LOC118937312


Basic Information

Item Value
gene id LOC118937312
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 10267264 ~ 10269419 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034554.1
GAGCGAGTGTCAGTTGGTGAAGTCGTTCTGTGACAGAAAGCAGCAGAGGTTCGAGTCACTAGGAGAGCCCAGAGAGCAGCTCGGCACAGAGGGATCAGGTTGCAGGACCACTGGAACCGCCAATGAGTTGGTGACAAAGGAAAGAGAGGACACGACCCTCCACTTCCTGTTGAAACACTCACCACCTTGGATCCTGACGGTGACGTCATACAGATACGCATAATGGATCATAGACCGTGATCACAGTTCTCACATAATGGATCATAGACCGTGATCACAGTTCTCACATAATGGATCATAGACCGTGATCACAGTTCTCACATAATGGATCATAGACCGTGATCACAGTTCTCACATAATGGATCATAGACCGTGATCACAGTTCTCACATAATGGATCATAGACCGTGATCACAGTTCTCACATAATGGATCATAGACCGTGATCACAGTTCTCACATAATGGATCATAGACCGTGATCACAGTTCTCACACAAGCAATCTTGCTCATCTTTTTTTCTGGCATTCTTCAAAATACACACAATAATAGCTAATAGTTAACACATCTATAGCTAATAGCTACCACATCCATAGCTAATAGCTAACACATCCATAGCTAATAGCTAACACATCCATAGCTAATAGCTAACACATCCATAGCTAATAGCTAACACATCCATAGCTAACAGCTACCACATCCATAGCTAATAGCTAACACACCAATAGCTAAAAGATCATGGCTGATGAATTTCAGGGACGTGGTTCGTCGCCATAGAGCAAGACAGACcatgcttatttatttttttgaagtACTTTTATTTTGTCTGTTTGCAGATAGCCATTCAAAGATATTGATCAGTGGTTGCATTTCTCAATGTATAAAGTCTACCAAAGTCGTCAGGAAAGCCTGTTCAATATTGCTTTTTCTAAAGATCCAGTCACCCAGTCAGGTTTACCAGCACATTTTGTACCCGTAAATGAAGACATTCAAATACATTGTGATACATCAGGTATAAGGATCTGCAGTGTTTCGAAGGCATCTTTAGTTTAACAATGATTTCAGTGAATGCTCTGGACTGATATtttttgtacacactgtacacatggGCTATATTCAATAAAGCAACAGCAAAGTAAATTATGTCAAAGTATTGTGGAAATTGCTGATTGTATTCAGGTTTTTACACTATGAGAATATAAACTATGAATTGCATAGATTACTGCGTGGTCAGGAATGGATGGAGTTTTCACACTTGCATTTCAGCAATTGAAAGTGCAAAGGAAATGAGCGCATCACTCCTGTACGTACAGTGTGTTACACATACGTTGTCAAGCTCCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034554.1 True 1338 mRNA 0.40 3 10267264 10269419

Neighbor

gene id symbol gene type direction distance location
LOC110535246 tm14c coding upstream 91736 10171849 ~ 10175528 (+)
LOC118937311 LOC106579630 coding upstream 854987 9410878 ~ 9412277 (+)
LOC110535239 LOC106579629 coding upstream 861393 9357029 ~ 9405871 (+)
LOC100305285 pdcd6 coding upstream 937681 9319032 ~ 9329583 (+)
LOC110535237 LOC106579624 coding upstream 970305 9278925 ~ 9296959 (+)
LOC110535248 LOC106579638 coding downstream 36466 10305885 ~ 10367679 (+)
LOC110536547 LOC106579641 coding downstream 126019 10395438 ~ 10624020 (+)
LOC110535252 LOC106579643 coding downstream 361945 10631364 ~ 10639422 (+)
vapa vapa coding downstream 396788 10666207 ~ 10671992 (+)
LOC110535262 LOC106579655 coding downstream 756218 11025637 ~ 11064599 (+)
G941894 NA non-coding upstream 20903 10245989 ~ 10246361 (+)
G941838 NA non-coding upstream 22844 10241867 ~ 10244420 (+)
G941836 gcm2 non-coding upstream 25774 10239288 ~ 10241490 (+)
G941808 NA non-coding upstream 88481 10178229 ~ 10178783 (+)
G941804 NA non-coding upstream 96995 10170010 ~ 10170269 (+)
G941915 NA non-coding downstream 9216 10278635 ~ 10285304 (+)
G941925 NA non-coding downstream 26176 10295595 ~ 10296629 (+)
G941968 NA non-coding downstream 116405 10385824 ~ 10386095 (+)
G941982 NA non-coding downstream 129401 10398820 ~ 10399079 (+)
G941983 NA non-coding downstream 131000 10400419 ~ 10401001 (+)
G941893 NA other upstream 21758 10245109 ~ 10245506 (+)
LOC118937463 NA other upstream 1411827 8845565 ~ 8855476 (+)
G940376 NA other upstream 1614743 8651504 ~ 8652993 (+)
G940313 NA other upstream 1726397 8532540 ~ 8540867 (+)
G940247 NA other upstream 1827489 8439480 ~ 8439775 (+)
G942702 NA other downstream 841307 11110726 ~ 11111336 (+)
G944957 NA other downstream 3118131 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 3795129 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 3885935 14154784 ~ 14202999 (+)
G946644 NA other downstream 4041156 14310575 ~ 14314318 (+)

Expression


Co-expression Network