LOC110535229 (LOC106579621)


Basic Information

Item Value
gene id LOC110535229
gene name LOC106579621
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 8938355 ~ 8968485 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620101.2
GTGTATGTTTGTACTGTTTCAGGTGATCAGTGGTGTGTGAGTTCTCACATGGcttgttctgagaacatgttttttCTCATTGGCCTCTTTATATCAGGTGTTCTGGCCTGCTTTGGTCAACGAGATTTGATCACCACAATGCCAGATAGACTGGATGTACTGACTGGCTCCTGTGTGCAAATCCCATGTTCATTTGATATTCCTGACCAAAATAAGTATACATTTAGGAGCACAATACTAACCTCTGGAGTGTGGATAAAAGAAATCCCGTACTTTGATCTACATCCGGACAATGTGATATTTAACAGTAGTAAGATGGTCAACAGATATCAAGGGAAGATAACTGGAAACATGTCCCAGAAGAACTGCACCACAGTCTTCTTCAATGTAACCACCAATTACACTAATAAATACTTCCTCAGGATTGAGAGGCAACCATTCCTTGCAACAGACATTAGAAAGTCTGTTAATATCGTTGTCAGGGATTTTCCTTCCAGTCCCATCATTACTGTCTCAGGTGAGGTGAAGGATGGGACCCCTGTCAGCTTGAACTGCTCTGCTGTCGCTCCCTGTCCCAAACAcccccctgagctgacatggaCTCTCCCAACACAGTTCACACCTGAGAACCAACTGCAGGAGAATTCAGACCAAACCAAATCAGTTCTCTCCACGGTGACCTTCACTCCGTCATACCTTCATCATGAGAAGAACATCACTTGTACTGCAGTCTACCCAGTAGGGACAAGCAACAATACAGCTGAACATAACATGATGCTTAACGTTTCATtctctcctaaggacacattggcctccatcagtcCAGCTGATCCAGTATTAGTGGGCACTTGTGTTAATCTGACCTGCAGCAGTACAGCCAACCCTCCTGTGACAAACTTCACCTGGTTCAAGATCAGTGGAGATAAACCAATACAGGTTGCGTCTGGACACAGTTACTCCCTCATTGTGACAGTTGGTGATGGAGGATTGTACTTCTGTGAAGCAAGAAATAGTCACGGCTGTGGGAAGTCAAAGGAAGTGCAGCTGGCTATTAAAGGGCATGAAGAGCCTGTTAACCCAAAGGTTTTTGAGATTGTAGGAAAAACCTTGGGGTTGATTTTCCTTTTCAGCCTGATCGTATTCTTTGCATGGAGAAGGAGAACATCTAGACTCCCCAGTGGGTTTGACATGACAGACCGTTCACAGGGACTGGTGGGAATGAACTCCCCGGTTGGGACAGTGTGCTCTAACCAGGCCACGGTCGGTAGAGGGAACCAAGAACCACCACTTAACAACCTAGATGGTCTTTAAGCACAAGTCAATCAGAGGTGCATTTTATGTATTTTTCCAATGGGTATTAAGTCTTATTATGAACAGTATTGTCATTGTGTATTAGTTTTCTGTGGATATTTTTGTTACATTTATAATTTTGTGCTCTTTGATTATCTGTATATTTGTAAAATTTGCTGGGATGAAAAGTGTTTAACTGttactatagtgttgatatgatgATGCAGGCTACTCTTTATtttagaccatttattttgagtGTTGAGTTCACAGAGCATCTGTTTAATGGGTTCCAGTATAGAGGAACTGCTGAGTTCAACTAGCCTACTGAAGGCAGTTTAAGACCATATAAAGTCAATGATGACTGAGGAGAGAAGACACAGTTAGTTGGAGAGACAGTGGTCTGATACAAGACAGGAAGTTGGTGCAGTAAGTCTACATGATGGCACAATGGTGTTAACGTTTACAAGTCACTGTTTATCTTCATCTTTTGTGCAGTTCCCAGAAAAACAATGTTATCTACTTTCATCTATTTAGAAGTTATTGCGTCAGCTTTTATGTTGAGTGTTACATTGAATAAATAATTGAGACTGAATTTATTAAGGTTGTTTATTAATTGCCCTGTCATTAAAACCTTTACATTCAATTCCCATGAAATATTTGTCTTATTGGTCCA
>XM_021620102.2
GTGTATGTTTGTACTGTTTCAGGTGATCAGTGGTGTGTGAGTTCTCACATGGcttgttctgagaacatgttttttCTCATTGGCCTCTTTATATCAGGTGTTCTGGCCTGCTTTGGTCAACGAGATTTGATCACCACAATGCCAGATAGACTGGATGTACTGACTGGCTCCTGTGTGCAAATCCCATGTTCATTTGATATTCCTGACCAAAATAAGTATACATTTAGGAGCACAATACTAACCTCTGGAGTGTGGATAAAAGAAATCCCGTACTTTGATCTACATCCGGACAATGTGATATTTAACAGTAGTAAGATGGTCAACAGATATCAAGGGAAGATAACTGGAAACATGTCCCAGAAGAACTGCACCACAGTCTTCTTCAATGTAACCACCAATTACACTAATAAATACTTCCTCAGGATTGAGAGGCAACCATTCCTTGCAACAGACATTAGAAAGTCTGTTAATATCGTTGTCAGGGATTTTCCTTCCAGTCCCATCATTACTGTCTCAGGTGAGGTGAAGGATGGGACCCCTGTCAGCTTGAACTGCTCTGCTGTCGCTCCCTGTCCCAAACAcccccctgagctgacatggaCTCTCCCAACACAGTTCACACCTGAGAACCAACTGCAGGAGAATTCAGACCAAACCAAATCAGTTCTCTCCACGGTGACCTTCACTCCGTCATACCTTCATCATGAGAAGAACATCACTTGTACTGCAGTCTACCCAGTAGGGACAAGCAACAATACAGCTGAACATAACATGATGCTTAACGTTTCATtctctcctaaggacacattggcctccatcagtcCAGCTGATCCAGTATTAGTGGGCACTTGTGTTAATCTGACCTGCAGCAGTACAGCCAACCCTCCTGTGACAAACTTCACCTGGTTCAAGATCAGTGGAGATAAACCAATACAGGTTGCGTCTGGACACAGTTACTCCCTCATTGTGACAGTTGGTGATGGAGGATTGTACTTCTGTGAAGCAAGAAATAGTCACGGCTGTGGGAAGTCAAAGGAAGTGCAGCTGGCTATTAAAGGGCATGAAGAGCCTGTTAACCCAAAGGTTTTTGAGATTGTAGGAAAAACCTTGGGGTTGATTTTCCTTTTCAGCCTGATCGTATTCTTTGCATGGAGAAGGAGAACATCTAGACTCCCCAGTGGGTTTGACATGACAGACCGTTCACAGGGACTGAACTCCCCGGTTGGGACAGTGTGCTCTAACCAGGCCACGGTCGGTAGAGGGAACCAAGAACCACCACTTAACAACCTAGATGGTCTTTAAGCACAAGTCAATCAGAGGTGCATTTTATGTATTTTTCCAATGGGTATTAAGTCTTATTATGAACAGTATTGTCATTGTGTATTAGTTTTCTGTGGATATTTTTGTTACATTTATAATTTTGTGCTCTTTGATTATCTGTATATTTGTAAAATTTGCTGGGATGAAAAGTGTTTAACTGttactatagtgttgatatgatgATGCAGGCTACTCTTTATtttagaccatttattttgagtGTTGAGTTCACAGAGCATCTGTTTAATGGGTTCCAGTATAGAGGAACTGCTGAGTTCAACTAGCCTACTGAAGGCAGTTTAAGACCATATAAAGTCAATGATGACTGAGGAGAGAAGACACAGTTAGTTGGAGAGACAGTGGTCTGATACAAGACAGGAAGTTGGTGCAGTAAGTCTACATGATGGCACAATGGTGTTAACGTTTACAAGTCACTGTTTATCTTCATCTTTTGTGCAGTTCCCAGAAAAACAATGTTATCTACTTTCATCTATTTAGAAGTTATTGCGTCAGCTTTTATGTTGAGTGTTACATTGAATAAATAATTGAGACTGAATTTATTAAGGTTGTTTATTAATTGCCCTGTCATTAAAACCTTTACATTCAATTCCCATGAAATATTTGTCTTATTGGTCCAACATTTAACATCTCATTAAAATGGATTctattg
>XM_036934770.1
GTGTATGTTTGTACTGTTTCAGGTGATCAGTGGTGTGTGAGTTCTCACATGGcttgttctgagaacatgttttttCTCATTGGCCTCTTTATATCAGGTGATCAGTGGTGTGTGAGTTCTCACATGGCTTGTCCTGAGAACATGTTTTTTCTCATTGGCCTCTTTATATCAGGTGTTTTGGCCTGTTTTGGTCAACGAGATTTGATCACCACAATGCCAGATAGAATGGATGTACTGACTGGCTCCTGTGTGCAAATCCCATGTTCATTTGATGTTCCTGACCAAAAAAAGAATATATTTAAAGCCACAATACCAACCTTTGGAGTGTGGATAAAAACATGTCCAGATGTTCATCAGTCTCCTGGAAACGTGATTTTTCACAGTAATGGGAATGTCAATATATATCAAGGGAAGATAACTGGAAACATGTCCCAGAAGAACTGCACCACAGTCTTCTTCAATGTAACCACCAGTTACTCTGATAAATACTACTTCAGGATTGACGGTCAAGCATACCGTGCAACAGATCCTGATAAGTCTGTTGAAATAGTTGTCAGGGATTTTCCTTCCAGTCCCATCATTACTGTCTCAGGTGAGGTGAAGGACGGGAACCCTGTCAGCTTGAACTGCTCTGCTGTCGCTCCCTGTCCAGAACacccccccgagctgacatggacTCTCCCAACACAGTTTACATCTGACAACCAACTGCAGGAGAATTCAGACCAAACCAATTCAGTTCTCTCCACGGTGACCTTCACTCCATCATATCTTCATCATGAGAAGAACATCACTTGTACTGCAGTCTACCCAGTAGGGACAAGCAACAAGACAGCTGAACATAACATGATGCTTAACGTTTCATtctctcctaaGGACACCTCGGCCTCCATCAGTCCGGCTGATCCAGTATCTGTGGGCAGCTGTGTTAATCTGACCTGCAGCAGTACAGCCAACCCTCCTGTGACAAACTTCACCTGGTTCCAGATCAGTGGAGATAAACCAACACAGGTAGCATCTGGACAGAGTTACACCCTCAATGTGACTGTAGATGGAGGACTGTACTTCTGTGAAGCAAGAAATAGTCACGGCTGTGGGAAGTCAAAGGAAGTGCAGCTGGCTATTAAAGGGTCAGGAGAGCATGTTAACCCAACGGTTTTTGGGGTTGCAGCAGGAACTCTGGGGGCATTTTTGCTTATCAGCCTGATCAGTCTTTTTGTATGGAGGAGAAACTCGAGGCTCCACGATGGACTTGAAAGGACAGACAGTCCACAGGGACAGAACTCCCCGGTTGGGACAGTGTGTACTAACCAGGCCACAgccagagaggaaccagaggaACCTGCAGAAGACCAGCCTGAAGAGATCCACTACGGTGACATAGACTTCTCCAAACTACAGACCAAAGGGACCCCAGCTGCAGCCCAGGACAGGGTCCAGGGACAGGAGAGTGAGTACGCTGAAGTCAACGTGACTGGGAGAGGGGCTCAGGAACCACCACTTAACTACCTAGATGGGCTTTATGCACAAGTCAATAAAAGAGGTGCATGTTAATTATTTTTCCAATGTGTATTAAGTGTTTTTATGTACAGTATTGTCATTGTGTTTCTTGTTTCATGTTGGTACTTCTGTTGCATTAATAATTGTGTGCTCTTTGATTATCTGCATATTTGTAACATTTGCTGGGGGAAAAGTGTTTAACTGttactatagtgttgatatgatgATGCAGGCTACTCTTTATtttagaccatttattttgagtGTTGAGTTCACAGAGCATCTGTTTAATGGGTTCCAGTATAGAGGAACTGCTGAGTTCAACTAGATCACTGAAGGCAGTTTAAGACCATATAAAGTCAATgatgacagaggagagaagacacaATTAGTTGGAGAGACAGTGGTCTGATACAAGACAGGAAGTTGGTGCAGTAAGTCGACAAGATGGCAGAATGGTGTTAACATCTACTAGTCACTGTTTATCTTCATCTTTTGTGCAGTTGCCAGAATAACAATTTTATCTATTTTCAGTGTATATCTATTTAGAATTTATAGTTTCAGTTTTTATGTTGAGTGTTAAACAACATAATCAATTGAGGCTGAATTTAAGGTTGTTTATTAATTGCACTGCAATAAAAACCTTTACATT
>XM_036934771.1
AGATATGCCACATGAATTTCATCACTTTAGTTAGTCAGACCTCACTATGTGTGTGACAGTTTCTGCTGTAGACAGTTTACGTTACCGTCTAAGGTGATCAGTGGTGTGTGAGTTCTCACATGGCTTGTCCTGAGAACATGTTTTTTCTCATTGGCCTCTTTATATCAGGTGTTTTGGCCTGTTTTGGTCAACGAGATTTGATCACCACAATGCCAGATAGAATGGATGTACTGACTGGCTCCTGTGTGCAAATCCCATGTTCATTTGATGTTCCTGACCAAAAAAAGAATATATTTAAAGCCACAATACCAACCTTTGGAGTGTGGATAAAAACATGTCCAGATGTTCATCAGTCTCCTGGAAACGTGATTTTTCACAGTAATGGGAATGTCAATATATATCAAGGGAAGATAACTGGAAACATGTCCCAGAAGAACTGCACCACAGTCTTCTTCAATGTAACCACCAGTTACTCTGATAAATACTACTTCAGGATTGACGGTCAAGCATACCGTGCAACAGATCCTGATAAGTCTGTTGAAATAGTTGTCAGGGATTTTCCTTCCAGTCCCATCATTACTGTCTCAGGTGAGGTGAAGGACGGGAACCCTGTCAGCTTGAACTGCTCTGCTGTCGCTCCCTGTCCAGAACacccccccgagctgacatggacTCTCCCAACACAGTTTACATCTGACAACCAACTGCAGGAGAATTCAGACCAAACCAATTCAGTTCTCTCCACGGTGACCTTCACTCCATCATATCTTCATCATGAGAAGAACATCACTTGTACTGCAGTCTACCCAGTAGGGACAAGCAACAAGACAGCTGAACATAACATGATGCTTAACGTTTCATtctctcctaaGGACACCTCGGCCTCCATCAGTCCGGCTGATCCAGTATCTGTGGGCAGCTGTGTTAATCTGACCTGCAGCAGTACAGCCAACCCTCCTGTGACAAACTTCACCTGGTTCCAGATCAGTGGAGATAAACCAACACAGGTAGCATCTGGACAGAGTTACACCCTCAATGTGACTGTAGATGGAGGACTGTACTTCTGTGAAGCAAGAAATAGTCACGGCTGTGGGAAGTCAAAGGAAGTGCAGCTGGCTATTAAAGGGTCAGGAGAGCATGTTAACCCAACGGTTTTTGGGGTTGCAGCAGGAACTCTGGGGGCATTTTTGCTTATCAGCCTGATCAGTCTTTTTGTATGGAGGAGAAACTCGAGGCTCCACGATGGACTTGAAAGGACAGACAGTCCACAGGGACAGAACTCCCCGGTTGGGACAGTGTGTACTAACCAGGCCACAgccagagaggaaccagaggaACCTGCAGAAGACCAGCCTGAAGAGATCCACTACGGTGACATAGACTTCTCCAAACTACAGACCAAAGGGACCCCAGCTGCAGCCCAGGACAGGGTCCAGGGACAGGAGAGTGAGTACGCTGAAGTCAACGTGACTGGGAGAGGGGCTCAGGAACCACCACTTAACTACCTAGATGGGCTTTATGCACAAGTCAATAAAAGAGGTGCATGTTAATTATTTTTCCAATGTGTATTAAGTGTTTTTATGTACAGTATTGTCATTGTGTTTCTTGTTTCATGTTGGTACTTCTGTTGCATTAATAATTGTGTGCTCTTTGATTATCTGCATATTTGTAACATTTGCTGGGGGAAAAGTGTTTAACTGttactatagtgttgatatgatgATGCAGGCTACTCTTTATtttagaccatttattttgagtGTTGAGTTCACAGAGCATCTGTTTAATGGGTTCCAGTATAGAGGAACTGCTGAGTTCAACTAGATCACTGAAGGCAGTTTAAGACCATATAAAGTCAATgatgacagaggagagaagacacaATTAGTTGGAGAGACAGTGGTCTGATACAAGACAGGAAGTTGGTGCAGTAAGTCGACAAGATGGCAGAATGGTGTTAACATCTACTAGTCACTGTTTATCTTCATCTTTTGTGCAGTTGCCAGAATAACAATTTTATCTATTTTCAGTGTATATCTATTTAGAATTTATAGTTTCAGTTTTTATGTTGAGTGTTAAACAACATAATCAATTGAGGCTGAATTTAAGGTTGTTTATTAATTGCACTGCAATAAAAACCTTTACATT

Function

NR:

description
B-cell receptor CD22-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620101.2 False 1966 mRNA 0.41 7 8938355 8946588
XM_021620102.2 False 1990 mRNA 0.41 7 8938355 8946621
XM_036934770.1 False 2152 mRNA 0.43 8 8938355 8968485
XM_036934771.1 True 2148 mRNA 0.43 8 8962422 8968485

Neighbor

gene id symbol gene type direction distance location
LOC110535228 LOC106579619 coding upstream 5069 8889740 ~ 8933322 (+)
LOC118937299 NA coding upstream 12614 8921240 ~ 8925741 (+)
LOC100135908 LOC100135908 coding upstream 57641 8869576 ~ 8880714 (+)
LOC110535221 LOC106579618 coding upstream 78137 8857106 ~ 8860218 (+)
LOC118937463 NA coding upstream 82879 8845565 ~ 8855476 (+)
LOC118937300 NA coding downstream 4435 8972920 ~ 8976404 (+)
LOC110535237 LOC106579624 coding downstream 310440 9278925 ~ 9296959 (+)
LOC118937475 NA coding downstream 322242 9290727 ~ 9290864 (+)
LOC100305285 pdcd6 coding downstream 350547 9319032 ~ 9329583 (+)
LOC110535239 LOC106579629 coding downstream 388544 9357029 ~ 9405871 (+)
G940461 NA non-coding upstream 100521 8837611 ~ 8837834 (+)
G940437 NA non-coding upstream 134800 8803230 ~ 8803555 (+)
LOC110535219 NA non-coding upstream 136120 8799540 ~ 8802257 (+)
G940380 NA non-coding upstream 149442 8788498 ~ 8788913 (+)
G940520 NA non-coding downstream 61069 9029554 ~ 9106845 (+)
G940515 NA non-coding downstream 78299 9046784 ~ 9242084 (+)
G940526 NA non-coding downstream 80120 9048605 ~ 9073783 (+)
G940527 NA non-coding downstream 80380 9048865 ~ 9100838 (+)
G940529 NA non-coding downstream 94206 9062691 ~ 9198442 (+)
G940376 NA other upstream 285834 8651504 ~ 8652993 (+)
G940313 NA other upstream 397488 8532540 ~ 8540867 (+)
G940247 NA other upstream 498580 8439480 ~ 8439775 (+)
LOC110536544 LOC106590277 other upstream 556775 8379847 ~ 8497020 (+)
G941893 NA other downstream 1276624 10245109 ~ 10245506 (+)
G942702 NA other downstream 2142241 11110726 ~ 11111336 (+)
G944957 NA other downstream 4419065 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 5096063 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 5186869 14154784 ~ 14202999 (+)

Expression


Co-expression Network