LOC110535239 (LOC106579629)


Basic Information

Item Value
gene id LOC110535239
gene name LOC106579629
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 9357029 ~ 9405871 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934811.1
CACACACGCGACAGATACACAGCTCAACCGGCGGAATTTAGGAAACTTCAAGTTAAGGGGTAATTTCTTCTACGCAACTTtggaaaatattttatttaagagttaaatacacacactaaagtAAAATGGTTTCTTTCAGAGtagtttttattattttaccagAAAACTTGGAATATAACGTTGACTTTTGACTGGGTCTGATTTGGACTTCCCGAAGCGCTCAGAAGTACATTTACAGCCGGGCTGTCAACTTGATGGAGACTTTTCAGAACCAGAAATAATGAATAGGCGTACcaattttacaaaaaaaaaaaaaatattggataCTATTGCATAATGCGTAAAGGATTTTCTATTACTTTTAAAGGAGCTACTTAAGCTTCTTTCAGTGAGAACAAGGAGCGCATTTGAAGACAGTTTTACGCGCAAAAGATTGACAATATATTGGAAACGGCAGGTCAGAGACAATCTGACTATAAACTGGACATACAATGACAAGCTGTTGGTTTGCCTTTGTGGGGTTGTGGTGGAGCGCATATTGCATGTTCCTTATTGCAGGTAGCAATTATTTATTCGATGGGAACAACGAGGTGCACCCGAGTTTCATTCACCGGCGGTTGCGGACACACgaaaagagagagatgcagaaggAGATCCTCTCCATCCTTGGACTTCCACACAGACCCAGACCGCATCTGTCACATGGAAAGTACAACTCCGCTCCGCTCTTCATGCTGGATCTTTACAATACGATATCCAGCGAGGAGAAAAACGAAGTGGAGGGCATGTTGGAACAGTACCAGTCCTTGTACACCACCCAAGGTCCCCGTTTAGCAAAACATCAGGAGAATGCCTTCCTAAATGACGCCGACATGGTGATGAGCTTTGTCAATCTGGTGGAGTATGACAGAGAGCTGTCGCCTCACAGAATGCACCACAAAGAGTTCAAGTTCAACCTGTCCCAGATCCCTGAGGGTGAGGCCGTCACCGCCTCCGAGTTACGCCTCTACAAGGAGTGTGCGAACCAAGTCGTCATCAACGAGACCCTCCTGCTCAGCGTCTACCAAGTGGTGCAGGAGCACCCCAACAGGGAGGCGGACCTGTTCTTGCTGGAGTCTCGCAGGCTGTGGGCAGCCGAGGAGGGCTGGCTGGAGTTTGACATCCTGGCCACCAGTAACTTGTGGGTGATGAGTCCTCACTACAACCTGGGCCTCCAGATCAGAGTGGAGACCAGCAGGGGGCGGAGCATCAGCTCCAAGGAGGCGGGACTAGTGGGGCGTGACGGAGGGCTGGAGAAGCAACCCTTCATGGTGGCCTTCTTTAAAGTCAGCGAGGTGCACATCCGCACCGCCCGCTCCACCAACAAGCGCAACAAGAACCGCAACCGCCCTACGCAGCCCCAGGAAGGAGGCTCCAGGGGCCCCAGCCCAGCAGATTACAACAGCAGTGACCATAACACAGCCTGTAGGAGACATGAGCTCTACGTCAGCTTCCGGGAGCTGGGCTGGCAGGACTGGATCATTGCACCTGAGGGCTACGCTGCCAACTACTGTGGTGGAGAGTGTGTCTTCCCCCTCAACGCCCATATGAATGCCACCAACCATGCCATTGTGCAGACACTGGTCCACCTCATGAACCCGGAGAACGTGCCCAAGCCCTGCTGCGCCGCCACCAAGCTGCACGCCATCTCCGTGCTCTACTTCGACGACAACTCCAACGTCATCCTGAAGAAGTACAAGAACATGGTGGTCAGGGCCTGTGGTTGCCACTGACGACCGCCAAACCGCCGCGTCGTCACGGTCACCTGACCGCGGCGCGGGCTGCAGCGGAGGCTGTATGAACACGACAGCCTGGGTCATACTCAGGGTGAGGGAGGAACTGATAAAGGAGCAGACATAATGTGCTGctttccactctctctcatcCAAGTGATGTTCAAATTCTCCGACGGCTACTGGCTTCATTACAGCAAAACAACTCGAAGACATAGGGGAATTGACTCAATGTTATCTCAGCGCGGGTAGCCAATCCCGTCAGATGTAGTCGAATGACACAGAAAACATGTAGAAATCTACATGGGGGAGACAGCATTAGCCtaactacagtgcattcagaaagtatccagacccctctactttttccacattttgttaccttacagccttattctaaatttgtTTTTATatctaatctacacacaataccctataatgatgAAGcga
>TU1072816
CCTCTATTACACACTATAACATATGATGTTACTGTGAACTACAGCCAGACACACTATAACACATGTTACTGTGAACTACAGCCAGACACACTATAACATATGTTACTGTGAACTACAGCCAGACACACTATAACACATGTTACTGTGAACTACAGCCAGACACACTATAACACATGTTACTGTGAACTACAGCCAGACACACTATAACATATGATGTTACTGTGAACTACAGCCAGACACACTATAACATATGATGTTACTGTGAACTACAGCCAGACACACTATAACACATGTTACTGTGAACTACAGCCAGACACACTATAACACACGTTACTGTGAACTACAGCCAGACACACTATAACACACGTTAGAGTAAACTACAGCCAGACACACTAAAACACACGTAACTGTGAACTAGAAGCCAGACACACTATAACACACGTTACTGTGACACGTTACAGCCAGACACACTATAACACATGTTATTGTGACACGTTACAGCCAGACACATATCATTCACTACCCAATCCGATATATGAGAGCGGAGGTGGATATGATTATGATTCAACCCTGACTTATCCTCCTAGTTCTTTCTTCCCATTTAGATTACAACAGCAGTGACCATAACACAGCCTGTAGGAGACATGAGCTCTACGTCAGCTTCCGGGAGCTGGGCTGGCAGGACTGGATCATTGCACCTGAGGGCTACGCTGCCAACTACTGTGGTGGAGAGTGTGTCTTCCCCCTCAACGCCCATATGAATGCCACCAACCATGCCATTGTGCAGACACTGGTCCACCTCATGAACCCGGAGAACGTGCCCAAGCCCTGCTGCGCCGCCACCAAGCTGCACGCCATCTCCGTGCTCTACTTCGACGACAACTCCAACGTCATCCTGAAGAAGTACAAGAACATGGTGGTCAGGGCCTGTGGTTGCCACTGACGACCGCCAAACCGCCGCGTCGTCACGGTCACCTGACCGCGGCGCGGGCTGCAGCGGAGGCTGTATGAA

Function

NR:

description
bone morphogenetic protein 7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934811.1 False 2222 mRNA 0.50 7 9357029 9405871
TU1072816 True 1012 lncRNA 0.48 3 9402431 9405490

Neighbor

gene id symbol gene type direction distance location
LOC100305285 pdcd6 coding upstream 27446 9319032 ~ 9329583 (+)
LOC110535237 LOC106579624 coding upstream 60070 9278925 ~ 9296959 (+)
LOC118937475 NA coding upstream 66165 9290727 ~ 9290864 (+)
LOC118937300 NA coding upstream 380625 8972920 ~ 8976404 (+)
LOC110535229 LOC106579621 coding upstream 388544 8938355 ~ 8968485 (+)
LOC118937311 LOC106579630 coding downstream 5007 9410878 ~ 9412277 (+)
LOC110535246 tm14c coding downstream 765978 10171849 ~ 10175528 (+)
LOC118937312 NA coding downstream 861393 10267264 ~ 10269419 (+)
LOC110535248 LOC106579638 coding downstream 900014 10305885 ~ 10367679 (+)
LOC110536547 LOC106579641 coding downstream 989567 10395438 ~ 10624020 (+)
G940576 NA non-coding upstream 14428 9297107 ~ 9342601 (+)
G940586 NA non-coding upstream 75889 9280929 ~ 9281140 (+)
G940579 NA non-coding upstream 86015 9270643 ~ 9271014 (+)
G940574 NA non-coding upstream 92377 9262749 ~ 9264652 (+)
G940573 NA non-coding upstream 95737 9260998 ~ 9261292 (+)
G940618 NA non-coding downstream 433 9406304 ~ 9407558 (+)
G940616 NA non-coding downstream 1954 9407825 ~ 9409672 (+)
G940620 LOC106579628 non-coding downstream 7318 9413189 ~ 9421918 (+)
G940658 NA non-coding downstream 12385 9418256 ~ 9419257 (+)
G940660 NA non-coding downstream 18876 9424747 ~ 9425079 (+)
LOC118937463 NA other upstream 501592 8845565 ~ 8855476 (+)
G940376 NA other upstream 704508 8651504 ~ 8652993 (+)
G940313 NA other upstream 816162 8532540 ~ 8540867 (+)
G940247 NA other upstream 917254 8439480 ~ 8439775 (+)
LOC110536544 LOC106590277 other upstream 975449 8379847 ~ 8497020 (+)
G941893 NA other downstream 839238 10245109 ~ 10245506 (+)
G942702 NA other downstream 1704855 11110726 ~ 11111336 (+)
G944957 NA other downstream 3981679 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 4658677 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 4749483 14154784 ~ 14202999 (+)
G940632 NA non-coding upstream 20647 9367051 ~ 9381784 (+)

Expression


Co-expression Network