LOC110536544 (LOC106590277)


Basic Information

Item Value
gene id LOC110536544
gene name LOC106590277
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 8379847 ~ 8497020 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934763.1
CGGTGAACAACAAGTCCAACATCCTCAACTCCACGTCGGACTCAGACCTCATGCGTTACCATACCATCAGTAAAATCCCTCAGATCACCCTGAACTTCGTGGACTTCAGGGCGGACCCCCTCATCGCGCTGCCCGGGGGGGACATGGACATCATAGCCCCTTGCAAGCTCATCGACCGCACACACCACGTCACCGAGAAAGTCACTCAGGTGCTGTCACTGGGTGCCGACGTCCTCCCAGAGTACAAGCTCCAGGCACCTCGAATCCACAAGTGGACCGTCCTCCACTACAGCCCATTCAAGGCGGTGTGGGACTGGCTCATCCTGCTGCTGGTCATCTACACGGCCATCTTGACCCCTTACTCCGCCGCCTTCCTCCTCCACGACCAGGAAGAGGCAGCCATGTTGAACTGTGGCTACTCGTGCTCGCCGCTCAACGTGGTCGACCTCATCGTGGACATCATGTTCATCGTGGACATTGTCATCAACTTCAGGACGACATACGTCAACACTAACGACGAGGTGGTCAGCGCCCCGCTGAGGATAGCGATCCACTACTTCAAGGGCTGGTTCCTCATCGACATGGTGGCAGCCATCCCCTTCGACCTGCTCATCTACCGCAgcggagaggagACGACCACTCTGATTGGCCTGCTGAAGACGGCCCGCCTCCTCCGGCTAGTCCGCGTGGCGAGGAAACTGGACCGCTACTCAGAGTATGGCGCCGCCGTCCTCTTCCTGCTCATGTGCACGTTCGCCCTCATCGCCCACTGGCTGGCTTGCATCTGGTACGCCATCGGCAGCGTGGAACGCAACGGCAGCATCGGCTGGCTCCACACGCTGGGCGAGTCGTTGGGGAAACACTACAACAACACGGTGCGGGGCTCGGGCCCCTCCATAAAGGACAAGTATGTCACAGCCCTCTATTTCACCTTCTCCAGTCTGACCAGCGTGGGCTTTGGCAACGTCTCCCCCAACACCAACTCTGAGAAGATATTCTCCATCTGTGTCATGCTCATAGGATCTCTGATGTACGCCAGTATTTTTGGTAACGTGTCGGCCATCATCCAGAGGTTGTACTCGGgtacggccaggtaccacacccAGATGCTGCGGGTCCGAGAGTTCATCCGTTTCCATCAGATCCCCAACCCACTGAGGCAGCGGCTGGAAGAGTACTTCCAACACGCCTGGTCCTACACTAACGGCATTGATATGACCgctgtgTTGAAGGGGTTCCCAGAGTGTCTCCAGGCTGACATATGCCTCCACCTTAACCGTACCCTCCTGGAGAACTGCAAGGCCTTCAAGGGCTCCACGAAGGGCTGTCTGCGGGCCCTGGCCATGAAGTTCAAGACCACCCACGCCCCGCCTGGCGACACCCTGGTGCACGCCGGCGACGTGCTCACCGCCATCTACTTCATCTCCCGTGGCTCCATCGAGATCCTCAGAGGCGACGTGGTGGTGGCCATCTTGGGGAAGAATGACATCTTTGGCGAGCCTATCAACCTGTACGGGCGGGCTGGAAAGTCCAATGCTGATGTGAGAGCTCTGACCTACTGTGACCTCCATAAGATCCACAGAGAGGACGTCCTGGAGGTGTTAGACATGTACCCAGAGTTTTCCGACCACTTCTGGATGAACCTGGAGATCACCTTTGACCTCCGGGATGCCAATATGATTCCAGGCTCACCAGAAAGTGACAACTCAGACTGTGTAGGATTCAACAAACTGCGCAGACGCAAACTATCCTTCCGGCGCCGGACAGAGAAGGACGACGCCGATGCAGGAGAGAATAAAAAGGAGAGATCCAACAAGCCAGTTCGGCGTAGACGGAAGGAGGCGGCCAGTAAGCAGGGGGTGGGGCTTAAGCCAGACTGGGAGGGACCTCGGAGTTCAGTGTCCACCCACTCCAGCAGTGGCGAGGGGGAGGAGTCTGTGGTCACATGCCCCGCCCCTCAGTCAGCTCTGCATGAGATGTCCCCGGCTCAGGCCACCTCTCTGATCTTTAGGGACAATCccgagggggagggggagggggaccaCAAAGGGGGCAACACCTGCAATGCACTCTCAGGAGCATTTTCAGGGGTCTCAAATATCTTCAGTTTCTGGGGGGAGAGTCGGGGCAGTCGTGAGTACCAGGAGTTGCCTCGCTGCAGCCTGCCATCCTCCCCGCCTCTCAACAATATCAGCCGCAGGCAGCGCACCGAGCTGGACAACAGACTGGACCTGCTGCAGCAACAACTCAACAGgCTGGAAACGAGGATGTCGACAGACATCGGGGAGATCATGCAGCTACTACAACGTCAGATGGCCCTTGTGCCCCCAGCCTACAGCACCGTGTTGACTGCCCCTCAGGCCTCCCCctaccctggtcctggtcctggtcctggtcctggtcctggtcctggtcctggtcctggtcctggtccacTCTCTCAGGGCTTTGAGGAGTTCCCCGGCAAGTCCGCAGCCCTGCGGGCTGTCCGCAGCCCTGCTGAGCTACACCCTGAAAACTGGCCTCTGGTCAGCCCAACTGAGACACGACGAGCCCCCTCTGGACTGGGCAGCCTGGAGCTAGACCTAGGGGTTGAGGAAAGGTTGGGGTCAGGGGTGGGGGCAGGTTCAGGAACAGGGTCAATGGCAGAGTTGGGGGCAATTGCAGGGGCGAGTGGACTGGACCCTGATGCCCAACGGAGGCTCTCTCTGCCTCAGCCACAAATGCATCTGGACTCACAGTCACCGAAAAGGCACAGCTCTGACCCTAGGGGGAGCTAATgagcaggggagggaggagaaaatggacagagagggagaagagtggTATCTCTGTTTTCCCTTCTCtcacggagggggggggggggtccttccTTCGACCTCTGGAACCTCACCTACAGGCTCTGAGTGAGCCTCACCTCTGACTTCTAACCTCTGACCTGGGGAGAAACCTTGTTGGGAGAGGGGGGATGTCTCTCCCTTTCAGGGCTCCCTTCCCCTACCCCGGTTCCTAAAGTTACCACAAGGTTACCACAAGGTTACCAAACCCACGggctggaagagagaggggagcaagATCCTCCTGAACTccactctgacctctgacctctgacctggagAAATGACTACAGAACACATGACCGGTTCTGTTCAGAACATCCCTGTACTGCTCTATCCAGGAGCCCTGAGCAAGGTCGGTTTCATTTCGGTTCGATTATTAAAAAATAATCAACGATTTCCTCATTTTTAaatatcacttattaaccataatttattcacattactttactttaataaaatattttagttgttgtgtatattacattagttttaATTTGATGACTTTacta
>TU1072200
CCTGCTGTGGCCCGAGGACCAACGCACCTTGCTTGGCTCAGAGCCTGCAACTTCCTCGATGCCCCTCGGCCAGTCGTCGCCCCGCATCACCCTCCGGATGTTTAACCCAGATGCCTCGGTGTCCAACTGCAGCCTGTCACACAGCCGCTCCCGCGAGAGCTTCCACAGCTTACGGCGGGCGTCGTCGGTGGATGACATCGAGGCCATGCGGCCTCCGTCGTGTCGGAAGTACAGCACGGTCGGGCCCATCCACAACAGCACAGGGGCGGTGAACAACAAGTCCAACATCCTCAACTCCACGTCGGACTCAGACCTCATGCGTTACCATACCATCAGTAAAATCCCTCAGATCACCCTGAACTTCGTGGACTTCAGGGCGGACCCCCTCATCGCGCTGCCCGGGGGGGACATGGACATCATAGCCCCTTGCAAGCTCATCGACCGCACACACCACGTCACCGAGAAAGTCACTCAGGT
>TU1072411
acaaacaataTAAAACAATAGAATATGCCTTCATACCCtattctcccctttctcccctctctcccctctcttcttcacaAACAGGAGCATTTTCAGGGGTCTCAAATATCTTCAGTTTCTGGGGGGAGAGTCGGGGCAGTCGTGAGTACCAGGAGTTGCCTCGCTGCAGCCTGCCATCCTCCCCGCCTCTCAACAATATCAGCCGCAGGCAGCGCACCGAGCTGGACAACAGACTGGACCTGCTGCAGCAACAACTCAACAGgCTGGAAACGAGGATGTCGACAGACATCGGGGAGATCATGCAGCTACTACAACGTCAGATGGCCCTTGTGCCCCCAGCCTACAGCACCGTGTTGACTGCCCCTCAGGCCTCCCCctaccctggtcctggtcctggtcctggtcctggtcctggtcctggtcctggtcctggtcctggtc

Function

NR:

description
PREDICTED: potassium voltage-gated channel subfamily H member 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934763.1 False 3349 mRNA 0.57 11 8381370 8497020
TU1072200 False 477 TUCP 0.61 2 8379847 8381580
TU1072411 True 441 lncRNA 0.56 2 8490139 8495216

Neighbor

gene id symbol gene type direction distance location
LOC118937462 NA coding upstream 43730 8294346 ~ 8337640 (+)
LOC110535212 LOC106579665 coding upstream 155332 8195607 ~ 8379328 (+)
LOC118937436 NA coding upstream 205585 8174793 ~ 8175785 (+)
LOC110536601 NA coding upstream 207345 8171872 ~ 8174025 (+)
LOC110535207 LOC106579684 coding upstream 409559 7969927 ~ 7971811 (+)
LOC110535213 LOC106579667 coding downstream 153418 8650438 ~ 8685656 (+)
LOC110535219 NA coding downstream 302520 8799540 ~ 8802257 (+)
LOC118937463 NA coding downstream 348545 8845565 ~ 8855476 (+)
LOC110535221 LOC106579618 coding downstream 360086 8857106 ~ 8860218 (+)
LOC100135908 LOC100135908 coding downstream 372556 8869576 ~ 8880714 (+)
G940087 NA non-coding upstream 30031 8350382 ~ 8351339 (+)
G939970 NA non-coding upstream 225754 8155402 ~ 8155616 (+)
G939686 NA non-coding upstream 250997 8130061 ~ 8130373 (+)
G939660 NA non-coding upstream 295033 8084736 ~ 8086337 (+)
G939597 LOC106603998 non-coding upstream 325481 8046947 ~ 8055889 (+)
G940297 NA non-coding downstream 5965 8502985 ~ 8507380 (+)
G940303 NA non-coding downstream 15985 8513005 ~ 8573520 (+)
G940350 NA non-coding downstream 110395 8607415 ~ 8607781 (+)
G940355 NA non-coding downstream 115794 8612814 ~ 8615576 (+)
G940376 NA non-coding downstream 154484 8651504 ~ 8652993 (+)
G940102 NA other upstream 3442 8374506 ~ 8377928 (+)
G939690 NA other upstream 240787 8140266 ~ 8140583 (+)
G939544 NA other upstream 558053 7820520 ~ 7823317 (+)
G939408 NA other upstream 806461 7574352 ~ 7574909 (+)
G940313 NA other downstream 35520 8532540 ~ 8540867 (+)
G941893 NA other downstream 1748089 10245109 ~ 10245506 (+)
G942702 NA other downstream 2613706 11110726 ~ 11111336 (+)
G940281 NA non-coding upstream 15160 8474695 ~ 8474979 (+)
G940277 NA non-coding upstream 26730 8463111 ~ 8463409 (+)
G940276 NA non-coding upstream 27809 8462035 ~ 8462330 (+)
G940275 NA non-coding upstream 28171 8461762 ~ 8461968 (+)
G940267 NA non-coding upstream 31585 8458232 ~ 8458554 (+)
G940247 NA other upstream 50364 8439480 ~ 8439775 (+)
LOC110536544 LOC106590277 other upstream 108559 8379847 ~ 8497020 (+)
G940105 NA non-coding downstream 6440 8388020 ~ 8388242 (+)
G940108 NA non-coding downstream 15992 8397572 ~ 8397803 (+)
G940110 NA non-coding downstream 19789 8401369 ~ 8401606 (+)
G940233 NA non-coding downstream 28538 8410118 ~ 8410328 (+)
G940234 NA non-coding downstream 28852 8410432 ~ 8410666 (+)

Expression


Co-expression Network