LOC110535246 (tm14c)


Basic Information

Item Value
gene id LOC110535246
gene name tm14c
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 10171849 ~ 10175528 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620129.2
ATGAGGTCCAGAGTGTTCCAGACAAATTAGGTTCTGCTGTCTGCCATGTGGAGAAAAACTTCACTTCCCGTGGGGTCTTTGGCAACGCGTCATTGCTACGATACGCACTACGAAGCAGCGTTGAAGGATACGCCAACAGGAGCAAGAATGACTGATTGGGTTGGATATGGGTATGCAGCACTCATTGCATCCGGAGGCGTGATGGGCTATGTCAAAGCACGCAGTGTCCCCTCCTTGGCGGCAGGTCTTCTCTTCGGCAGCTTAGCTGGGGTTGGTGCCTACCAGATATCGCAAGATCCTACAAATGTTTGGGTGTCTCTAGTCACATCAGGAGCCCTGGCAGGTGTGATGGGAAAGAGATTCTATGGTTCCAGGAAGATGATGCCTGCTGGAATGATGGCAGCAGCAAGTCTACTTATGGTGGGGAAGCTGGGTGTTGGAATGCTGCTGCAGAAGCCCCAGGAGTCATAATGCACTGAAATGAAGAAGACGTTCACAGACACCGATGTCAAAATCACTATCCTCTCGTGCTTTTCTACGGTCTTATATCGTTCACCAAGAATATCAGTCAGATATGTGAATGTTATTTTGGAAAAATGTATAATTGAACACTGATTTATGAAATAACAAGGACTGTCATGTGTTTTTGTTCATATTGTTACGCAGATTTGTCATTACATTACAAGAGATAAATGAACCGTGAAGTTGCGTATAAGGT
>XM_021620131.2
TTACTATTCATCCAAAGGTTTCCTAAACTTGACAATGTAGCCATCTGCCTTTTAAATTAATGCCGATCCCACACATGGGCAACTCCATTGACTCAATGGGCACTGTTGTCTTAAACTGCTAGAATGACTGATTGGGTTGGATATGGGTATGCAGCACTCATTGCATCCGGAGGCGTGATGGGCTATGTCAAAGCACGCAGTGTCCCCTCCTTGGCGGCAGGTCTTCTCTTCGGCAGCTTAGCTGGGGTTGGTGCCTACCAGATATCGCAAGATCCTACAAATGTTTGGGTGTCTCTAGTCACATCAGGAGCCCTGGCAGGTGTGATGGGAAAGAGATTCTATGGTTCCAGGAAGATGATGCCTGCTGGAATGATGGCAGCAGCAAGTCTACTTATGGTGGGGAAGCTGGGTGTTGGAATGCTGCTGCAGAAGCCCCAGGAGTCATAATGCACTGAAATGAAGAAGACGTTCACAGACACCGATGTCAAAATCACTATCCTCTCGTGCTTTTCTACGGTCTTATATCGTTCACCAAGAATATCAGTCAGATATGTGAATGTTATTTTGGAAAAATGTATAATTGAACACTGATTTATGAAATAACAAGGACTGTCATGTGTTTTTGTTCATATTGTTACGCAGATTTGTCATTACATTACAAGAGATAAATGAACCGTGAAGTTGCGTATAAGGT
>XM_021620130.2
TGTCTTAATGTAACCATGATTGCGTTCCGTTCCCAGTGCAGCTCAGGAATGACTGATTGGGTTGGATATGGGTATGCAGCACTCATTGCATCCGGAGGCGTGATGGGCTATGTCAAAGCACGCAGTGTCCCCTCCTTGGCGGCAGGTCTTCTCTTCGGCAGCTTAGCTGGGGTTGGTGCCTACCAGATATCGCAAGATCCTACAAATGTTTGGGTGTCTCTAGTCACATCAGGAGCCCTGGCAGGTGTGATGGGAAAGAGATTCTATGGTTCCAGGAAGATGATGCCTGCTGGAATGATGGCAGCAGCAAGTCTACTTATGGTGGGGAAGCTGGGTGTTGGAATGCTGCTGCAGAAGCCCCAGGAGTCATAATGCACTGAAATGAAGAAGACGTTCACAGACACCGATGTCAAAATCACTATCCTCTCGTGCTTTTCTACGGTCTTATATCGTTCACCAAGAATATCAGTCAGATATGTGAATGTTATTTTGGAAAAATGTATAATTGAACACTGATTTATGAAATAACAAGGACTGTCATGTGTTTTTGTTCATATTGTTACGCAGATTTGTCATTACATTACAAGAGATAAATGAACCGTGAAGTTGCGTATAAGGT

Function

NR:

description
transmembrane protein 14C-like isoform X2

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620129.2 False 718 mRNA 0.46 5 10171849 10175528
XM_021620131.2 False 694 mRNA 0.44 5 10172015 10175528
XM_021620130.2 True 619 mRNA 0.45 5 10172788 10175528

Neighbor

gene id symbol gene type direction distance location
LOC118937311 LOC106579630 coding upstream 759572 9410878 ~ 9412277 (+)
LOC110535239 LOC106579629 coding upstream 765978 9357029 ~ 9405871 (+)
LOC100305285 pdcd6 coding upstream 842266 9319032 ~ 9329583 (+)
LOC110535237 LOC106579624 coding upstream 874890 9278925 ~ 9296959 (+)
LOC118937475 NA coding upstream 880985 9290727 ~ 9290864 (+)
LOC118937312 NA coding downstream 91736 10267264 ~ 10269419 (+)
LOC110535248 LOC106579638 coding downstream 130357 10305885 ~ 10367679 (+)
LOC110536547 LOC106579641 coding downstream 219910 10395438 ~ 10624020 (+)
LOC110535252 LOC106579643 coding downstream 455836 10631364 ~ 10639422 (+)
vapa vapa coding downstream 490679 10666207 ~ 10671992 (+)
G941804 NA non-coding upstream 1580 10170010 ~ 10170269 (+)
G941768 NA non-coding upstream 37309 10134337 ~ 10134540 (+)
G941710 NA non-coding upstream 96689 10074640 ~ 10075160 (+)
G941697 NA non-coding upstream 115199 10056449 ~ 10056650 (+)
G941682 NA non-coding upstream 134973 10036643 ~ 10036876 (+)
G941808 NA non-coding downstream 2701 10178229 ~ 10178783 (+)
G941836 gcm2 non-coding downstream 63760 10239288 ~ 10241490 (+)
G941838 NA non-coding downstream 66339 10241867 ~ 10244420 (+)
G941894 NA non-coding downstream 70461 10245989 ~ 10246361 (+)
G941915 NA non-coding downstream 103107 10278635 ~ 10285304 (+)
LOC118937463 NA other upstream 1316412 8845565 ~ 8855476 (+)
G940376 NA other upstream 1519328 8651504 ~ 8652993 (+)
G940313 NA other upstream 1630982 8532540 ~ 8540867 (+)
G940247 NA other upstream 1732074 8439480 ~ 8439775 (+)
LOC110536544 LOC106590277 other upstream 1790269 8379847 ~ 8497020 (+)
G941893 NA other downstream 69581 10245109 ~ 10245506 (+)
G942702 NA other downstream 935198 11110726 ~ 11111336 (+)
G944957 NA other downstream 3212022 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 3889020 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 3979826 14154784 ~ 14202999 (+)

Expression


Co-expression Network