LOC110535252 (LOC106579643)


Basic Information

Item Value
gene id LOC110535252
gene name LOC106579643
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 10631364 ~ 10639422 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620141.2
AGGGGCAACAATTTAACAACCAGAGGGGAGAGTCACGCCATCAGAACAGAAGAACATGCTTTAATTCGGAAAAGTAATAGGTAAACAAAGGTAACAAACGTTCACCTCTGGAGCAAGAATCGACTATTTGGGCAAGGTTACTGTTTCGTGCGTGTCGGAATGAAGTCTACTCAAATCTTACTATCCACTGCACTTATTTTCCTTCTCTCGGGACTTTCCATGACCACAGCCTGCAACAAGGCTCTCTGTGCCAGTGATGTCAGCAAATGTCTCATTCAGGAGCTGTGTCAGTGCAGGCCCTCGGATGGGAACTGCTCGTGCTGTAAAGAGTGTATGCTCTGTCTTGGCACACTGTGGGAGGAGTGCTGCGACTGTGTGGGGATGTGTAACCCTAGGAACTACAGTGACACTCCAGCTACCTCCAAAAGCACGGTGGAGGAACTCTACCGACCCATCCCCTCACTGTTCCGCGCCCTCACCGAGGGCGAAGCGCCCATCAACATGATGGTGGTGTCCTTCCCCGTGGCCGAGGAACTATCTTACCACGAGAACCTGGTGTCCTTCCTGGAGACCATGGAGGACCAGCACGAAAATGTCTCCCTGCCTGGGAACAGTATCCACGCCAGCTACGATAACACCCAAAGtactgaagATAACATGTGCACTGTGGTGTACTTTGATGACTGCGTGTCCATCCGCCAGTGCAAGCAGTACTGCGAGTCCATGGGCGGCTCCAAGTACCGCTGGTTCCATAACGCCTGCTGTGAATGCATCGGCCCGGAGTGCCTCGACTACGGCAGCAAAGCCGTCAAGTGCATGAACTGCCTGTTCTAATGAAAGCCAATGGGACTTGCCACGTTAGGGTACTGTGCTCAAAATGCCACAAGGGGGCACTGTCTGCAATATGCAGATGGGCTGATGAGGTTGACCGAGGAAGATGACTTGTGCCTCAGCCTTTTGTAAAATGTTTCCATATTGTGA

Function

NR:

description
twisted gastrulation protein homolog 1-A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620141.2 True 981 mRNA 0.52 6 10631364 10639422

Neighbor

gene id symbol gene type direction distance location
LOC110536547 LOC106579641 coding upstream 7344 10395438 ~ 10624020 (+)
LOC110535248 LOC106579638 coding upstream 263685 10305885 ~ 10367679 (+)
LOC118937312 NA coding upstream 361945 10267264 ~ 10269419 (+)
LOC110535246 tm14c coding upstream 455836 10171849 ~ 10175528 (+)
LOC118937311 LOC106579630 coding upstream 1219087 9410878 ~ 9412277 (+)
vapa vapa coding downstream 26785 10666207 ~ 10671992 (+)
LOC110535262 LOC106579655 coding downstream 386215 11025637 ~ 11064599 (+)
LOC110535263 lrrc30 coding downstream 516258 11155680 ~ 11158395 (+)
LOC110535264 LOC106579657 coding downstream 538910 11178332 ~ 11497838 (+)
trnaa-ugc-48 NA coding downstream 696088 11335510 ~ 11335585 (+)
G942096 NA non-coding upstream 9717 10621448 ~ 10621647 (+)
G942093 NA non-coding upstream 26257 10604902 ~ 10605107 (+)
G942092 NA non-coding upstream 28565 10602556 ~ 10602799 (+)
G942087 NA non-coding upstream 43357 10587777 ~ 10588007 (+)
G942086 NA non-coding upstream 48014 10583064 ~ 10583350 (+)
G941976 NA non-coding downstream 575 10639997 ~ 10641784 (+)
G942106 NA non-coding downstream 7046 10646468 ~ 10647288 (+)
G942123 NA non-coding downstream 46621 10686043 ~ 10686884 (+)
G942124 NA non-coding downstream 47942 10687364 ~ 10687579 (+)
G942134 LOC106579648 non-coding downstream 58276 10697698 ~ 10704427 (+)
G941893 NA other upstream 385858 10245109 ~ 10245506 (+)
LOC118937463 NA other upstream 1775927 8845565 ~ 8855476 (+)
G940376 NA other upstream 1978843 8651504 ~ 8652993 (+)
G940313 NA other upstream 2090497 8532540 ~ 8540867 (+)
G940247 NA other upstream 2191589 8439480 ~ 8439775 (+)
G942702 NA other downstream 471304 11110726 ~ 11111336 (+)
G944957 NA other downstream 2748128 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 3425126 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 3515932 14154784 ~ 14202999 (+)
G946644 NA other downstream 3671153 14310575 ~ 14314318 (+)

Expression


Co-expression Network