LOC110535203 (LOC106579691)


Basic Information

Item Value
gene id LOC110535203
gene name LOC106579691
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 7447414 ~ 7502456 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934750.1
CCGGGCTGTTTTGTTAGCGAAAGGGGGCGTCGATTACAGTAAATCCTAATGTAATGCAGCTGTTAGGATAGCCTGCATAATGCCATTGAATACCTTATTTTTTATCTTTCTTTGGAGCAGTTTTGCTTCAAAATGATATGATCTAATCGCGGAAACAATGCCACTAGACCAACAGGAACTCGAGCTAACATTGGCGCTGTCACTGCTCCTATCCCGCATTGACAGCTGGGTTACGCGGAGGCTCGTCGGTCGTATGCTTTGTGTGATGCGGGAAGCTGCTGAACGTTTTGTTGTGGAATGAAATCGACATTGTGATAAAGTCTTTGTTCATCTTTTCATTCAAAACGGAGTTTGAAATTCGGCAAGGAGAGATGAAGAATCTACTCCCTGGGATAGTCCTGACGTTTTTGATATTTTTAGAGTGCATAGAGGCCAAAAAGTACTGCTGGTATTTTGAAGGCGGATACCCCATCTACTTTATATGCCGCTCGTACGAGGACTGTTGTGGGACCCGATGCTGTGTCCGAGCCCTCTCCATCCAGCGGCTATGGTACTTCTGgTTGATGCTGATGATGGGGGTGCTATTCTGCTGCGGAGCGGGCTTCTTCTTCCGCAGGTGCATGCACCCCTCGCCCCTCAGCGACGAGCATGCCTTCAACGTCTCCTTCACCAGGCAGCCTGTATCCACGCCAGTATCCCAGCAGCCTGGCATGGTAGGCTATGGCGACCCCGGCGGCGTCATGACTTCCCCCCTCACCCCCGTCTACCCCATCCAGCCCGGCCCCGCCCATATGATGAACGACTACCCTCCACCACCCTCGTACTGCAACCACCCACCCCCGCCTTATGAACAGATTTTCCGGACACCAGAGAAGAAGTAAGTCTCAGTAGCGTTTCCCTCCGTTCCTTCTCCTTCGCTGTGACATCACCAGCAGAAcggacaaggacatgaggggacaGCCACAGTGTCTGTCCACTGTTATACCGTCAGCCCAAGTGCTCACCCAGGTCACAGGGACAAGAAACTGAGAACCACCTAGAGGAACAAACTGTCCTTCCTGAGGACCTGGATACAGACCGGCTCAATATGTCTCCATGGTTTATATTTTCAAAATCATTCATTCTTTCTAATTTACACaaaagcatatatatatatatatatatatatatatatatatatatatatatatatatatacacacacccgtCTTTTTCTGCTGACAGTGCCATCTTGATGAGCATGGTCTGTGACTGATCTGTAGTGAGGCACTCGGACTCCTGTAAATGACACAACTGAGGAATTTCAATGGAGAAtgctgacccaagatcagcacaTTGCTTCTAGATGAACAGATTAATGTTAGCATTATGGTAGAGTAAGCTGACCTAGGACCAGGGCATAAGAACAGACACTGTCTAAAACTGTACACGAGTGACAGCAAATTGGAGTTGAAAGCCACCTTGGAGAAGTTACTACACAAGGTGTTTTAAATAGCTGAAAGGGGTAAAGACTCTGTTAGGATGCGTCCACACTAATTGGGCTGCTTGTCTCGTCCTGAATCCTGTGACTATAAACACTCCGGGCAGGAAGTCTGATCGCTGTGAAGGAGGGGAAACGGATCTGGATTTATCAGACCTATTATGTGCGTTGGGGAGAGCGGTAATTTGGAgaggcagatttttttttttaattttttttttaattcacacTATGTATTCCTACTGTGCTGACTGTGGCGATTCATCCCTCTGGATCGGGACAACAAACTGCCACAAACTGGCAAGAAATCCACTCAACCAGACGGACTCCAAATTGAGACCAAGTCATGTGGTTGTCCATTGTGACAATTTCAGTCAGTTTTTTGGAACTATCACCACAGAGGTTCAGTAATGGTTTTTCAGAGATCTGGACTTCAGTTTGTATAGTAAGGAGCTCGACCAGAATGAGGATTAACTCAGATCAATGCGTTTGTTCCAGACACGCATGCATGCAGGTTGCAACTGGATCACTTTTCACCGAGGAGCTCAAGGACTTTGTTTGCTGTACCTTCGAAGTATTCACGTCCCTTATCTTTTTCCACATGTAGTTGTTACAAAGTGcgatttaaaatgttttttgttgtcgttgtttttgtcaacgatctacacaaaatacttgaATGTCAAAGTGTGGGAAATATCCTACAGCCACCACTAGGCTTGataatatggagagtggtactcagtaatgcattggattggatttgccccaaacatgacACTTTGTTGTCAGGACAAAATGTTCAaggctttgccacattttttgctgtattattttatttattttagtgccttgttgcaaacaggatgcatgttttggaatatttttttttctatacaggcttccttcttttcactctgtcatt

Function

NR:

description
vesicular, overexpressed in cancer, prosurvival protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934750.1 True 2405 mRNA 0.45 5 7447414 7502456

Neighbor

gene id symbol gene type direction distance location
LOC110535202 LOC106579690 coding upstream 20151 7370843 ~ 7427263 (+)
LOC110535201 LOC106579689 coding upstream 396010 7012348 ~ 7051408 (+)
LOC110536540 NA coding upstream 772092 6659428 ~ 6675322 (+)
LOC110536538 LOC106579687 coding upstream 966922 6379444 ~ 6480492 (+)
LOC110536537 LOC106579698 coding upstream 1094063 6346007 ~ 6353351 (+)
LOC110536543 LOC106579684 coding downstream 460553 7963009 ~ 7969001 (+)
LOC110535207 LOC106579684 coding downstream 467471 7969927 ~ 7971811 (+)
LOC110536601 NA coding downstream 669416 8171872 ~ 8174025 (+)
LOC118937436 NA coding downstream 672337 8174793 ~ 8175785 (+)
LOC110535212 LOC106579665 coding downstream 693151 8195607 ~ 8379328 (+)
G939238 NA non-coding upstream 7212 7439921 ~ 7440202 (+)
G939235 NA non-coding upstream 10528 7436687 ~ 7436886 (+)
G939179 NA non-coding upstream 120309 7325479 ~ 7327105 (+)
G939177 NA non-coding upstream 122223 7324345 ~ 7325191 (+)
G939134 NA non-coding upstream 160155 7286390 ~ 7287259 (+)
G939384 NA non-coding downstream 48227 7550683 ~ 7550929 (+)
G939387 NA non-coding downstream 49528 7551984 ~ 7552248 (+)
G939449 NA non-coding downstream 148892 7651348 ~ 7651557 (+)
G939451 LOC106579675 non-coding downstream 150934 7653390 ~ 7653627 (+)
G939452 NA non-coding downstream 151581 7654037 ~ 7654408 (+)
G938723 NA other upstream 425990 7019151 ~ 7021424 (+)
G937889 NA other upstream 1325145 6121584 ~ 6122269 (+)
G937237 NA other upstream 1942085 5504704 ~ 5505329 (+)
G937096 xkr9 other upstream 2302849 5143317 ~ 5144565 (+)
G937051 NA other upstream 2419269 5019905 ~ 5028145 (+)
G939408 NA other downstream 71896 7574352 ~ 7574909 (+)
G939544 NA other downstream 318064 7820520 ~ 7823317 (+)
G939690 NA other downstream 637810 8140266 ~ 8140583 (+)
G940102 NA other downstream 872050 8374506 ~ 8377928 (+)

Expression


Co-expression Network