LOC100135908 (LOC100135908)


Basic Information

Item Value
gene id LOC100135908
gene name LOC100135908
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 8869576 ~ 8880714 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124275.1
GCAGTTCTTCTTCATAGACCAATCAGATATGAGTTGTAGTTGGTGCTAAAGGGCACACGAcgctcttattctctctctctatatatatttatttttttagactTTTATATTTCATTACCCCATTTTAGTATTTTTACAAGATGTCGTGCCTTTTGCTTGGACTTATCAGAAGACGGGGTGGAGTGGGGACATCCGTGGGGGTCCGCTCCTTAGCCTCGACCCCCTCCCTGCCGCCAGCGGTGGCTGACTTTGTGAAGAGGGCCGTGGATGAGTGCAAGCCTGCCAATGTGCATGTGGTGACGGGGAGCGCGGAGGAGTCCGCTCACATCCTAGCTGGCCTGGAGAAAGACGGCATGGTGAAGAGGCTACCCAAGTATGAGAACTGCTGGCTGGCACGTACAGACCCCAAGGACGTGGCTCGGGTGGAGAGTAAGACTGTGATCGTCACCAAGAACCAGAGGGACACCATCCCTATCCCCGATGGGGGGGCTAAGAGCCAGCTGGGCAGCTGGATGAGTGAGGGTGACTTCCAGAAGGCCAGACAGGACCGCTTCCCAGGCTGCATGTCAGGTCGAACCATGTATGTGATCCCCTTCAGCATGGGCCCGGTGGGCTCTCCGCTGTCTAAGTTTGGCGTGCAGGTGACAGACTCACCCTACGTGGTGGCCAGTATGGGCATTATGACGCGCATGGGCACCCCCGTCATGGACAAACTGGCACAGGGGGCAGAGTTTGTACGCTGCCAGCACTCCCTCGGTCGGCCCCTCCCACTGAAAGCTCCCCTGGTCAACTCGTGGCCGTGTAACCCAGAGAAGGTGCTGATCTCCCACCTGCCAGACACCAGGCAGATCCTGTCGTTCGGCAGTGGCTACGGAGGCAACTCCCTGCTGGGGAAGAAGTGCTTCGCCCTGAGGATCGCCTCGCGCATCGCCAAGGACGAGGGCTGGCTGGCCGAACACATGCTGATCCTGGGCATCACCAATCCTCAGGGAGTGAAGCGCTACGTGGCGGCGGCATTTCCCAGTGCCTGTGGGAAAACTAACCTGGCCATGATGAAGCCAGCGCTGCCTGGCTGGACTGTGGAGTGTGTAGGAGACGACATCGCCTGGATGAAGTTCGACAGTCAGGGTAAACTCAGGGCAATCAACCCAGAGAACGGCTTTTTCGGTGTGGCTCCCGGCACGTCCCTGAAGACCAACCCTCATGCCATGGCGACCATCGCCAAAAACACTGTGTTCACCAATGTGGGTGAGACCAGTGACGGAGGGGTGTGGTGGGAGGGACTGGACCCCCCTTCCGCAGGGGTCTCCCTGACCGACTGGCACGGCAAATCCTGGAAAGCAGGAGACTCTGGCCCGTGTGCTCATCCCAACTCCAGGTTCTGTACCCCGGCGGCCCAGTGCCCCATCATCGACCCCCAGTGGGAGAGTGACGAGGGTGTGCCCATCGATGCCATCATCTTCGGGGGCAGGAGGCCAGAGGGAGTCCCTCTGGTGTACGAGTCGTTTAACTGGCGCCACGGTGTGTTTGTAGGAGCCTCTATGAGGTCTGAGGCCACAGCAGCTGCTGAGTACAAAGGCAAGGTTATCATGCACGACCCCTTCGCCATGCGCCCCTTCTTCGGCTACAACTTCGGTGACTACCTAGCCCACTGGCTGAGCATGGAGACCCGCAAGGGCGCCACCCACCTGCCCAAGATCTTCCACGTCAACTGGTTCCGGAAGGACCCCGCGTCGGGCTCTTTCCTCTGGCCGGGTTTCGGTGACAACGCCCGCGTTCTGGAGTGGATCTTCAAGCGCTGCGGCCGCGAGAGGGAGGACGAGGCGGCCAAGAAGAGCATGGTGGGCTGGGTGCCACTGGAGGGAGCCATCAACCTGCAGGGACTGGGCAGCAAGGTGGACATGGGTGCCCTCTTCGACCTGCCCAAGGCCTTCTGGGAGAAGGAGACCCAGGAGCTGAGGGCGTACTTTACCCAGCAGGTGGGAGCCGACCTCCCCCAACAGGTGGAGGGAGAGCTGAAGGCTCTGGAGGACAGGATCAGGAATTGAGAGGTGGAGGGACCAGATGattcagagagagacagtattgaCTATTGGACATTACACTACGCTGATGCTGCTAAATGATATGGTAGTACTGACAAAAAATTACTAACAAGCTAATTTCAATTTTGTGGAAACTGCTTTGCGTATATGTGGGTAGATGTAAACCAAAGTTTCTAAATTGTAAGAAAATACAATGAGATGATGTGACTGCATCACTGAAGAATGCAGTTCATGCTATCACACACTGTCAGTGGCTATATCAGTAGGTTGTAGGTGATGGAGCAGAATCGGTGTTTAGCAGTACCTTACTGACATCTTGCAAAGAAGTATAAAGGTATTGGATGTTTACAAGCTTTAGCCCAAATAATCTAATCTAATCAGGACAAGCTTAAATATCCATATtcatttaaacatttttaaaCAGCATTTTTTTTGTCACTTTTGTATTGTTTCCAATAAAAATGATTATGAGCTAATGTTTACACATGAGAAATGTAACATGTTGGACCAATAAAAATGATTTAATGTCAAGGTTTTTATTACAGTGCAATTAATAAACAACCTCAAATTCA

Function

NR:

description
phosphoenolpyruvate carboxykinase

GO: NA

KEGG:

id description
K01596 E4.1.1.32, pckA, PCK; phosphoenolpyruvate carboxykinase (GTP)

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124275.1 True 2617 mRNA 0.54 10 8869576 8880714

Neighbor

gene id symbol gene type direction distance location
LOC110535221 LOC106579618 coding upstream 9358 8857106 ~ 8860218 (+)
LOC118937463 NA coding upstream 14100 8845565 ~ 8855476 (+)
LOC110535219 NA coding upstream 67319 8799540 ~ 8802257 (+)
LOC110535213 LOC106579667 coding upstream 183920 8650438 ~ 8685656 (+)
LOC110536544 LOC106590277 coding upstream 372556 8379847 ~ 8497020 (+)
LOC110535228 LOC106579619 coding downstream 9026 8889740 ~ 8933322 (+)
LOC118937299 NA coding downstream 40526 8921240 ~ 8925741 (+)
LOC110535229 LOC106579621 coding downstream 57641 8938355 ~ 8968485 (+)
LOC118937300 NA coding downstream 92206 8972920 ~ 8976404 (+)
LOC110535237 LOC106579624 coding downstream 398211 9278925 ~ 9296959 (+)
G940461 NA non-coding upstream 31742 8837611 ~ 8837834 (+)
G940437 NA non-coding upstream 66021 8803230 ~ 8803555 (+)
G940380 NA non-coding upstream 80663 8788498 ~ 8788913 (+)
G940379 LOC100136486 non-coding upstream 126452 8710911 ~ 8743124 (+)
G940493 NA non-coding downstream 51157 8931871 ~ 8976279 (+)
G940520 NA non-coding downstream 148840 9029554 ~ 9106845 (+)
G940515 NA non-coding downstream 166070 9046784 ~ 9242084 (+)
G940526 NA non-coding downstream 167891 9048605 ~ 9073783 (+)
G940376 NA other upstream 217055 8651504 ~ 8652993 (+)
G940313 NA other upstream 328709 8532540 ~ 8540867 (+)
G940247 NA other upstream 429801 8439480 ~ 8439775 (+)
G941893 NA other downstream 1364395 10245109 ~ 10245506 (+)
G942702 NA other downstream 2230012 11110726 ~ 11111336 (+)
G944957 NA other downstream 4506836 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 5183834 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 5274640 14154784 ~ 14202999 (+)

Expression


Co-expression Network