LOC110535207 (LOC106579684)


Basic Information

Item Value
gene id LOC110535207
gene name LOC106579684
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 7969927 ~ 7971811 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620072.1
TGTAGACCAGTCAGGCATGCTGGAGAGAGCCAAGGAGCATTACCGGGATGTGAAGAAGGTTCTGAACATCCCAATGGAGTCAGTAGTGTTTCAAAAGAGAAAGAAccgagaggagaggatgagaactCTTTTCAATGCTCTAATGGCCTCAAAGTCCGACGCTGGTCTGTCCTCACTCCTTACCTCTCTGAAGAGTGGGCTGAAGGAGCCCAAATCCACCACTGGTCTCTGGTTTGCGACACTGCAGAGTGATGCCACAGAATTGTCTGGAGACAGAGACTCCCAATACAACCTCATACTGCAGAAGATCTCAGAGTTTCAAAGCTTCTCCAACAAAAAGCTCCCCTACTCCAAGGAGAAGTTCTGTCTCCTGGTCCTCTCCATGTCACCCAATCAGCTGCTTCGACCGGCCATGCAGGAAGCACTGCTCTTCCTCACGGAGAACGTGCTGCTGTTGTTGCCGCGGCAACTCAAACAGTGGTACCAGTACCTGAAGCTCCCCTTCCCCACCACTGCAACCGCCTCCTAAAAAAAGGATCCTCCTACTTGCACTGGTGCTCTCTCTGTTCTTCACTACCTGTCTACAATGTGGGCCTGGGACTTACAGGCCTGGGTTGAGTCTGAAATGGTTCCTTATCCTCAACATAGACCCGTAATATTGGGGAATATAGTCATTTCAGACAGCCCTGGGTTCTTGGTGGGATATCCAGTGTTGGGGGCTCAGGTCAAGATGATCTGTTAACTGGTTGATACATTAAAATGTGTTAAAAAAGA

Function

NR:

description
uncharacterized protein LOC110535207

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620072.1 True 774 mRNA 0.49 4 7969927 7971811
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110536543 LOC106579684 coding upstream 926 7963009 ~ 7969001 (+)
LOC110535203 LOC106579691 coding upstream 467471 7447414 ~ 7502456 (+)
LOC110535202 LOC106579690 coding upstream 542664 7370843 ~ 7427263 (+)
LOC110535201 LOC106579689 coding upstream 918523 7012348 ~ 7051408 (+)
LOC110536540 NA coding upstream 1294605 6659428 ~ 6675322 (+)
LOC110536601 NA coding downstream 200061 8171872 ~ 8174025 (+)
LOC118937436 NA coding downstream 202982 8174793 ~ 8175785 (+)
LOC110535212 LOC106579665 coding downstream 223796 8195607 ~ 8379328 (+)
LOC118937462 NA coding downstream 322535 8294346 ~ 8337640 (+)
LOC110536544 LOC106590277 coding downstream 409559 8379847 ~ 8497020 (+)
G939580 NA non-coding upstream 55610 7913971 ~ 7914317 (+)
G939542 NA non-coding upstream 151038 7815789 ~ 7818889 (+)
G939535 NA non-coding upstream 159894 7808448 ~ 7810033 (+)
G939518 NA non-coding upstream 179509 7774915 ~ 7790418 (+)
G939510 NA non-coding upstream 210664 7756949 ~ 7759263 (+)
G939607 NA non-coding downstream 2457 7974268 ~ 7974559 (+)
G939608 NA non-coding downstream 3928 7975739 ~ 7979846 (+)
G939619 NA non-coding downstream 20350 7992161 ~ 7992439 (+)
G939630 NA non-coding downstream 38673 8010484 ~ 8010832 (+)
G939631 NA non-coding downstream 46991 8018802 ~ 8019291 (+)
G939544 NA other upstream 146610 7820520 ~ 7823317 (+)
G939408 NA other upstream 395018 7574352 ~ 7574909 (+)
G938723 NA other upstream 948503 7019151 ~ 7021424 (+)
G937889 NA other upstream 1847658 6121584 ~ 6122269 (+)
G937237 NA other upstream 2464598 5504704 ~ 5505329 (+)
G939690 NA other downstream 168455 8140266 ~ 8140583 (+)
G940102 NA other downstream 402695 8374506 ~ 8377928 (+)
G940247 NA other downstream 467669 8439480 ~ 8439775 (+)

Expression

LOC110535207(LOC106579684) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
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LOC110535207(LOC106579684) Expression in each Bioproject

Bar chart with 7 bars.
LOC110535207(LOC106579684) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 5.
End of interactive chart.

Co-expression Network