LOC110535237 (LOC106579624)


Basic Information

Item Value
gene id LOC110535237
gene name LOC106579624
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 9278925 ~ 9296959 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934807.1
CCATGCAGTCTGACTAAAGGTTAAGAGTGGACACTTTTGGCGGTTCACAAGCACAAACATGTAGTTAGCAAGATGGCGTCGGACACTAACACCTGGACCTTGTTTGAGAGGGAGATCGCAACTTTCGCCAGAGACCCAGCAAATGCCACCGCCCAGCTGAAGCTGGCTTTTAAAGACCCAGCCATCATCCCAGCGTTGTGTGCTGTCATGACCGGGTCCCAGAACTCACAGatccgccagtcagctgCAGTAATGTTGCGGATGAGAGTGAAGAAGCATTGGAAGAAGATTGGCCCTGATCACAGAGAGAGTTTGAAAGCAGTGGTCCTGCAAGCCTTCCAGCAGGAGACAGAACACACAGTACGCCACTCCCTCTCGCAGCTCAGCGCAGTGATGGTCAAACACGAGACGCCAGACCGCTGGCCTGCTCTATTCACACTCCTCAACCAGTCCACCAAGAGCAACAACCCAATGGACAGACAGGTGGGTCTACTCTTGCTCAGCAAAGTGGTGGAGTCCAATCCGGAGCCCTTCAAGCCCCACTATCGCCAACTGCTGCAGCTGTTTGGCACCGTGCTGCAAGACCTGGACAACCCCACAGCCATGTACTACAGCATCCTCACCCTCACCGCTATGACTGCCTACACTGGCACAGAAGAGATGAACCTAATGCGCTCCCTCATCCCAACACTGATCATTGCTCTCAGACACCTCATCAAGGCAGACCAGGATCAGGCCAGTGAGGCCATGGAGGTGTTCGATGAGCTGATGGAGAGTGAGGTGTCCATCATGGTCCCACACATCACTGAAATTGTCCACTTCTGCTTGGAGgTCAGTGCAGACACTACACTGACTGACTCCCTGCGTGTGAAGGCTCTGTCCTGCATTGCTTTTCTCATTCGTCTCAAGAGCAAGaCAGTGTTAAAGCAGAAGCTGCTCAATCCCATCCTGCAGACGGTGTTCCCCGTGCTTAGTGCAGCGCCACCACCTGGGGAGGAGGACCCTGAGGACGAGGAGAACAGCAATGAGGACGACACTGACAACGAGAGTCCCAAACACTTTGCTGCTCAGGTTATTGACACCATGGCTCTTCACATGCCCCCTGAGAAACTATTCCACCAACTGATGCCGCTGACTCAAGCATGTCTGGCCAGTGATAACCCCTATGAGAGGAAAGCTGGCCTGATGTGTCTGGCAGTGCTGGCCGAGGGCTGTGCCGACCACATAAGGACCAAGATGCTGTCGTCCATGTTGCAGACGGTGTGCCAGAGTCTGTCAGACAGTAACCAAGTGGTCCGCAGCGCCGGCCTCTTTGCCCTGGGACAGTTTTCTGAGCACCTGCAGCCTGAGGTCAGTAAGTACTGTGCTGAGCTGATGCCACTGTTGCTGGGCTACATGTCTGCTCTGAACCAGGCCAAGATCGGACACGTCACCAAGGCCTTCTACGCCCTGGAGAACTTCCTGGAAAACCTGGGTTCAGAGATTGAGCCCTACCTGCCCACCCTGATGGAGACCATGTCTGCCCTCAGCAACGCAGAGAACCTGAAGCTCAAAGAGCTGGCTGTCAGTGCTATAGGAGCTATAGCCAATGCAGCCAAAGAGAAGCTAGTTCCTTACTTCCTGCCTGTCATTGAGAGTCTGAAGGGCTTCCTCACTGACACCAGGGATGAGATGAGGTCTCTGCAGACACAGGCTCTGGATACTCTGTCAGTGCTGGCCCGCACCATAGGTAAGGAGGTGTTCAGCCCCCTGGCTGCAGAGTGTGTTCAGCTGGGACTCAATCTCACCAACGCTATCGATGACCCAGACCTGCGCCGCTGCACGTACAGCCTGTTTTCGGCTGTGTCCACAGTGAGTCCAGACTGTCTGAACCCACACCTCACTGCCATCACCACCATCATGCTTCTGTCTCTCAAGTCCACAGAGGGAGTCACGGCTCACCTTGAGGAGGACAAGACGTTTGTCCTGCTGGATGACGATGATGACGACGAGGCTCAGGGAGACACCATTTTGGACGAGGAGGGGACTGACAACGTGGACCCAGACATCGCCGGGTTCAGTGTAGAAAACGCCTACATTGATGAGAAGGAGGACACCTGTGACGCCCTGGGAGAGATTGCCTTCAACACCGGTGCTGCCTTCCAGCCTTTCCTGGAGTCCAGCTTTCAGCAGGTCTATGAGCTGCGTGATTTTCCCCACGAGGATGTGCGCAGGGCTGCCTTCGTGGCCATGGGCCAGTTCTGCCGAGCTCAGCACAAAGTGTGGCAGGAGAATCCCACTGAGGCCGACCACCAGgCCCTGCAGAAGCTGCTGGGGGTGGTGCTGCCAAGCTTCCTGGAGGCGGTCCATAGTGAGCGTGAGCGCCATGTGGTGATGGGCGTGCTGGAGGCCATGAACGCTGTGCTGAAGGCCTGCCAGGGGGAGGCACTGCAGAGCCCCGGGCGCCTGCAGGAGATCAGCCAGGCCATCCGAGACGTGCTCAAGAAGAGGACTGTCTGTCAGGACGGAGGAGGAGACGAGGCAGATGATGACGAGCAGCAGGCGGAGTATGATGCCATGCTGCAGGAGTTTGCCGGCGAGGGGATCCCCTTGCTAGCCTCTGCCGTCCCAGCGGAGACCTTCCAGCCCTATCTCAACGAGCTGCTGCCGCTCATCATGAACAAGGCTaaGTTGTCTTACACAGTGGCCGACCGTTCATTCTCCGTGGGCACGCTCGGAGAGATCCTGCAATCCCTCGTCAACGTATCTGGGGGCAGGGCCTGTGCCGGCAAACTGTCCAATAAGCTGCTGCCTGTCCTAGTGGCTGGGGTGAGAGACAGCGACAGTGAGGTTCGCAACAACAGCGTGTTCGCACTGGGAGCACTGGCCCAGGCTGCTGGACCCCTCGTCGCACAAGACTACCCCATGATGCTGTCCCTCTTCTCCAACCTGCTGTCCAAAGAACAGGACAGGAGGGTGATTGACAACCTGTGTGCTGCCCTCTGCAGGATGATCATGAGCAACATGGAGGGTGTCCCTCTGGAACAGGTGTTCCCTGCCCTCCTGGCTCGCCTCCCTCTGAAGGAAGACATGGAGGAGAATAAGACTGTGTACAGCTGCTTGGCCATGCTCTACTCTCAGAACCCTGCACTGGTCCTGAGTCAAATTAAGCCAATAGTATCTGCTTCCAGCCACGTCCTGGGAACCAAGGATCTTGACACAGAAACCCAGAACACACTGGTCATGCTGCTCCGAGACGTCGCTCAGCGTCACTCCAAGGAATTCGAGGTCGCCATGAAGTCACTTCCCGCTGAGCAGAAGATGAAGCTGACAGGGGCCGTTAGCCAATCCTAGCACACCACGTCAACCAGCTATTCCATGCCAGTCAAAGCCAGCGAATTGTAGGATTTGTGTTACTACATATGACAAGTGGGACAGTAGTTGGAACACGTTCAAATTGGGTAAACCTGCAAACTCCTGCACTTGAACCATTCTACTATTAGGATTCTATCATTATTCAGAGGTTCTGTTCATAGTTCTCACTTTTTAATTTATATTGTCTGTGCTTTTTAGAAGTTATTTCATTTTTTGTGTGTTACTagtatgtttttgtttgtttatttttagtCTGATACTGGTTTAACCTTGTTGTAACTGAGAACCTCCATCTATTTTCTGCTGTCCCCCTTTTACCACACATTTGTTCAACTGGCTTGACTAGTATTGAGTGTGAAGCAATGAACTGAATTCATGATAAATTCCTTTTTCTCAGACTT
>XM_036934809.1
CTGTTCACGTGGAACACTCCCTGAGTTGGTTCTGTGCCGCGTGGCATTGTGATAGAACGAACCAGACTGGGATTCGAAACCCAACCGTCGCCTATTTTGGGGTTCCTATAAATCGGCGGAGGAGAAAATGTATCCATAGATATGTTTTGATACGCTAATAGCTAGCAGAGTTGTTAACTAGCTACAGATAATTTGTTGACATATTAGTCGAGTTAGCAAACTGGCTATACTTTGACCATTCAGACCGTTCTCCCAGTTTATGCCTGTCAAAGGGTCATGTTTTAGCGTGACAGTTTGCGCATCATTTTGAATAATAACATCTCAGAAACACTGAGATTTTGGAAGAGCCAAGATGTCTGGGGAACTAGAGCAGATTCTCTTACAGCTCACGCAGCCTGACAATGCGATTATTCAGCAGGCCACCGCCCAGCTGAAGCTGGCTTTTAAAGACCCAGCCATCATCCCAGCGTTGTGTGCTGTCATGACCGGGTCCCAGAACTCACAGatccgccagtcagctgCAGTAATGTTGCGGATGAGAGTGAAGAAGCATTGGAAGAAGATTGGCCCTGATCACAGAGAGAGTTTGAAAGCAGTGGTCCTGCAAGCCTTCCAGCAGGAGACAGAACACACAGTACGCCACTCCCTCTCGCAGCTCAGCGCAGTGATGGTCAAACACGAGACGCCAGACCGCTGGCCTGCTCTATTCACACTCCTCAACCAGTCCACCAAGAGCAACAACCCAATGGACAGACAGGTGGGTCTACTCTTGCTCAGCAAAGTGGTGGAGTCCAATCCGGAGCCCTTCAAGCCCCACTATCGCCAACTGCTGCAGCTGTTTGGCACCGTGCTGCAAGACCTGGACAACCCCACAGCCATGTACTACAGCATCCTCACCCTCACCGCTATGACTGCCTACACTGGCACAGAAGAGATGAACCTAATGCGCTCCCTCATCCCAACACTGATCATTGCTCTCAGACACCTCATCAAGGCAGACCAGGATCAGGCCAGTGAGGCCATGGAGGTGTTCGATGAGCTGATGGAGAGTGAGGTGTCCATCATGGTCCCACACATCACTGAAATTGTCCACTTCTGCTTGGAGgTCAGTGCAGACACTACACTGACTGACTCCCTGCGTGTGAAGGCTCTGTCCTGCATTGCTTTTCTCATTCGTCTCAAGAGCAAGaCAGTGTTAAAGCAGAAGCTGCTCAATCCCATCCTGCAGACGGTGTTCCCCGTGCTTAGTGCAGCGCCACCACCTGGGGAGGAGGACCCTGAGGACGAGGAGAACAGCAATGAGGACGACACTGACAACGAGAGTCCCAAACACTTTGCTGCTCAGGTTATTGACACCATGGCTCTTCACATGCCCCCTGAGAAACTATTCCACCAACTGATGCCGCTGACTCAAGCATGTCTGGCCAGTGATAACCCCTATGAGAGGAAAGCTGGCCTGATGTGTCTGGCAGTGCTGGCCGAGGGCTGTGCCGACCACATAAGGACCAAGATGCTGTCGTCCATGTTGCAGACGGTGTGCCAGAGTCTGTCAGACAGTAACCAAGTGGTCCGCAGCGCCGGCCTCTTTGCCCTGGGACAGTTTTCTGAGCACCTGCAGCCTGAGGTCAGTAAGTACTGTGCTGAGCTGATGCCACTGTTGCTGGGCTACATGTCTGCTCTGAACCAGGCCAAGATCGGACACGTCACCAAGGCCTTCTACGCCCTGGAGAACTTCCTGGAAAACCTGGGTTCAGAGATTGAGCCCTACCTGCCCACCCTGATGGAGACCATGTCTGCCCTCAGCAACGCAGAGAACCTGAAGCTCAAAGAGCTGGCTGTCAGTGCTATAGGAGCTATAGCCAATGCAGCCAAAGAGAAGCTAGTTCCTTACTTCCTGCCTGTCATTGAGAGTCTGAAGGGCTTCCTCACTGACACCAGGGATGAGATGAGGTCTCTGCAGACACAGGCTCTGGATACTCTGTCAGTGCTGGCCCGCACCATAGGTAAGGAGGTGTTCAGCCCCCTGGCTGCAGAGTGTGTTCAGCTGGGACTCAATCTCACCAACGCTATCGATGACCCAGACCTGCGCCGCTGCACGTACAGCCTGTTTTCGGCTGTGTCCACAGTGAGTCCAGACTGTCTGAACCCACACCTCACTGCCATCACCACCATCATGCTTCTGTCTCTCAAGTCCACAGAGGGAGTCACGGCTCACCTTGAGGAGGACAAGACGTTTGTCCTGCTGGATGACGATGATGACGACGAGGCTCAGGGAGACACCATTTTGGACGAGGAGGGGACTGACAACGTGGACCCAGACATCGCCGGGTTCAGTGTAGAAAACGCCTACATTGATGAGAAGGAGGACACCTGTGACGCCCTGGGAGAGATTGCCTTCAACACCGGTGCTGCCTTCCAGCCTTTCCTGGAGTCCAGCTTTCAGCAGGTCTATGAGCTGCGTGATTTTCCCCACGAGGATGTGCGCAGGGCTGCCTTCGTGGCCATGGGCCAGTTCTGCCGAGCTCAGCACAAAGTGTGGCAGGAGAATCCCACTGAGGCCGACCACCAGgCCCTGCAGAAGCTGCTGGGGGTGGTGCTGCCAAGCTTCCTGGAGGCGGTCCATAGTGAGCGTGAGCGCCATGTGGTGATGGGCGTGCTGGAGGCCATGAACGCTGTGCTGAAGGCCTGCCAGGGGGAGGCACTGCAGAGCCCCGGGCGCCTGCAGGAGATCAGCCAGGCCATCCGAGACGTGCTCAAGAAGAGGACTGTCTGTCAGGACGGAGGAGGAGACGAGGCAGATGATGACGAGCAGCAGGCGGAGTATGATGCCATGCTGCAGGAGTTTGCCGGCGAGGGGATCCCCTTGCTAGCCTCTGCCGTCCCAGCGGAGACCTTCCAGCCCTATCTCAACGAGCTGCTGCCGCTCATCATGAACAAGGCTaaGTTGTCTTACACAGTGGCCGACCGTTCATTCTCCGTGGGCACGCTCGGAGAGATCCTGCAATCCCTCGTCAACGTATCTGGGGGCAGGGCCTGTGCCGGCAAACTGTCCAATAAGCTGCTGCCTGTCCTAGTGGCTGGGGTGAGAGACAGCGACAGTGAGGTTCGCAACAACAGCGTGTTCGCACTGGGAGCACTGGCCCAGGCTGCTGGACCCCTCGTCGCACAAGACTACCCCATGATGCTGTCCCTCTTCTCCAACCTGCTGTCCAAAGAACAGGACAGGAGGGTGATTGACAACCTGTGTGCTGCCCTCTGCAGGATGATCATGAGCAACATGGAGGGTGTCCCTCTGGAACAGGTGTTCCCTGCCCTCCTGGCTCGCCTCCCTCTGAAGGAAGACATGGAGGAGAATAAGACTGTGTACAGCTGCTTGGCCATGCTCTACTCTCAGAACCCTGCACTGGTCCTGAGTCAAATTAAGCCAATAGTATCTGCTTCCAGCCACGTCCTGGGAACCAAGGATCTTGACACAGAAACCCAGAACACACTGGTCATGCTGCTCCGAGACGTCGCTCAGCGTCACTCCAAGGAATTCGAGGTCGCCATGAAGTCACTTCCCGCTGAGCAGAAGATGAAGCTGACAGGGGCCGTTAGCCAATCCTAGCACACCACGTCAACCAGCTATTCCATGCCAGTCAAAGCCAGCGAATTGTAGGATTTGTGTTACTACATATGACAAGTGGGACAGTAGTTGGAACACGTTCAAATTGGGTAAACCTGCAAACTCCTGCACTTGAACCATTCTACTATTAGGATTCTATCATTATTCAGAGGTTCTGTTCATAGTTCTCACTTTTTAATTTATATTGTCTGTGCTTTTTAGAAGTTATTTCATTTTTTGTGTGTTACTagtatgtttttgtttgtttatttttagtCTGATACTGGTTTAACCTTGTTGTAACTGAGAACCTCCATCTATTTTCTGCTGTCCCCCTTTTACCACACATTTGTTCAACTGGCTTGACTAGTATTGAGTGTGAAGCAATGAACTGAATTCATGATAAATTCCTTTTTCTCAGACTT

Function

NR:

description
PREDICTED: importin-4-like isoform X2

GO: NA

KEGG:

id description
K20221 IPO4, RANBP4; importin-4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934807.1 False 3755 mRNA 0.54 29 9278925 9296959
XM_036934809.1 True 4029 mRNA 0.53 29 9284416 9296959

Neighbor

gene id symbol gene type direction distance location
LOC118937300 NA coding upstream 302521 8972920 ~ 8976404 (+)
LOC110535229 LOC106579621 coding upstream 310440 8938355 ~ 8968485 (+)
LOC110535228 LOC106579619 coding upstream 345639 8889740 ~ 8933322 (+)
LOC118937299 NA coding upstream 353184 8921240 ~ 8925741 (+)
LOC100135908 LOC100135908 coding upstream 398211 8869576 ~ 8880714 (+)
LOC100305285 pdcd6 coding downstream 22073 9319032 ~ 9329583 (+)
LOC110535239 LOC106579629 coding downstream 60070 9357029 ~ 9405871 (+)
LOC118937311 LOC106579630 coding downstream 113919 9410878 ~ 9412277 (+)
LOC110535246 tm14c coding downstream 874890 10171849 ~ 10175528 (+)
LOC118937312 NA coding downstream 970305 10267264 ~ 10269419 (+)
G940579 NA non-coding upstream 7911 9270643 ~ 9271014 (+)
G940574 NA non-coding upstream 14273 9262749 ~ 9264652 (+)
G940573 NA non-coding upstream 17633 9260998 ~ 9261292 (+)
G940515 NA non-coding upstream 36841 9046784 ~ 9242084 (+)
G940529 NA non-coding upstream 80483 9062691 ~ 9198442 (+)
G940576 NA non-coding downstream 148 9297107 ~ 9342601 (+)
G940632 NA non-coding downstream 70092 9367051 ~ 9381784 (+)
G940618 NA non-coding downstream 109345 9406304 ~ 9407558 (+)
G940616 NA non-coding downstream 110866 9407825 ~ 9409672 (+)
LOC118937463 NA other upstream 423488 8845565 ~ 8855476 (+)
G940376 NA other upstream 626404 8651504 ~ 8652993 (+)
G940313 NA other upstream 738058 8532540 ~ 8540867 (+)
G940247 NA other upstream 839150 8439480 ~ 8439775 (+)
LOC110536544 LOC106590277 other upstream 897345 8379847 ~ 8497020 (+)
G941893 NA other downstream 948150 10245109 ~ 10245506 (+)
G942702 NA other downstream 1813767 11110726 ~ 11111336 (+)
G944957 NA other downstream 4090591 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 4767589 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 4858395 14154784 ~ 14202999 (+)

Expression


Co-expression Network