LOC110535212 (LOC106579665)


Basic Information

Item Value
gene id LOC110535212
gene name LOC106579665
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 8195607 ~ 8379328 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620079.2
GTGTGTACTAGTCTGAAGCCCCCTCATACATGAGACAACTGAGGATGAAGCCCAGTCCTTCCGTGAAATAAACAAAGCGCATCGGAAGTCCCCAAAAAGCGCATAATTGACCAAGCGTTCTGTTTGACGATGAGGAAAGTGTGAAAGAGGCGCAGTCGCCACCACCGGTGAGCGCACAGAGTACTGACCACACGCGGGACACTTCTCCTCCAGAGCGACTACGTCCCAACGACCTAGGACGGACTTTATCCAACGATTTATTCAACTATTTACTTGGCTGCTGATTCCTCTCTGTTTCGTCCATCGGGCGTACGGAAACAGGGAAGAATAGGTGGGCCAGGAGAAAAGGGGAAAAAGACGCAACTATGGCAAAAGCAAGGCTGACTGACTCCCCCGGAGTGTGCAATGAGAAATTACAAGAAGTAGACTCTCGTCTTGCCATCCACCAGAAAGGATATCATATTTGACAGCTCAAGGGACGTAAACAAAACATGCGCTCCTCTTAGTGGAAACTAGAAACTGTTTCCGGATTAAGTGGTGGCACATTTTCTATATTCTCTGAGAGGACTGTCCACTTGGTCCGTCTCATGAAGTCTTGCTCATGCTTCGGTCGAGGAGTACAGTATTTATTATTCTATGACGTAGGGCACAGTGATTGTCGTCCGTTTTGTCGGGACTCGTAGACTTCTAGGTCCGCATTGGCGACAGAAAGTCCAAAAACTTCAGGGGGATAGAGCAAAGATGCCGGTTCGACGGGGTCACGTGGCACCACAGAATACTTTCCTCGATACTATCATCAGGAAATTTGATAGTCAATGTCGTAAGTTCATCATCGCCAATGCCCGGGTGGAGAACTGTGCCATCATATTCTGCAACGATGGCTTCTGCGCCATGTGCGGCTACTCGCGAGCAGAGATCATGCAGAAACCCTGTACCTGTAACTTCCTGTACGGCCCTCAAACCAAGCGGTTGGCCATCGCCCAGATGGCCCAAGCACTGCTGGGCTCGGAAGAGAGGAAAATGGAGATCAACCTGTACAGGAAGGACGGTAGGACCatacgcagtgtgtgtgtgtgtgtgtgtgcgtgtgtgttttgcgGTGAGGTTGAAAACTCGTACAAGTTCAACCTGCTTAGTTACTATGGTTTCCAAGAACCACTGTACCATATCTTCTATACTTGGTTCATATTCATGACTGTAGTTGCTAGTCTCTTGGTGTATTCTCAAGTCCCCCCTCTGATGCCTGATCATTGGTTGTGTCAGTCATCCTGGTTTGTGAGGTCATATGGGGAAAACACTCAGGAGGAATATCCCGGGAACATGCAGTGCTTCCTGGTCTATCAGGCTCTGGGCTGGTGGCCAGTGACACACTACTCAATCACCTCCAGGTAATAGAGATACACACCCCCCACCGGGTGAGATATGTCAGACAGGTCCAACTGAGGAAAGCGCTACAGTATGATAGAGGAGTCAAAGAGAAAGCAAGACTGATGAAGTGAGATACTGAGAAAAGGTAtaggtgaaaaaaataaaggaagagagagggcggCTGCAGTTCTCAGTTCCTGGAGAGTTCCACTggaaggaggtgagagagaggtgagagagaggtgagagacaggtgagagagaggtgagagacaggtgacagacaggtgagagagaggtgagagagagaggtgagagagagtagaaagacaGGAGGAAAGTAAGACAAGGGAGAGgttagaggagaaagagagagagagaaagagagagagagagaaacatagcagAGGTGAAAGGAGAGAGGCTCAGACTGAGGAGGTGGTATTTATCAGTTCCTCTCCTAGCCTTGTTCGTTTTGATTAAGAGGAGAGCTGCACAGCAGCAGCACAGAGCTACATAGCtaactgtagcagcagtagtagaacGCTACATGGCTAGCTGTAGCAGCAGCACAGAGCTACATAGCTAACTGTAGCAGCAGTAGAGCGATACATGGCTAGCTGTAGCAGCAGTAGAGCGCTACATGGCTagctgtagcagcagtagtagaacGCTACATGGCtagctgtagcagcagcagtagaacgCTACATGGCTAGCTGTAGCAGCAGTAGAGGGCTACATGGCTAACTATAGCAGCAGTAGAGTGCTACTTGGCTAGCTGTAGCAGCAGTAGAGTGCTACTTGGCTAGCTGTAGCAGCAGTAGAAGGCTATATGGCTAgctatagca
>TU1072090
GATTCCTCTCTGTTTCGTCCATCGGGCGTACGGAAACAGGGAAGAATAGGTGGGCCAGGAGAAAAGGGGAAAAAGACGCAACTATGGCAAAAGCAAGGCTGACTGACTCCCCCGGAGTGTGCAATGAGAAATTACAAGAAGTAGACTCTCGTCTTGCCATCCACCAGAAAGGATATCATATTTGACAGCTCAAGGGACGTAAACAAAACATGCGCTCCTCTTAGTGGAAACTAGAAACTGTTTCCGGATTAAGTGGTGGCACATTTTCTATATTCTCTGAGAGGACTGTCCACTTGGTCCGTCTCATGAAGTCTTGCTCATGCTTCGGTCGAGGAGTACAGTATTTATTATTCTATGACGTAGGGCACAGTGATTGTCGTCCGTTTTGTCGGGACTCGTAGACTTCTAGGTCCGCATTGGCGACAGAAAGTCCAAAAACTTCAGGGGGATAGAGCAAAGATGCCGGTTCGACGGGGTCACGTGGCACCACAGAATACTTTCCTCGATACTATCATCAGGAAATTTGATAGTCAATGTCGTAAGTTCATCATCGCCAATGCCCGGGTGGAGAACTGTGCCATCATATTCTGCAACGATGGCTTCTGCGCCATGTGCGGCTACTCGCGAGCAGAGATCATGCAGAAACCCTGTACCTGTAACTTCCTGTACGGCCCTCAAACCAAGCGGTTGGCCATCGCCCAGATGGCCCAAGCACTGCTGGGCTCGGAAGAGAGGAAAATGGAGATCAACCTGTACAGGAAGGACGgTGTGTGTTTCCTGTGTCTGGTGGATGTGGTGCCGGTGAAGAATGAGGATGGCCTGGTGATCATGTTCATCCTCAACTTTGAAGTCATGTCAGACAACAAACAGCCCAACC

Function

NR:

description
PREDICTED: potassium voltage-gated channel subfamily H member 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620079.2 False 2218 mRNA 0.49 3 8195607 8226038
TU1072090 True 877 TUCP 0.49 3 8196368 8379328

Neighbor

gene id symbol gene type direction distance location
LOC118937436 NA coding upstream 19822 8174793 ~ 8175785 (+)
LOC110536601 NA coding upstream 21582 8171872 ~ 8174025 (+)
LOC110535207 LOC106579684 coding upstream 223796 7969927 ~ 7971811 (+)
LOC110536543 LOC106579684 coding upstream 226606 7963009 ~ 7969001 (+)
LOC110535203 LOC106579691 coding upstream 693151 7447414 ~ 7502456 (+)
LOC118937462 NA coding downstream 68308 8294346 ~ 8337640 (+)
LOC110536544 LOC106590277 coding downstream 155332 8379847 ~ 8497020 (+)
LOC110535213 LOC106579667 coding downstream 424400 8650438 ~ 8685656 (+)
LOC110535219 NA coding downstream 573502 8799540 ~ 8802257 (+)
LOC118937463 NA coding downstream 619527 8845565 ~ 8855476 (+)
G939970 NA non-coding upstream 39991 8155402 ~ 8155616 (+)
G939686 NA non-coding upstream 65234 8130061 ~ 8130373 (+)
G939660 NA non-coding upstream 109270 8084736 ~ 8086337 (+)
G939597 LOC106603998 non-coding upstream 139718 8046947 ~ 8055889 (+)
G939635 NA non-coding upstream 154085 8041066 ~ 8041522 (+)
G940087 NA non-coding downstream 124344 8350382 ~ 8351339 (+)
G940105 NA non-coding downstream 161982 8388020 ~ 8388242 (+)
G940108 NA non-coding downstream 171534 8397572 ~ 8397803 (+)
G940110 NA non-coding downstream 175331 8401369 ~ 8401606 (+)
G940233 NA non-coding downstream 184080 8410118 ~ 8410328 (+)
G939690 NA other upstream 55024 8140266 ~ 8140583 (+)
G939544 NA other upstream 372290 7820520 ~ 7823317 (+)
G939408 NA other upstream 620698 7574352 ~ 7574909 (+)
G938723 NA other upstream 1174183 7019151 ~ 7021424 (+)
G937889 NA other upstream 2073338 6121584 ~ 6122269 (+)
G940102 NA other downstream 148468 8374506 ~ 8377928 (+)
G940247 NA other downstream 213442 8439480 ~ 8439775 (+)
G940313 NA other downstream 306502 8532540 ~ 8540867 (+)
G940376 NA other downstream 425466 8651504 ~ 8652993 (+)
LOC110535221 LOC106579618 coding downstream 477778 8857106 ~ 8860218 (+)
G940234 NA non-coding downstream 31104 8410432 ~ 8410666 (+)

Expression


Co-expression Network