LOC110535194 (LOC106579701)


Basic Information

Item Value
gene id LOC110535194
gene name LOC106579701
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 6297705 ~ 6320962 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934738.1
CCTATTCCAGGCATCAACATTAACGCATATTTTGTAAAAAGTAAAATCAACTCGTTTACAAATGTTTGACAACTACGTGGTAAACCAaattatttgtttaaaaaaacaacaacaacaaaagaacaCAAATTGGAGAAGTAACTAGAGAAGTGTAGCGAAGAAAAATAATCGTGTTCAAACCGGTAGTAATTTCTTCCAGAAGTCACGTTGATGTTGACCTCTCAGGAAGAAGCCATTTTCACGAAAGTAACAGTTTAGTAACAAGAGAGaaagaacaacaacaaaaggacTGTACCCAGGAGGAGTTGGTATAATCAGTAACATTGAGGGTCTGTCTTCACATACTAACCCTCAAGTTGCTGTGATAATGTTGTCCTTCTCGGCGTCGCTCCAGCCACAGGTAACGAGTCAACTCATTAGCCAACTCATCAATGCCCTCCATTCCCTGAAGAACTCAGCCAGCTCCACAGCCACAGCTTCTGTCCAGAGCCTGCAGACATACGTCACACCAGAGCAGGACCTGTTGCTCACAGAGGACCTGGGTCTATCAGAACAGAGGGTGAGTCAGCCCACCGTGAACCTCCGGGACCTGGGCTTATCAGACCTGAGGGTGGGTCAGCTGGATGAGCTGGTGAACAGGTTACTGCCCTCGCCGGGCTCAGAGGAGGGCCCAGCTGCTTCAATATGGAGGACGTCCCACGTCTCTGCGGACTCTTTCTTACAAAACAAACACGGGTTGTCAAACGGAAGGTTTGGTGTTTTTGGCTCGCCAATGTTCCACAGACCGAACCAGAGTCCTCTACACGCCATCTGTTCAGAGCTCCAATACTGGCCTGtAAGGGTCCAGAACCGAGGCTTCAAGACTCTGAGGAAGAGCAAACGCGTGGAGTCTGGTTACCAGGGGCTGGCAGAACCAGAGGGTTACACTTCAGCATTCATGAAGGGTCTCCTCATGAGACCTGACAAGTCCCCAGAGGCACAGAGTCTGGATCACGTGGTAAAGCAGAAGAACCTGCAAGGTGACCAACAAGATTCCTTCAAGTCTGGTTTCACCGAGGGCTTCATGAGGTCCCAGGCCTTCACTCAGAGGACACACGACTCGCTAAGGAGGACCAGGCTGATTCTATTGGTCCTCCTCGTTGTGGGAATCTATGGCCTGTCAAGAAGCCCGTTTCTTTCGGGTAAAGGGTCCTTTTCTGATGCTGTGAGGTTCCGCACCACGTCAGGCCTGGACTCCCAAGTGGACCCGGTTCAGGTGAAGAGCGTCACGTTTGAGCACGTTAAGGGGGTAGAGGAGGCCAAGAATGAACTGCAAGACGTGGTGGAGTTTCTCAGAAACCCCCAGAAGTTCACCGTGCTAGGAGGGAAGCTCCCTAAAGGCATCCTCCTGATTGGCCCCCCAGGCACGGGAAAGACTCTCCTGGCTCGGGCTGTAGCCGGCGAGGCCGACGTCCCCTTCTTCTACGCATCGGGATCCGAGTTTGACGAGATGTTTGTGGGTGTCGGAGCTAGCCGCATCAGAAACCTCTTCAAAGAGGCGAAAGCCAACGCACCTTGTGTTGTCTTCATTGATGAGCTTGACAGCGTGGGAGGAAAGAGGATCGAGTCTCCCATGCACCCCTACTCCAGACAGACCATCAACCAGCTACTGGCAGAGATGGACGGGTTCAAGCCAAACGAAGGGGTCATCGTTATCGGCGCTACAAACTTTGCTGAGGCTTTGGATAATGCCCTGGTACGTCCGGGGAGGTTTGACATGCAAGTGACCGTCCCTCGTCCGGACGTGAAAGGACGTACGGAGATCCTCAACTGGTACCTGCAGAAGATCAAAGTGGATCCCAACGTGAACGCGGCGATCATTGCCAGGGGGACGGTGGGCTTCACGGGGGCGGAGCTGGAGAACCTGGTGAACCAGGCAGCCCTGAAGGCAGCGGTGGACGGCCTCGACCAGGTCACCATGAAGGAACTGGAGTTCTCCAAGGACAAGATCCTCATGGGTCCTGAGCTCAGGAGTGTGGACATTGATAAGAAGAACAAGCAAATCACAGCCTACCACGAGTCAGGCCACGCCATTGTGGCCTATTACACCAAAGACGCCATGCCCATCAACAAGGCAACCATCATGCCCAGAGGACCCACTCTTGGCCACGTGTCCATGCTCCCAGAGAATGACCGTTGGAGTGAGACGCGGGCTCAGCTCCTGGCCCAGATGGACGTCAGCATGGGAGGCCGCGTGGCCGAGGAGCTCATCTTTGGCGACGATTACATCACGACTGGCGCGTCAAGCGACTTTGACGGGGCGACCAGAATAGCCAAGATGATGGTGACCAGGTTCGGAATGAGTGACAAGCTTGGTGTCATGACCTATGCTGAAGTAACCAAACAGAGCCCTGAGACGCAGGCTGCCATCGAACAGGAAGTCAGGGTCCTGCTCAAGGACTCGTATGAGCGAGCCAAAAACCTCTTGAAGACCTACAGCGATGAGCACAAGACGCTGGCCGAGGCTCTGCTAACGTACGAAACTCTGGATGCCAAAGAGATCAAGCTGGTCCTAGAGGGCAAGGCCCTGGACCCTAGATGACTCGCTGAGAGACGCCTCGTCAGAGACTGTTAGAAGTCAGGGTTGGGGGGTCATTCCATTTAAATTctagtcaattcagaaagtaaaccaaattccgaTTCAAAATGTTCCTCAATGGGAAAAGCATTGAAGATAATAGGAATTGGAATTTCAtcgtacttcctgaattgactggaattaaaatggaatgACCCCCAACCCTGTAAGACATATTATCTGAATTATGTAAATTTGAAGATGTACAATGGAGTGGCCTTTAGAGGTTTTATAGGTTTCTTCCCCCTCAACGTAAATGACTGACTAGCTCATAGTCGCACCTCGTTTTATCCCTCTGAACCTATGACTCCTCTTGTCTGAACCATTCACGTTGGGCAGGCATTCCCGTACGGCAGCTTTGTCAAGCGACAAAGGCCCCATAGCAAGGTTCACTTCAACACCCTGAGCTCAAAATGCCCTTTCAATGCCAGGATTTTAGTTTTTTGATATCGACATTGTCGTCGTTTTCCCCCTTAAAGTTTGTATATACAATATTGATCTAGAAAGTGCTGCATTATGATGCATTAACGTGCTCCTGGGAAAGTGGGAGGTTGTAAATCCGATATGTGCTTTTGAAGTCGGACCAATTCTTGAACCAATaagaagctagctaacattgctaAGAattaagttagctagcttgctaaacatTTGCCGATTATGGTCAAACTGGCTACGGTATCCACATTGATAAGTTTGTAATTGTCAAATTTATTTATTGTTAACTTTTGGTTGAAACGGGGTGGTTAAATGTCTTCGTtattaacaaacaaaaaatgcaGTTTGTAATTACGACTTGGAGAGTCGTTCAAGTGAAACTTGAAACGACAGTTTCAGAAGCATGTgaccgcccccccccccaatagtcCTCAGCCAATAGGATCTTATAGCGCACAATTGTTTTTTTCTTTAGTAATTTTGTGCATGAAAGCCTCGTTGTGTATTTAGTAACGAAGTTATGAGGGAAAACAACTGTTGGCAGATCTGATCCTACTTGACCTATAGCCTTTTCACTGAGCAGAATATTAAGTGATAGAAACGCCGACCATAAAATATGGGtttatcattaaaaaaaaacacacacatttttaacATGCACATACAATCTAAATACAAAATGGCTGTATCAGCGTTCCCTTATATGATTCATCGTCTGTGAGTTGTGAAGGAATTCATCTGCGTTCACTGTATGCAGGTCAATATACACATTTTATGttgtcattttatttatttacccaACGTGTGCCGGACTTGCCATCGTTAGCTATTTTAGGCCCTCGTGTCTGTGCCCATCCATGGTGTAAATGAAATGTGAGAGGAGATGTACTTAAATCTGTTTCTCATTGGAAGTGGATCTTGTGGAAGCTCAAATAAAAATTATTCTAAAATCA
>XM_036934739.1
CTATTCCAGGCATCAACATTAACGCATATTTTGTAAAAAGTAAAATCAACTCGTTTACAAATGTTTGACAACTACGTGGTAAACCAaattatttgtttaaaaaaacaacaacaacaaaagaacaCAAATTGGAGAAGTAACTAGAGAAGTGTAGCGAAGAAAAATAATCGTGTTCAAACCGGTAGTAATTTCTTCCAGAAGTCACGTTGATGTTGACCTCTCAGGAAGAAGCCATTTTCACGAAAGTAACAGTTTAGTAACAAGAGAGaaagaacaacaacaaaaggacTGTACCCAGGAGGAGTTGGTATAATCAGTAACATTGAGGGTCTGTCTTCACATACTAACCCTCAAGTTGCTGTGATAATGTTGTCCTTCTCGGCGTCGCTCCAGCCACAGGTAACGAGTCAACTCATTAGCCAACTCATCAATGCCCTCCATTCCCTGAAGAACTCAGCCAGCTCCACAGCCACAGCTTCTGTCCAGAGCCTGCAGACATACGTCACACCAGAGCAGGACCTGTTGCTCACAGAGGACCTGGGTCTATCAGAACAGAGGGTGAGTCAGCCCACCGTGAACCTCCGGGACCTGGGCTTATCAGACCTGAGGGTGGGTCAGCTGGATGAGCTGGTGAACAGGTTACTGCCCTCGCCGGGCTCAGAGGAGGGCCCAGCTGCTTCAATATGGAGGACGTCCCACGTCTCTGCGGACTCTTTCTTACAAAACAAACACGGGTTGTCAAACGGAAGGTTTGGTGTTTTTGGCTCGCCAATGTTCCACAGACCGAACCAGAGTCCTCTACACGCCATCTGTTCAGAGCTCCAATACTGGCCTGtAAGGGTCCAGAACCGAGGCTTCAAGACTCTGAGGAAGAGCAAACGCGTGGAGTCTGGTTACCAGGGGCTGGCAGAACCAGAGGGTTACACTTCAGCATTCATGAAGGGTCTCCTCATGAGACCTGACAAGTCCCCAGAGGCACAGAGTCTGGATCACGTGGTAAAGCAGAAGAACCTGCAAGGTGACCAACAAGATTCCTTCAAGTCTGGTTTCACCGAGGGCTTCATGAGGTCCCAGGCCTTCACTCAGAGGACACACGACTCGCTAAGGAGGACCAGGCTGATTCTATTGGTCCTCCTCGTTGTGGGAATCTATGGCCTGTCAAGAAGCCCGTTTCTTTCGGTGAGGTTCCGCACCACGTCAGGCCTGGACTCCCAAGTGGACCCGGTTCAGGTGAAGAGCGTCACGTTTGAGCACGTTAAGGGGGTAGAGGAGGCCAAGAATGAACTGCAAGACGTGGTGGAGTTTCTCAGAAACCCCCAGAAGTTCACCGTGCTAGGAGGGAAGCTCCCTAAAGGCATCCTCCTGATTGGCCCCCCAGGCACGGGAAAGACTCTCCTGGCTCGGGCTGTAGCCGGCGAGGCCGACGTCCCCTTCTTCTACGCATCGGGATCCGAGTTTGACGAGATGTTTGTGGGTGTCGGAGCTAGCCGCATCAGAAACCTCTTCAAAGAGGCGAAAGCCAACGCACCTTGTGTTGTCTTCATTGATGAGCTTGACAGCGTGGGAGGAAAGAGGATCGAGTCTCCCATGCACCCCTACTCCAGACAGACCATCAACCAGCTACTGGCAGAGATGGACGGGTTCAAGCCAAACGAAGGGGTCATCGTTATCGGCGCTACAAACTTTGCTGAGGCTTTGGATAATGCCCTGGTACGTCCGGGGAGGTTTGACATGCAAGTGACCGTCCCTCGTCCGGACGTGAAAGGACGTACGGAGATCCTCAACTGGTACCTGCAGAAGATCAAAGTGGATCCCAACGTGAACGCGGCGATCATTGCCAGGGGGACGGTGGGCTTCACGGGGGCGGAGCTGGAGAACCTGGTGAACCAGGCAGCCCTGAAGGCAGCGGTGGACGGCCTCGACCAGGTCACCATGAAGGAACTGGAGTTCTCCAAGGACAAGATCCTCATGGGTCCTGAGCTCAGGAGTGTGGACATTGATAAGAAGAACAAGCAAATCACAGCCTACCACGAGTCAGGCCACGCCATTGTGGCCTATTACACCAAAGACGCCATGCCCATCAACAAGGCAACCATCATGCCCAGAGGACCCACTCTTGGCCACGTGTCCATGCTCCCAGAGAATGACCGTTGGAGTGAGACGCGGGCTCAGCTCCTGGCCCAGATGGACGTCAGCATGGGAGGCCGCGTGGCCGAGGAGCTCATCTTTGGCGACGATTACATCACGACTGGCGCGTCAAGCGACTTTGACGGGGCGACCAGAATAGCCAAGATGATGGTGACCAGGTTCGGAATGAGTGACAAGCTTGGTGTCATGACCTATGCTGAAGTAACCAAACAGAGCCCTGAGACGCAGGCTGCCATCGAACAGGAAGTCAGGGTCCTGCTCAAGGACTCGTATGAGCGAGCCAAAAACCTCTTGAAGACCTACAGCGATGAGCACAAGACGCTGGCCGAGGCTCTGCTAACGTACGAAACTCTGGATGCCAAAGAGATCAAGCTGGTCCTAGAGGGCAAGGCCCTGGACCCTAGATGACTCGCTGAGAGACGCCTCGTCAGAGACTGTTAGAAGTCAGGGTTGGGGGGTCATTCCATTTAAATTctagtcaattcagaaagtaaaccaaattccgaTTCAAAATGTTCCTCAATGGGAAAAGCATTGAAGATAATAGGAATTGGAATTTCAtcgtacttcctgaattgactggaattaaaatggaatgACCCCCAACCCTGTAAGACATATTATCTGAATTATGTAAATTTGAAGATGTACAATGGAGTGGCCTTTAGAGGTTTTATAGGTTTCTTCCCCCTCAACGTAAATGACTGACTAGCTCATAGTCGCACCTCGTTTTATCCCTCTGAACCTATGACTCCTCTTGTCTGAACCATTCACGTTGGGCAGGCATTCCCGTACGGCAGCTTTGTCAAGCGACAAAGGCCCCATAGCAAGGTTCACTTCAACACCCTGAGCTCAAAATGCCCTTTCAATGCCAGGATTTTAGTTTTTTGATATCGACATTGTCGTCGTTTTCCCCCTTAAAGTTTGTATATACAATATTGATCTAGAAAGTGCTGCATTATGATGCATTAACGTGCTCCTGGGAAAGTGGGAGGTTGTAAATCCGATATGTGCTTTTGAAGTCGGACCAATTCTTGAACCAATaagaagctagctaacattgctaAGAattaagttagctagcttgctaaacatTTGCCGATTATGGTCAAACTGGCTACGGTATCCACATTGATAAGTTTGTAATTGTCAAATTTATTTATTGTTAACTTTTGGTTGAAACGGGGTGGTTAAATGTCTTCGTtattaacaaacaaaaaatgcaGTTTGTAATTACGACTTGGAGAGTCGTTCAAGTGAAACTTGAAACGACAGTTTCAGAAGCATGTgaccgcccccccccccaatagtcCTCAGCCAATAGGATCTTATAGCGCACAATTGTTTTTTTCTTTAGTAATTTTGTGCATGAAAGCCTCGTTGTGTATTTAGTAACGAAGTTATGAGGGAAAACAACTGTTGGCAGATCTGATCCTACTTGACCTATAGCCTTTTCACTGAGCAGAATATTAAGTGATAGAAACGCCGACCATAAAATATGGGtttatcattaaaaaaaaacacacacatttttaacATGCACATACAATCTAAATACAAAATGGCTGTATCAGCGTTCCCTTATATGATTCATCGTCTGTGAGTTGTGAAGGAATTCATCTGCGTTCACTGTATGCAGGTCAATATACACATTTTATGttgtcattttatttatttacccaACGTGTGCCGGACTTGCCATCGTTAGCTATTTTAGGCCCTCGTGTCTGTGCCCATCCATGGTGTAAATGAAATGTGAGAGGAGATGTACTTAAATCTGTTTCTCATTGGAAGTGGATCTTGTGGAAGCTCAAATAAAAATTATTCTAAAATCA

Function

NR:

description
ATP-dependent zinc metalloprotease YME1L1-like

GO: NA

KEGG:

id description
K08955 YME1; ATP-dependent metalloprotease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934738.1 False 4008 mRNA 0.48 18 6297705 6320962
XM_036934739.1 True 3983 mRNA 0.48 18 6297706 6320962

Neighbor

gene id symbol gene type direction distance location
LOC110535195 LOC106579699 coding upstream 12998 6252982 ~ 6498275 (+)
LOC110535188 LOC106579710 coding upstream 149622 6141715 ~ 6148083 (+)
LOC110535186 LOC106579708 coding upstream 157988 6127375 ~ 6139717 (+)
LOC110536599 LOC106579705 coding upstream 199307 6041842 ~ 6098398 (+)
LOC110535189 LOC106579706 coding upstream 259383 6028660 ~ 6038322 (+)
LOC110536537 LOC106579698 coding downstream 25045 6346007 ~ 6353351 (+)
LOC110536538 LOC106579687 coding downstream 58482 6379444 ~ 6480492 (+)
LOC110536540 NA coding downstream 338466 6659428 ~ 6675322 (+)
LOC110535201 LOC106579689 coding downstream 691386 7012348 ~ 7051408 (+)
LOC110535202 LOC106579690 coding downstream 1049881 7370843 ~ 7427263 (+)
G937952 LOC106579700 non-coding upstream 2552 6293727 ~ 6295153 (+)
G937948 NA non-coding upstream 7027 6290195 ~ 6290678 (+)
G937942 NA non-coding upstream 23089 6274066 ~ 6274616 (+)
G937930 NA non-coding upstream 61566 6235238 ~ 6236139 (+)
G937925 NA non-coding upstream 72494 6224779 ~ 6225211 (+)
G937951 NA non-coding downstream 108 6321070 ~ 6321981 (+)
G937966 NA non-coding downstream 20002 6340964 ~ 6341310 (+)
G937973 NA non-coding downstream 35670 6356632 ~ 6357043 (+)
G937975 NA non-coding downstream 38456 6359418 ~ 6360293 (+)
G937889 NA other upstream 175436 6121584 ~ 6122269 (+)
G937237 NA other upstream 792376 5504704 ~ 5505329 (+)
G937096 xkr9 other upstream 1153140 5143317 ~ 5144565 (+)
G937051 NA other upstream 1269560 5019905 ~ 5028145 (+)
G935977 NA other upstream 2315507 3981851 ~ 3982198 (+)
G938723 NA other downstream 698189 7019151 ~ 7021424 (+)
G939408 NA other downstream 1253390 7574352 ~ 7574909 (+)
G939544 NA other downstream 1499558 7820520 ~ 7823317 (+)
G939690 NA other downstream 1819304 8140266 ~ 8140583 (+)
LOC110535212 LOC106579665 other downstream 1875406 8195607 ~ 8379328 (+)

Expression


Co-expression Network