LOC110536543 (LOC106579684)


Basic Information

Item Value
gene id LOC110536543
gene name LOC106579684
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 7963009 ~ 7969001 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622308.2
TCTGCGTGTTCTTGCGGAGTTCCAACAGGTGTCATCGGGGATGGTGATGAGGACAGACGTGTGAAGGGCGTGCTCAAAGTTGAAGCAGCCTACTGTCCTCCACCGTCCTCATGGCTGAAGAGATCAGGAGAATAGCTGCTCTGCTAGATCAGCCTCTGAGTGAGAGAGACCAGGAACTCATCACTTACGTCAAGCACAAGTTTGCCACCGACTTCAAGAAAGACCACAGTTACTTCCCTGAGAAGGTTGTTACCCGCAGTGACACACAGTATGGCCTCATACAAAATGGCCAGGCCAGGAAGAACTACTACAGGAGACAGGAGCTGCTCAGTAAAGGCTTTTTCTCCCCTGTCAACAAACCATACAAAACAGTGGGAATGCTTTACTCTGACAACGTTGATCTCTTCTCAACCTGGCTCACATCAGAGGACCAAAAGTCACTGAAGACACAGTGGGACAAGAAGTTTGGAAAAAATACAGTGATCTCCAGCAAATTCACTCAGGAGAAGACTAAAAagGAGGAGAACGTCAGAGCCCCTCCAGTGGAGAACCTGAATGGTTTCCTCCAGGTGAAGCAGTACATGAGAGAGATGGTCTCCATCAGACGTGCTCTCCACACTGGGCGCCCCCTCATATATTGCCTCAGAGACCAGGATAAACCATTATTGCTCATGAAGAAACCTGTGCCTCCCAAGACACCATGTGACCGAGCCATATCAGCTGATAAAGAGACTGTACCACCACTGTCCATGTCCATGAACCAACAGGCACTGGacccagaggaagaggagaacctACAGAGGATACAGTACAGGAAGCAGAAGCTGTTCTCAGAGAAACTCCAGTGGATTTACATGGTCCTGTGTGGCATCTCTCACATGCGAAACAGAGATCTGAAGACACTGGTTCCTCTCAACAGCAGCTATGTGAACATCATCATGAAGGACACAGAGAAGACCAACATCCTGCTGAAGCAGTCGCCCAGCTACAACCCTCCGTTGAATTACACCAGGCAGCTGGTGTCCCTGGCCCCAGAGGACTGTCACAGCATCAGCCGTGACGTGTGGGACACCTTCATCAGTCACCAGGACACCACAGAGCCCTCGAAGTTAACCACCACCCGAACCACAGGATATAAAGCTCTGCAGTCAGGGCCCAGGCGCAAGGTGCCTGACGGAGATGGATACATGCCCCCatggctgctactgctgctggatgAGAACAGTCAGTacacaatatcacacacacaggACTGA

Function

NR:

description
uncharacterized protein LOC110536543

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622308.2 True 1256 mRNA 0.51 12 7963009 7969001

Neighbor

gene id symbol gene type direction distance location
LOC110535203 LOC106579691 coding upstream 460553 7447414 ~ 7502456 (+)
LOC110535202 LOC106579690 coding upstream 535746 7370843 ~ 7427263 (+)
LOC110535201 LOC106579689 coding upstream 911605 7012348 ~ 7051408 (+)
LOC110536540 NA coding upstream 1287687 6659428 ~ 6675322 (+)
LOC110536538 LOC106579687 coding upstream 1482517 6379444 ~ 6480492 (+)
LOC110535207 LOC106579684 coding downstream 926 7969927 ~ 7971811 (+)
LOC110536601 NA coding downstream 202871 8171872 ~ 8174025 (+)
LOC118937436 NA coding downstream 205792 8174793 ~ 8175785 (+)
LOC110535212 LOC106579665 coding downstream 226606 8195607 ~ 8379328 (+)
LOC118937462 NA coding downstream 325345 8294346 ~ 8337640 (+)
G939580 NA non-coding upstream 48692 7913971 ~ 7914317 (+)
G939542 NA non-coding upstream 144120 7815789 ~ 7818889 (+)
G939535 NA non-coding upstream 152976 7808448 ~ 7810033 (+)
G939518 NA non-coding upstream 172591 7774915 ~ 7790418 (+)
G939510 NA non-coding upstream 203746 7756949 ~ 7759263 (+)
G939607 NA non-coding downstream 5267 7974268 ~ 7974559 (+)
G939608 NA non-coding downstream 6738 7975739 ~ 7979846 (+)
G939619 NA non-coding downstream 23160 7992161 ~ 7992439 (+)
G939630 NA non-coding downstream 41483 8010484 ~ 8010832 (+)
G939631 NA non-coding downstream 49801 8018802 ~ 8019291 (+)
G939544 NA other upstream 139692 7820520 ~ 7823317 (+)
G939408 NA other upstream 388100 7574352 ~ 7574909 (+)
G938723 NA other upstream 941585 7019151 ~ 7021424 (+)
G937889 NA other upstream 1840740 6121584 ~ 6122269 (+)
G937237 NA other upstream 2457680 5504704 ~ 5505329 (+)
G939690 NA other downstream 171265 8140266 ~ 8140583 (+)
G940102 NA other downstream 405505 8374506 ~ 8377928 (+)
LOC110536544 LOC106590277 other downstream 410846 8379847 ~ 8497020 (+)
G940247 NA other downstream 470479 8439480 ~ 8439775 (+)

Expression


Co-expression Network