LOC110535202 (LOC106579690)


Basic Information

Item Value
gene id LOC110535202
gene name LOC106579690
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 7370843 ~ 7427263 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934749.1
GCATGCGCTGCCCTATTTGGTCAAATTGCTTGTCAATCAAGAGTGCTACCACGGTGACAGAGACAAAGTATCTGACTGTAAATGTGTAATATATTATTTCATCCGTTGTTCAGACAGATGAGAGAGCGAAATCAGATTAGACAGCCCGGTTACAAACAGTCAGTTGAGTTTAAAATATTGAAGCATTGTTGCACGCTTCGACATCATTTAATTACACATGAAAGTAACAGTTTTCTCCTCTGAAATATCCATGAGGGATGCGGTCTTATTTTATCACTCCTAAAGCTGTGAAGTACTGCTACTTTTGTGATCATATTGTAGCCAACGTCTACTACTAGTCTTCCAGCCTACTAGGGAAGTTGGGGTTGCTGTCGTTGTCTGTTTTGTTTTAAAGTGACAGGAAAGACAGCACGCTGTAAAACATTCAGCCCTGATCGAATCGACGCGATGATTCCTGAATGTCCCCGGAGCCGAGAGACAAGGAGCCGAACGCGGTGCCACTATGGCCAGGTAGCCGAACCAAACCAGAACTGTTTTGGGCTACTTTCCGAGATCAAAACTCTTATCAAGAATGAACCATTCACTGACCACTACACCATCATTCCGGGCAAAGAACTTGGCAGTGCGGCCGGAGGGGAGATCTTTAACCAGTGTGTAGCGGAGAGGGACGAGGCCTTCAAAGAGGAGGACGTTAAGAGGCTGTTGAGACAGATCCTAGAGGGAGTCTCCTTCCTCCACAGCAACAACGTGGTGCACCTGGACATCAAGCCCCAAAACATTCTGTTGACCTGCGATGCTCCTCTGGGGGACATCAAGATTGTGGACTTTGGTCTGTCCAGGATGGTGAGCAGCAGTCAGGAGCTCAGAGAGATCATGGGGACCCCGGAGTATGTGGCTCCAGAAATCCTTAATTACGAACCAATTAGCACAGCAACAGACATGTGGAGTATTGGGGTGCTGACCTACGTGATGCTGACAGGTACCTCTCCCTTTCTGGGGGAGGACAAGCAGGAGACCTTCCTCAACATCTCCCAGATCAACGTCAGTTACCAGGAGGACGAGCTGGAGCATTTAGACCAGGCCGCCATCGCCTTCATCAAGCTCCTGCTCGTCAAAGAATCCCAGAACCGTGCCACGGCAGAAGAGTGCCTGCAGCACCAGTGGCTCCAGCCAAAAGAGAAAAGGGAAGCCGAGGCGACAGTAGAGGTGAAAGAGACTATAAGCCCCACCAAGTGCACCTCTGAGCCAGCCAGCCCCGAGAGCCCCatcaggggggaggaggaggaaggcccCGAAACGGAGGAACTGATCGTGATGGCGGCCTACACACTgggccagtgccgccagtcaacagACAAGGAGGTCATGACCCCCGACCAGAAGGCCATCTCCAAACGCTTCAAGTTCGAGGAGCCCTTCAGCGCCCTCCAAGAGGTTCCTGGAGAATTCATCTACTGaaggactcacacacacacacatctcatcctCTACACTAGGTGGTCCTGGAGAGCTAGTGGTGGTGTTGGGTCTCCCTTCTGCCCTTCACTGACACACCAGATAATTCAAATCGTCACGGCCCTGATTAGTTGCTTAGTAGAATCGGGTGCATTATTGATGGGTTGGAGCCAAAGCCTGCACCAACCAGTAGCTCACAAAGAACCTGGGTGGAAAAACTCCTGCTCTTACATCTAGGGAAAAGCAGTTAAAAACATTGCACTTACAAACCACAAGAAACATCTCACACTTTTCTAACCCACCTCACGGTCTGAATTCGTaaagaaaaaacagttttttttgtccCTTTTTCATAAACATCCTGACGTTTCTCTAGACTAAGCCTTGTTGTGACGTTATTCCAGACTAAGCCTTGTTGTGACGTTATTCTAGACTAAGCCTTGTGGTGACGTTATTCCAGACTAAGCCTTGTTGTGATGTTACTCCAGACTGAGCCTTGTTGTGATGTTACTCCAGACTAAGCCTTGTTGTGATATTACTCCAGACTGAGCCTTGTTGTGACGTTATTCCAGACTAAGCCTTGTGGTGACGTTATTCCAGACTAAGCCTTGTTGTGACGTTATTCCAGACTGAGCCTTGTTGTGACATTACTCCAGACTAAGCCTTGTTGTGACGTTATTCCAGACTAATCCTTGTTGTGACGTTATTCCAGACTGAGCCTTGTTGTGACGTTATTCCAGACTAAGCCTTGTTGTGACGTTATTCCAGACTAAGCCTTGTTGTGACGTTATTCCAGACTGAGCCTTGTTGTAATGTTACTCCAGACTAAGCCTTGACGCTACTCCAGACTAAGCCTTGTTGTAATGTTACTCCAGACTAAGCCTTGTTTTGAAGTTACTCTAGACTAAGCCTTGTTGTGACGTTTCTCCAGACTGAGCCTTGTTGTGACGTTACTCCAGACTGAGCCTTGTTGTGACGTTTCTCCAGACTGAGCCTTGTTATGACGTTTCTCCAGACTGAGCCTTGTTGTGACGTTTCTCCAAACTAAGCCTTGTTGTGATGCTTTATTTACTTTTTCTTTGGTGCCTTGCTGGGAGAATTAGAGATGGAATTGAATCTTTTTTGTCCATGTTTTGTCTGCCTTGTATTTTCTTTATGTTTAAGGTTATAGATATCTTCTGTACGGGGAAAGGGGGggttaattatatatatatatatacaaaacgTTATGTTGATTTAAGAGTACGTCTCGAAATAATTCTGTTGAAAAAGCCATTGCACACGTTTGACCCAGAACTGAAAACATCCCATGCATCTCATATATGCATCTCAAATAATTTACACTTGTATATGCAGAGAGCGCTTGGTTTTCTTTCCTAATTCCCAAATAATAGGCATAGTCTCCATCAAACAAGAAGCTTCTTATTATGGGATGTTCTACTGTAAATAAAGATATATCTCTTAAACCTT
>XM_036934748.1
GCTGCCCTATTTGGTCAAATTGCTTGTCAATCAAGAGTGCTACCACGGTGACAGAGACAAAGTATCTGACTGTAAATGTGTAATATATTATTTCATCCGTTGTTCAGACAGATGAGAGAGCGAAATCAGATTAGACAGCCCGGTTACAAACAGTCAGTTGAGTTTAAAATATTGAAGCATTGTTGCACGCTTCGACATCATTTAATTACACATGAAAGTAACAGTTTTCTCCTCTGAAATATCCATGAGGGATGCGGTCTTATTTTATCACTCCTAAAGCTGTGAAGTACTGCTACTTTTGTGATCATATTGTAGCCAACGTCTACTACTAGTCTTCCAGCCTACTAGGGAAGTTGGGGTTGCTGTCGTTGTCTGTTTTGTTTTAAAGTGACAGGAAAGACAGCACGCTGTAAAACATTCAGCCCTGATCGAATCGACGCGATGATTCCTGAATGTCCCCGGAGCCGAGAGACAAGGAGCCGAACGCGGTGCCACTATGGCCAGGTAGCCGAACCAAACCAGAACTGTTTTGGGCTACTTTCCGAGATCAAAACTCTTATCAAGAATGAACCATTCACTGACCACTACACCATCATTCCGGGCAAAGAACTTGGCAGGGGGAAGTTCGCCGTGGTGAGGAAGTGTGTGGAGAAGTGCACGGGGCAGGAGTACGCCGCCAAGttcatgaggaagaggaggaagggccAGGACTGCAGGCTGGAGATCATCCACGAGGTGGCCGTTCTGGAGCTCGCCACGGCCAGCCAGCGGGTGGTCAACCTGCACCAGGTCTACGAGATGGCCTCCGAGATGGTGCTCGTCCTCCAGTTTGCGGCCGGAGGGGAGATCTTTAACCAGTGTGTAGCGGAGAGGGACGAGGCCTTCAAAGAGGAGGACGTTAAGAGGCTGTTGAGACAGATCCTAGAGGGAGTCTCCTTCCTCCACAGCAACAACGTGGTGCACCTGGACATCAAGCCCCAAAACATTCTGTTGACCTGCGATGCTCCTCTGGGGGACATCAAGATTGTGGACTTTGGTCTGTCCAGGATGGTGAGCAGCAGTCAGGAGCTCAGAGAGATCATGGGGACCCCGGAGTATGTGGCTCCAGAAATCCTTAATTACGAACCAATTAGCACAGCAACAGACATGTGGAGTATTGGGGTGCTGACCTACGTGATGCTGACAGGTACCTCTCCCTTTCTGGGGGAGGACAAGCAGGAGACCTTCCTCAACATCTCCCAGATCAACGTCAGTTACCAGGAGGACGAGCTGGAGCATTTAGACCAGGCCGCCATCGCCTTCATCAAGCTCCTGCTCGTCAAAGAATCCCAGAACCGTGCCACGGCAGAAGAGTGCCTGCAGCACCAGTGGCTCCAGCCAAAAGAGAAAAGGGAAGCCGAGGCGACAGTAGAGGTGAAAGAGACTATAAGCCCCACCAAGTGCACCTCTGAGCCAGCCAGCCCCGAGAGCCCCatcaggggggaggaggaggaaggcccCGAAACGGAGGAACTGATCGTGATGGCGGCCTACACACTgggccagtgccgccagtcaacagACAAGGAGGTCATGACCCCCGACCAGAAGGCCATCTCCAAACGCTTCAAGTTCGAGGAGCCCTTCAGCGCCCTCCAAGAGGTTCCTGGAGAATTCATCTACTGaaggactcacacacacacacatctcatcctCTACACTAGGTGGTCCTGGAGAGCTAGTGGTGGTGTTGGGTCTCCCTTCTGCCCTTCACTGACACACCAGATAATTCAAATCGTCACGGCCCTGATTAGTTGCTTAGTAGAATCGGGTGCATTATTGATGGGTTGGAGCCAAAGCCTGCACCAACCAGTAGCTCACAAAGAACCTGGGTGGAAAAACTCCTGCTCTTACATCTAGGGAAAAGCAGTTAAAAACATTGCACTTACAAACCACAAGAAACATCTCACACTTTTCTAACCCACCTCACGGTCTGAATTCGTaaagaaaaaacagttttttttgtccCTTTTTCATAAACATCCTGACGTTTCTCTAGACTAAGCCTTGTTGTGACGTTATTCCAGACTAAGCCTTGTTGTGACGTTATTCTAGACTAAGCCTTGTGGTGACGTTATTCCAGACTAAGCCTTGTTGTGATGTTACTCCAGACTGAGCCTTGTTGTGATGTTACTCCAGACTAAGCCTTGTTGTGATATTACTCCAGACTGAGCCTTGTTGTGACGTTATTCCAGACTAAGCCTTGTGGTGACGTTATTCCAGACTAAGCCTTGTTGTGACGTTATTCCAGACTGAGCCTTGTTGTGACATTACTCCAGACTAAGCCTTGTTGTGACGTTATTCCAGACTAATCCTTGTTGTGACGTTATTCCAGACTGAGCCTTGTTGTGACGTTATTCCAGACTAAGCCTTGTTGTGACGTTATTCCAGACTAAGCCTTGTTGTGACGTTATTCCAGACTGAGCCTTGTTGTAATGTTACTCCAGACTAAGCCTTGACGCTACTCCAGACTAAGCCTTGTTGTAATGTTACTCCAGACTAAGCCTTGTTTTGAAGTTACTCTAGACTAAGCCTTGTTGTGACGTTTCTCCAGACTGAGCCTTGTTGTGACGTTACTCCAGACTGAGCCTTGTTGTGACGTTTCTCCAGACTGAGCCTTGTTATGACGTTTCTCCAGACTGAGCCTTGTTGTGACGTTTCTCCAAACTAAGCCTTGTTGTGATGCTTTATTTACTTTTTCTTTGGTGCCTTGCTGGGAGAATTAGAGATGGAATTGAATCTTTTTTGTCCATGTTTTGTCTGCCTTGTATTTTCTTTATGTTTAAGGTTATAGATATCTTCTGTACGGGGAAAGGGGGggttaattatatatatatatatacaaaacgTTATGTTGATTTAAGAGTACGTCTCGAAATAATTCTGTTGAAAAAGCCATTGCACACGTTTGACCCAGAACTGAAAACATCCCATGCATCTCATATATGCATCTCAAATAATTTACACTTGTATATGCAGAGAGCGCTTGGTTTTCTTTCCTAATTCCCAAATAATAGGCATAGTCTCCATCAAACAAGAAGCTTCTTATTATGGGATGTTCTACTGTAAATAAAGATATATCTCTTAAACCTT

Function

NR:

description
PREDICTED: serine/threonine-protein kinase 17A-like

GO: NA

KEGG:

id description
K08804 STK17; serine/threonine kinase 17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934749.1 False 2925 mRNA 0.46 6 7370843 7427263
XM_036934748.1 True 3132 mRNA 0.47 7 7370849 7427263

Neighbor

gene id symbol gene type direction distance location
LOC110535201 LOC106579689 coding upstream 319439 7012348 ~ 7051408 (+)
LOC110536540 NA coding upstream 695521 6659428 ~ 6675322 (+)
LOC110536538 LOC106579687 coding upstream 890351 6379444 ~ 6480492 (+)
LOC110536537 LOC106579698 coding upstream 1017492 6346007 ~ 6353351 (+)
LOC110535194 LOC106579701 coding upstream 1049881 6297705 ~ 6320962 (+)
LOC110535203 LOC106579691 coding downstream 20151 7447414 ~ 7502456 (+)
LOC110536543 LOC106579684 coding downstream 535746 7963009 ~ 7969001 (+)
LOC110535207 LOC106579684 coding downstream 542664 7969927 ~ 7971811 (+)
LOC110536601 NA coding downstream 744609 8171872 ~ 8174025 (+)
LOC118937436 NA coding downstream 747530 8174793 ~ 8175785 (+)
G939179 NA non-coding upstream 43738 7325479 ~ 7327105 (+)
G939177 NA non-coding upstream 45652 7324345 ~ 7325191 (+)
G939134 NA non-coding upstream 83584 7286390 ~ 7287259 (+)
G939063 NA non-coding upstream 159087 7211484 ~ 7211756 (+)
G938983 NA non-coding upstream 241921 7128700 ~ 7128922 (+)
G939235 NA non-coding downstream 9424 7436687 ~ 7436886 (+)
G939238 NA non-coding downstream 12658 7439921 ~ 7440202 (+)
G939384 NA non-coding downstream 123420 7550683 ~ 7550929 (+)
G939387 NA non-coding downstream 124721 7551984 ~ 7552248 (+)
G939449 NA non-coding downstream 224085 7651348 ~ 7651557 (+)
G938723 NA other upstream 349419 7019151 ~ 7021424 (+)
G937889 NA other upstream 1248574 6121584 ~ 6122269 (+)
G937237 NA other upstream 1865514 5504704 ~ 5505329 (+)
G937096 xkr9 other upstream 2226278 5143317 ~ 5144565 (+)
G937051 NA other upstream 2342698 5019905 ~ 5028145 (+)
G939408 NA other downstream 147089 7574352 ~ 7574909 (+)
G939544 NA other downstream 393257 7820520 ~ 7823317 (+)
G939690 NA other downstream 713003 8140266 ~ 8140583 (+)
LOC110535212 LOC106579665 other downstream 769105 8195607 ~ 8379328 (+)
G940102 NA other downstream 947243 8374506 ~ 8377928 (+)

Expression


Co-expression Network