LOC118937300


Basic Information

Item Value
gene id LOC118937300
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 8972920 ~ 8976404 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034544.1
CGTGACAGTGGTCAGCTATGCattgttttaattgtcttttcGGTTGTCCTACGTAGGCTTTTCCACATGAACATGTGATGAGATAGATTACTCCCTTTTCCTTGCAAGAGATGATACCCCTAACAGGGATGTTTCCacctgtatgtgggtgtctgaagGATGTTTTTGTAGTGCTATTGAACTGTGAGCATGAGTCACATTGGTATTTCCAACTTGTATTGTgtgtcaagagtgtctgagtgggctcatggggcaggtcagatctcacTAAGCCATCCTGGGTTGGTCCTTGAGGTGTGCAATTGTTGTGTCTGATTGCAGAATATGCCAGTGCTTCTTcaggattgctttcattttctctGAACACTTGGTGTACTTAGtgcaaaatatttgtttttcttctttggttTAGTTTTTAGCAATTCTTCTCGTGGTTTTTGAGATATTTCCATCGTTGCATCATCAATAGTTTTTTCCATGTAGCCTCTGATTTTGAAATTATTTGTCATTTTCTTAGCATTGCTGTCAAAATCTGAATGTTGGCCAcagattagtttaaccctgcataactggctgtatggtagaccattcctgaggggaaggggatgcataatATCTCCACGTAGCAGGGTATTGAGGTCTGTTGTGCTTTGTGTACAAGTCTGTATGTAATGCACCACTCTTTGATGATCCATAAGTCCAGGTAGTTTATATTTCTCTCAACAGTGAACAGTGAATTTGAGATATTCAGAGCTCTCGCTTAGCAGAGTTTGGAATTCATTTAGTTCCTGCTGACTTCCTTCCCAGAGCACAGACATCATCTATGTATCTCTTCCATGAGAGGATTTTAGAAAGTAGGGAGTGTCTCTGTTTTGTGAGTGTTTCCTCAAATTGTTCCACATACAGGTTCACATAGTTGGGGGCAAaggaaaataggaaaaataaaaaaCTCTGACTCAAAGATGAAGCAGCTATTGGATAATACCAATTTAGTGAGTTTCAAGATGCAACCATTGGCTGGAGAAACGGTAGGGTCTCTCTACTGAAGGAAGTGTTGTAGGTCACAAAATATTATTTAAAAGTTTGCATTaaagtgtctgtaatagaatatacTTGTCTAAAACGAatatagacattaataaatgcatttctatagcttcctaCATCTGTTTTACACTGGAGGAGGAGTAACAAGATGGCTGTGCAGTTGCCTCCAAACAGAGGCCCCTGTTAGTCATCTAGGGTTAATACATATCATTGGACTGAACTGAAAATATATCAGAACCTCCCTGATGTTGACTTTCATGTTGCAGGTGTTCTGGCCTGTTTTGGTCGACGAGATTTGAATGCCACAATGCCAGATAGACTGGATGTACTGACTGGCTCCTGTGTGCAAATCCCATGTTCATTTGATATTCCTGACCAAAATAAGTATACATTTAACAGCACAATACTAACCTCTGGAGTGTGGATAAAAGAAATCCCGTACTTTGATCTACATCCGGACAGAGTGATATTTAACAGTAGTAAGATGGTCAACAGATATCAAGGGAAGATAACTGGAAACATGTCCCAGAAGAACTGCACCACAGTCTTCTTCAATATAACCACCAGTTACTCTGATAAATACTACCTCAGGATTGAGAGTCAACCATTCCGTGCAACAGACATTAGAAAGTCTGTTAATATCGTTGTCAGGGGTAAGAGACAATTCAACTTTTAACCAACTATTTTTTCCAGTTTAGATTCCTTTCATCAAAGATAAGAGTAGAACAAGTGGACAGTTTAACTGTTAGTGTAAAATAGATTTATCTACAATGTATTACAGATTTTCCTTCCAGTCCCATCATTACTGTCTCAGGTGAGGTGAAGGATGGGACCCCTGTCAGCTTGAACTGCTCTGCTGTCGCTCCCTGTCCCGAACAcccccctgagctgacatggaCTCTCCCAACATAGTTCACACCTGAGAACCAACTGCAGGAGAATCCAGACCAAACTAAATCAGTTCTCTCCACGGTGACCTTCACTCCGTCATACCTTCATCATGAGAAGAACATCACTTGTACCTCAGTATACCCAGTAGGGATAATCAACAAGAGAGCTGAACATAACATGGTGCTTAACGTTTCATtctctcctaaGGACACCTTGGCCTCCATCAGTCCAGCTGATCCAGTATTAGTGGGCAGCTGTGTTAATCTGACCTGCAGCAGTACAGCCAACCCTCCTGTGACAACCTTCACCTTGTTCCAGATCTGTGGAGATAAACAAATACAGGTAGCATCTGGACAGAGCTACACCCTCAATGTGACTGCTGGTGATGGAGGACTGTACTACTGTGAAGGAAGAAATAGTCACGGCTGTGGGAAGTCGAATGAAGTGCAGCTGGCTATAAAAGGGCATGAAGAGCCTGTTAACCCAAAGGTTTTTGAGATTGTAGGAAAAACCTTGGGGTTGATTttccttttca

Function

NR:

description
B-cell receptor CD22-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034544.1 True 2473 mRNA 0.41 3 8972920 8976404

Neighbor

gene id symbol gene type direction distance location
LOC110535229 LOC106579621 coding upstream 4435 8938355 ~ 8968485 (+)
LOC110535228 LOC106579619 coding upstream 39634 8889740 ~ 8933322 (+)
LOC118937299 NA coding upstream 47179 8921240 ~ 8925741 (+)
LOC100135908 LOC100135908 coding upstream 92206 8869576 ~ 8880714 (+)
LOC110535221 LOC106579618 coding upstream 112702 8857106 ~ 8860218 (+)
LOC110535237 LOC106579624 coding downstream 302521 9278925 ~ 9296959 (+)
LOC118937475 NA coding downstream 314323 9290727 ~ 9290864 (+)
LOC100305285 pdcd6 coding downstream 342628 9319032 ~ 9329583 (+)
LOC110535239 LOC106579629 coding downstream 380625 9357029 ~ 9405871 (+)
LOC118937311 LOC106579630 coding downstream 434474 9410878 ~ 9412277 (+)
G940461 NA non-coding upstream 135086 8837611 ~ 8837834 (+)
G940437 NA non-coding upstream 169365 8803230 ~ 8803555 (+)
LOC110535219 NA non-coding upstream 170685 8799540 ~ 8802257 (+)
G940380 NA non-coding upstream 184007 8788498 ~ 8788913 (+)
G940520 NA non-coding downstream 53150 9029554 ~ 9106845 (+)
G940515 NA non-coding downstream 70380 9046784 ~ 9242084 (+)
G940526 NA non-coding downstream 72201 9048605 ~ 9073783 (+)
G940527 NA non-coding downstream 72461 9048865 ~ 9100838 (+)
G940529 NA non-coding downstream 86287 9062691 ~ 9198442 (+)
LOC118937463 NA other upstream 117483 8845565 ~ 8855476 (+)
G940376 NA other upstream 320399 8651504 ~ 8652993 (+)
G940313 NA other upstream 432053 8532540 ~ 8540867 (+)
G940247 NA other upstream 533145 8439480 ~ 8439775 (+)
LOC110536544 LOC106590277 other upstream 591340 8379847 ~ 8497020 (+)
G941893 NA other downstream 1268705 10245109 ~ 10245506 (+)
G942702 NA other downstream 2134322 11110726 ~ 11111336 (+)
G944957 NA other downstream 4411146 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 5088144 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 5178950 14154784 ~ 14202999 (+)

Expression


Co-expression Network