCTACAGGCTCTACCCGTACGAATTTACTAGAAACCATATGCTCTTTTAATGGAAGTTCTGCTACCTCGTTGCTCCGAGGAACTGGAACCGCGACTGGCTCGGGAAATGAGGGGCTGTCCTCAAGGACTGTACACGCAACCTCACTAGGCAACTCTATTCTGACAAGGCACAAATCAAAGTTGCTTTACCCTACACCGAAGCCTTGTTACTGCAAGAGGATACACAGCGATGCCAAGTTGAAGGACCCCTTCACTCTAGCCCAAAAAGACTTGAATCATTTGTACGACGATATCAAGAAGGAACTTTTTGTGTCCAAATCAGAGCTGAAGTCCATATGTGACTACTATTTTGACGGGAAGGGCAAGGCTTTCCGACCCATGATAGTGGTGCTAATGGCCCGGGCCTGCAACAGTCACAGCAACCGAGACGGagATCTGCTCCCAGGTCAGCGATCCATAGCTATGATCTCGGAGATGATCCACACTGCCAGCCTGGTCCACGACGACGTCATCGACGGCTCGGACAAGCGCAGGGGGAAGACCACTATCAACGAAGTGTGGGGCGAGAGAAAGGCCATTTTAGCTGGAGACTTCATCCTCTCGGCAGCCTCCATGGCTCTGGCCCGTATCGGGAACAACACAGTGGTGTCAGTCCTGTCTCAGGTCACGGAGGATCTGGTGCGAGGTGAATTCATGCAGCTGGGCTCCAAAGAGAACGAGAAGGAGAGATTCAAACACTACCTCGACAAGACGTTTAAGAAGACGGCCAGTCTCATCGCCAACAGTTGTAAAGCTGTATCCATTCTAGTGAACTCCGATCCAGAGGTTCATGAAATAGCCTTTCAGTATGGGAGGAACGTTGGCATCGCCTTCCAGctgGTGGATGATGTGCTTGACTTCACAGCGTGTGCCAGCCAACTAGGAAAGCCTTCAGCTACAGACCTCAAGCTGGGTCTGGCCACCGGCCCCGTCCTGTTTGCCTgccaacagTTTCCTGAGCTGCATGGTATGATCATGAGGCGGTTCAGCTCCAGTGGAGATGTCGCTCGTGCCTGGCAGTATGTCCAGGAGAGTGAGGGTGTGGATCAGACCAACTACCTGGCCCAGCACTACTGCCAAGAGGCGATCCGGCAGATCAGCTTGCTCAGGCCCTCTCTGGAGCGGGACGCCCTTATCAGGCTCACCCAGATGGTCCTTACCCGTGACAAGTGAGACCCCACTCGTCACTTCAGGCAGCTACTTGTACCTGTGAAAGGCCACCTCATTGGGAGATGTTGATGGGTGGTTTCATCAGTGATATTCACAGTGGGTCCTGATGGAGCACTGTTTATGCAGTTTTTTTTGTGTTAACTAAGATAAAGGTGGAACTAAACTGTGCATACACAGGTTCTTCAGGACTGAGTTCTGAGATGCACAGCTTCACATTACCTATGTCTTCTTCCTTTCCTCTGGGGATAACACTGAAGGGGTCACAGAACAAAGAATGTTATTGACGTCGGGGGGTTTTCAATGCCGGTCCtgcaggaacccccccccccctccccggttTCTGAATCAACCCCCATCTTTTCTTCAAAGCGATTTAAAATGGCATGTCAGTGAGGATTTGACACAGAGCATCCAAGATcattgttaaaaaaataaatgtaaaaaaatcacTGAATTATTTAATATTCACTGTGTACTGTAACTGCAACGCCCCCCCACCACGTTGAACTGGCAGATTGTATTTGGTCATCAACGGCAGTTGACATTGCTCTCAAGGTTTGGGACGGCATGGCCACTGCAGAATCATTTTAATTCCACGATGAGACCGAAGATGTAGTATCATTGTGATATAGGTTGTGTGTGTGAAGACATTGCTCGAAGAGCCGTCCGTACCGCACAAATGCCAAACTTTTGTCCTGGTGACTCGTACCAATTTAGAGATGCTTCCTGTAATCGAGGCCTTAACATCCACAATCACTGTACTCAAATTAAAAcacgtttattta

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K12504 PDSS1; decaprenyl-diphosphate synthase subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934735.1 True 2115 mRNA 0.50 11 6141715 6148083

Neighbor

gene id symbol gene type direction distance location
LOC110535186 LOC106579708 coding upstream 1998 6127375 ~ 6139717 (+)
LOC110536599 LOC106579705 coding upstream 43317 6041842 ~ 6098398 (+)
LOC110535189 LOC106579706 coding upstream 103393 6028660 ~ 6038322 (+)
LOC110535182 prdm14 coding upstream 702356 5432326 ~ 5439359 (+)
LOC110536532 LOC106579720 coding upstream 712269 5193181 ~ 5518848 (+)
LOC110535195 LOC106579699 coding downstream 104899 6252982 ~ 6498275 (+)
LOC110535194 LOC106579701 coding downstream 149622 6297705 ~ 6320962 (+)
LOC110536537 LOC106579698 coding downstream 197924 6346007 ~ 6353351 (+)
LOC110536538 LOC106579687 coding downstream 231361 6379444 ~ 6480492 (+)
LOC110536540 NA coding downstream 511345 6659428 ~ 6675322 (+)
G937892 NA non-coding upstream 7690 6133449 ~ 6134025 (+)
G937889 NA non-coding upstream 19446 6121584 ~ 6122269 (+)
G937888 NA non-coding upstream 20181 6121004 ~ 6121534 (+)
G937849 NA non-coding upstream 28413 6109783 ~ 6113302 (+)
G937851 NA non-coding downstream 344 6148427 ~ 6148791 (+)
G937899 NA non-coding downstream 19021 6167104 ~ 6167691 (+)
G937923 NA non-coding downstream 73199 6221282 ~ 6222049 (+)
G937925 NA non-coding downstream 76696 6224779 ~ 6225211 (+)
G937930 NA non-coding downstream 87155 6235238 ~ 6236139 (+)
G937237 NA other upstream 636386 5504704 ~ 5505329 (+)
G937096 xkr9 other upstream 997150 5143317 ~ 5144565 (+)
G937051 NA other upstream 1113570 5019905 ~ 5028145 (+)
G935977 NA other upstream 2159517 3981851 ~ 3982198 (+)
G938723 NA other downstream 871068 7019151 ~ 7021424 (+)
G939408 NA other downstream 1426269 7574352 ~ 7574909 (+)
G939544 NA other downstream 1672437 7820520 ~ 7823317 (+)
G939690 NA other downstream 1992183 8140266 ~ 8140583 (+)
LOC110535212 LOC106579665 other downstream 2048285 8195607 ~ 8379328 (+)

Expression


Co-expression Network