LOC110536537 (LOC106579698)


Basic Information

Item Value
gene id LOC110536537
gene name LOC106579698
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 6346007 ~ 6353351 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110536537
ATGACGGCGGTGCCACTCAACACACTGCAACTCAGTGTCAGTTTGTCATTTCACCAAATTCTCCTGAGTTGAGTGTCAAACTGGATCACGTTGAAAATGAGACAACGTTTAAGATACAATCACCTACAGTAACGTATGCATCAGGCAGCATATCATGCAAGCAAGGGAGGTTGGCCGAGGAACAGGACATCTCTAAAGACTCGGTTTACAAGTGATGCACATCAACTATGAGTACTGACGACTTCTACAATTACCTAAGtaacagagggtttcagtatgGTTCTGTTTTCAGAAACAGAGGAGATGTCCAATATGGTGACGACTTGATGGAAGCCATCTCTGTTGTGTCTGTCCCTGAAGAGCTCCTGCCACAGTTGCATGACTTCTGCATTCATCCTGTAGTGCTAGACTACTTGCTACAACTGACTCAAGTCACAACAGTGACTGCATTCATGGCAAGGCCTGGCTTTCCTGATGAAATTGGCCGGTGGACTGTTCCTCGAACCCTTTGCAGCCTGAAATGGTTCTGTATTTGAGAGCTGCAAATGTTGCAGTGGACAATTTGGAAGTATCTGTCTGTTTCACAGACAAAGCAGGCCGGGTGTTGGTTGAACTGAAGCATGTTATATTCAAGTATCTTGGAAGTCAATCTTGTGTAGTTGAAGAATACTTCTTCCACAATGACTTCAGTGTTGTCTCTGATGACTACAAGCCCATTAATAAACCCAAGGCATTGGTCTTCGCTGACCAGATGAGTGTATCCGTAGCCATGCAAAAACATTTGAGCTCACAGTCTCAATACGTCTCTTTCACACATGCCAATGATCTCTTGAGCCGTGGATTTAAAGCGCCGTTCGATCAAATCTCGAACAACTTTGAAGAAATCTTGTTTGTGTGGAGCAACGACAATGTTACATCCCACGAAACAGAGGCTATCCTGGAGAACATGGTCAGCTGCTGTGAGATGTTCCGACAAATAGTCCTGGAACTGAAGGTAATGAAATTTCCAAATTCCATCAGAGCAATAACCTACCGGTCAGCAGAGAACACAGTGGACTGTATCAGCCCAGGCTTTGTCATGTCAGGCATGACTAGATCTCGTGCTGAAGAAATGTCAGATATTTTTATTAGCTTGTCTGGGCAGTTCATCCTTCAGATTGCTGATCAGTACAGAATGACTAGCTTGTCTGCTGTTCCCTGTGATGTTGAGGATCAGAACATCCAGGAGAAATAAGTTGAGACTCAGCTCAGTAAGATAGGTGTTCATTTCTCAGACTACTGCTGTCCTGTCAGTGTCTCTGACCTGAACTATGGTCAGACAATGTACTGGAACAATCACATCTCAGAACCACCAGCTTCTGGCTCTTGACCTCAGTGGTACTGTCACAGCTGTAGGAAAAGATGTGAACACACTGAAAGTGGGAGACCATGTAAGTATCATGTTATCCCATTGCTGCATCTTCTAAGATTGCGATTCCTGAAGCAGCATGCTACAAAACAAAGAGGCTCACATTTCTGAAGGAGGCTCCTTGTGTGTCCTACTTTGTTCTTGCATGGGAAGTCTTGCATCATGCATTACCCAAAGTCAAACAGCGGAGGTTGGGCATCATCTCATCTGTTCCTGACTCATGTTTGACAAAGATCTTAGCCCAAACTGCAAATAAATCAGGATGGTATAAATCTTGTTAG

Function

NR:

description
uncharacterized protein LOC109909949 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110536537 True 1689 mRNA 0.44 2 6346007 6353351

Neighbor

gene id symbol gene type direction distance location
LOC110535194 LOC106579701 coding upstream 25045 6297705 ~ 6320962 (+)
LOC110535195 LOC106579699 coding upstream 61300 6252982 ~ 6498275 (+)
LOC110535188 LOC106579710 coding upstream 197924 6141715 ~ 6148083 (+)
LOC110535186 LOC106579708 coding upstream 206290 6127375 ~ 6139717 (+)
LOC110536599 LOC106579705 coding upstream 247609 6041842 ~ 6098398 (+)
LOC110536538 LOC106579687 coding downstream 26093 6379444 ~ 6480492 (+)
LOC110536540 NA coding downstream 306077 6659428 ~ 6675322 (+)
LOC110535201 LOC106579689 coding downstream 658997 7012348 ~ 7051408 (+)
LOC110535202 LOC106579690 coding downstream 1017492 7370843 ~ 7427263 (+)
LOC110535203 LOC106579691 coding downstream 1094063 7447414 ~ 7502456 (+)
G937966 NA non-coding upstream 4697 6340964 ~ 6341310 (+)
G937951 NA non-coding upstream 24026 6321070 ~ 6321981 (+)
G937955 NA non-coding upstream 35867 6307819 ~ 6310140 (+)
G937952 LOC106579700 non-coding upstream 50854 6293727 ~ 6295153 (+)
G937948 NA non-coding upstream 55329 6290195 ~ 6290678 (+)
G937973 NA non-coding downstream 3281 6356632 ~ 6357043 (+)
G937975 NA non-coding downstream 6067 6359418 ~ 6360293 (+)
G937993 NA non-coding downstream 38171 6391522 ~ 6391792 (+)
G937998 NA non-coding downstream 46064 6399415 ~ 6400670 (+)
G937889 NA other upstream 223738 6121584 ~ 6122269 (+)
G937237 NA other upstream 840678 5504704 ~ 5505329 (+)
G937096 xkr9 other upstream 1201442 5143317 ~ 5144565 (+)
G937051 NA other upstream 1317862 5019905 ~ 5028145 (+)
G935977 NA other upstream 2363809 3981851 ~ 3982198 (+)
G938723 NA other downstream 665800 7019151 ~ 7021424 (+)
G939408 NA other downstream 1221001 7574352 ~ 7574909 (+)
G939544 NA other downstream 1467169 7820520 ~ 7823317 (+)
G939690 NA other downstream 1786915 8140266 ~ 8140583 (+)
LOC110535212 LOC106579665 other downstream 1843017 8195607 ~ 8379328 (+)

Expression


Co-expression Network