Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC100305285 |
| gene name | pdcd6 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048575.1 |
| NCBI id | CM023229.2 |
| chromosome length | 86280908 |
| location | 9319032 ~ 9329583 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| pdcd6 | Predicted to enable calcium ion binding activity. Is expressed in notochord; pectoral fin cartilage; and pharyngeal arch 3-7 skeleton. Orthologous to human PDCD6 (programmed cell death 6). |
| description |
|---|
| programmed cell death protein 6 |
| id | name | namespace |
|---|---|---|
| GO:0005509 | calcium ion binding | molecular_function |
| id | description |
|---|---|
| K23902 | PDCD6; programmed cell death protein 6 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| NM_001165190.1 | True | 1220 | mRNA | 0.43 | 6 | 9319032 | 9329583 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110535237 | LOC106579624 | coding | upstream | 22073 | 9278925 ~ 9296959 (+) |
| LOC118937475 | NA | coding | upstream | 28168 | 9290727 ~ 9290864 (+) |
| LOC118937300 | NA | coding | upstream | 342628 | 8972920 ~ 8976404 (+) |
| LOC110535229 | LOC106579621 | coding | upstream | 350547 | 8938355 ~ 8968485 (+) |
| LOC110535228 | LOC106579619 | coding | upstream | 385746 | 8889740 ~ 8933322 (+) |
| LOC110535239 | LOC106579629 | coding | downstream | 27446 | 9357029 ~ 9405871 (+) |
| LOC118937311 | LOC106579630 | coding | downstream | 81295 | 9410878 ~ 9412277 (+) |
| LOC110535246 | tm14c | coding | downstream | 842266 | 10171849 ~ 10175528 (+) |
| LOC118937312 | NA | coding | downstream | 937681 | 10267264 ~ 10269419 (+) |
| LOC110535248 | LOC106579638 | coding | downstream | 976302 | 10305885 ~ 10367679 (+) |
| G940586 | NA | non-coding | upstream | 37892 | 9280929 ~ 9281140 (+) |
| G940579 | NA | non-coding | upstream | 48018 | 9270643 ~ 9271014 (+) |
| G940574 | NA | non-coding | upstream | 54380 | 9262749 ~ 9264652 (+) |
| G940573 | NA | non-coding | upstream | 57740 | 9260998 ~ 9261292 (+) |
| G940516 | NA | non-coding | upstream | 171574 | 9070549 ~ 9147458 (+) |
| G940632 | NA | non-coding | downstream | 37468 | 9367051 ~ 9381784 (+) |
| G940618 | NA | non-coding | downstream | 76721 | 9406304 ~ 9407558 (+) |
| G940616 | NA | non-coding | downstream | 78242 | 9407825 ~ 9409672 (+) |
| G940620 | LOC106579628 | non-coding | downstream | 83606 | 9413189 ~ 9421918 (+) |
| LOC118937463 | NA | other | upstream | 463595 | 8845565 ~ 8855476 (+) |
| G940376 | NA | other | upstream | 666511 | 8651504 ~ 8652993 (+) |
| G940313 | NA | other | upstream | 778165 | 8532540 ~ 8540867 (+) |
| G940247 | NA | other | upstream | 879257 | 8439480 ~ 8439775 (+) |
| LOC110536544 | LOC106590277 | other | upstream | 937452 | 8379847 ~ 8497020 (+) |
| G941893 | NA | other | downstream | 915526 | 10245109 ~ 10245506 (+) |
| G942702 | NA | other | downstream | 1781143 | 11110726 ~ 11111336 (+) |
| G944957 | NA | other | downstream | 4057967 | 13387550 ~ 13394875 (+) |
| G946426 | ramp3 | other | downstream | 4734965 | 14064548 ~ 14065869 (+) |
| LOC110535304 | NA | other | downstream | 4825771 | 14154784 ~ 14202999 (+) |
