LOC118937311 (LOC106579630)


Basic Information

Item Value
gene id LOC118937311
gene name LOC106579630
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 9410878 ~ 9412277 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034552.1
gtcagcggACAGATGCACTTGTATCTTAAACATTTGAATCGGGGGGCCAATGCGTACTGGTGAATTGTTACGTCCCTATTGTTTAGCAGTGTGAATCACaaattcattcatttctacctGTTAGCCGCTGAAGAGACTACTGACCCCATGGCCTTGAGTCAGGGGAAATTCCAGAGAACGCACTAGTGATAAAGGTTGTGATGGTCCTACCATGGACTGTCCTAGTGATAACGGTTGTGATGGTCCTACCATGGACTGTCCTAGTGATAACGGTTGTGATGGTCCTACCATGGACTGTCCTAGTGATAAAGGTTGTGATGGTCCTACCATGGACTGTCCTAGTGATAAAGGTTGTGATGGTCCTACCATGGACTGTCCTAGTGATAAAGGTTGTGATGGTCCTACCATGGACTGTCCTAGTGATAACGGTTGTGATGGTCCTACCATTTACTGTCCTAGTGATAACGGTTGTGATGGTCCTACCATGGACTGTCCTAGTGATAACGGTTGTGATGGTCCTACCATGGACTGTCCTAGTGATAAAGGTTGTGATGGTCCTACCATGGACTGTCCAAGTGATAAAGGTTGTGATGGTCCTACCATGAACTGTCCTAGTGATAAAGGTTGTGATGGTCCTACCATGGACTGTCCTAGTGATAAAGGTTGTGATGGTCCTACCATGGACTGTCCTAGTGATAAAGGTTGTGATGGTCCTACCATGGACTGTCCCTAGTGATAACGGTTGTGATGGTCCTACCATGGACTGTCCTAGTGATAAAGGTTGTGATGGTCCTACCATGGACTGTCCTAGTGATAACGGTTGTGATGGTCCTACCATGGACTGTCCTAGTGATAACAGTTGTGATGGTCCTACCATGGACTGTCCTAGTGATAACGGTTGTGATGGTCCTACCATGGACTGTCCTAGTGATAAAGGTTGTGATGGTCATTGACTTAAAGAACAATGAGGGAGTCAGATCCACCATTCCAGGTAGCGCAGCATCATTGATCAACCAATCCTACAATGAGGTGGCTGTGGAGCCAGAGATCACAACCTCAGCTAATCCAGTTCACAACTTCTGCTTCCTGTGGCCCTGGGTCACACCTGCTGTTTGTGTGTTTATAACAACAGCATGTCTCAAGTTGCAGGATCTCAACGTCTTACTGTTCACACCCCAGAGCATGGTAGACTTCACTAGCGCTATTTCCGAGCCATCTCTCAGCTCCAGACAGTCAATGTACAATATAGAACACCTACTGAAAACCTGTTGCAGATTGTCCTCTCCACTGTGCAGTCCACTTTGCCAATCTTGACATCAG

Function

NR:

description
PREDICTED: uncharacterized protein LOC106579630

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034552.1 True 1320 mRNA 0.47 2 9410878 9412277

Neighbor

gene id symbol gene type direction distance location
LOC110535239 LOC106579629 coding upstream 5007 9357029 ~ 9405871 (+)
LOC100305285 pdcd6 coding upstream 81295 9319032 ~ 9329583 (+)
LOC110535237 LOC106579624 coding upstream 113919 9278925 ~ 9296959 (+)
LOC118937475 NA coding upstream 120014 9290727 ~ 9290864 (+)
LOC118937300 NA coding upstream 434474 8972920 ~ 8976404 (+)
LOC110535246 tm14c coding downstream 759572 10171849 ~ 10175528 (+)
LOC118937312 NA coding downstream 854987 10267264 ~ 10269419 (+)
LOC110535248 LOC106579638 coding downstream 893608 10305885 ~ 10367679 (+)
LOC110536547 LOC106579641 coding downstream 983161 10395438 ~ 10624020 (+)
LOC110535252 LOC106579643 coding downstream 1219087 10631364 ~ 10639422 (+)
G940616 NA non-coding upstream 1206 9407825 ~ 9409672 (+)
G940618 NA non-coding upstream 3320 9406304 ~ 9407558 (+)
G940632 NA non-coding upstream 29094 9367051 ~ 9381784 (+)
G940576 NA non-coding upstream 68277 9297107 ~ 9342601 (+)
G940620 LOC106579628 non-coding downstream 912 9413189 ~ 9421918 (+)
G940658 NA non-coding downstream 5979 9418256 ~ 9419257 (+)
G940660 NA non-coding downstream 12470 9424747 ~ 9425079 (+)
G940670 NA non-coding downstream 21437 9433714 ~ 9434020 (+)
G940678 NA non-coding downstream 35879 9448156 ~ 9448409 (+)
LOC118937463 NA other upstream 555441 8845565 ~ 8855476 (+)
G940376 NA other upstream 758357 8651504 ~ 8652993 (+)
G940313 NA other upstream 870011 8532540 ~ 8540867 (+)
G940247 NA other upstream 971103 8439480 ~ 8439775 (+)
LOC110536544 LOC106590277 other upstream 1029298 8379847 ~ 8497020 (+)
G941893 NA other downstream 832832 10245109 ~ 10245506 (+)
G942702 NA other downstream 1698449 11110726 ~ 11111336 (+)
G944957 NA other downstream 3975273 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 4652271 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 4743077 14154784 ~ 14202999 (+)

Expression


Co-expression Network