LOC110535272 (LOC106579661)



Basic Information


Item Value
gene id LOC110535272
gene name LOC106579661
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 11545457 ~ 11548240 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021620172.2
CTCGCGATACTTTCCGGCACGGCCCCGGACGTATATATTGAGGTGTCCAACTTTTTTACTGTTACACTTTACTTGTGGGCCAGGTTGGACAGTATCCAGTGGAAATGTCGCAGTATTCTGGAAAGATCACCTTCTACGAGGGAAAATGCTTCACCGGCAGGCAGCTGGAGGTCAGGGGCGACTGTGATAACTTCCAGGACCGTGGCTTCATGAACCGCGTCAACTCCATCCGTGTGGAGAGCGGCGCCTTCTGCTGCTTCGACCACCCCGACTTCAAGGGACAGCAGTACATCCTGGAGCACGGCGAATACCCAGAGTTCCAGCGTTGGAACAGCCACAACGACCACATGGGCTCCTGCAAGCCCATCAAGATGCACGGCGAGCACTACAGAATGGAACTGTTCGAGGCCTGTAACTTCTCTGGCCAGTGTGTGGAGGTCTGTGACGACTGCCCCTTCCTGCAGAGCCGCGGCTTCAGCAAGAGCTGCATCAACTCCATCAAGGTCTACGGAGACGGAGCCTGGGTGATGTACGAGGAGCCTAACTTCCGCGGACGCATGTACATcgtggagagaggagactactGCAGTCACAATGAGTGGCAGGCCGAGAACCCCAACATCCAGTCCATCCGTAGAGTGGTCAACTACTTCTAAACCTTTTCCCCTGTCCTGCCCCAGACCCGCATGGACTGACTTTCACCATTCTAGAAatgtacaataaaaaaaaatacatttaaaaaaacataa

Function


NR:

description
gamma-crystallin N-B-like

GO: NA

KEGG:

id description
K23483 CRYG; gamma-crystallin

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021620172.2 True 749 mRNA 0.53 4 11545457 11548240

Neighbor


gene id symbol gene type direction distance location
LOC110535269 LOC106579659 coding upstream 3959 11499972 ~ 11541498 (+)
LOC110535264 LOC106579657 coding upstream 47619 11178332 ~ 11497838 (+)
trnaa-ugc-48 NA coding upstream 209872 11335510 ~ 11335585 (+)
LOC110535263 lrrc30 coding upstream 387062 11155680 ~ 11158395 (+)
LOC110535262 LOC106579655 coding upstream 480858 11025637 ~ 11064599 (+)
LOC110535274 LOC100136506 coding downstream 249839 11798079 ~ 11885766 (+)
LOC110535275 NA coding downstream 532023 12080263 ~ 12080894 (+)
LOC110535276 LOC106579583 coding downstream 628673 12176913 ~ 12191408 (+)
LOC110535277 LOC106579584 coding downstream 645165 12193405 ~ 12246357 (+)
LOC110535283 LOC106579606 coding downstream 716825 12265065 ~ 12274786 (+)
G943044 NA non-coding upstream 166986 11376506 ~ 11378471 (+)
G943032 NA non-coding upstream 203023 11342090 ~ 11342434 (+)
G942921 NA non-coding upstream 300999 11164136 ~ 11244458 (+)
G942917 NA non-coding upstream 383929 11161299 ~ 11161528 (+)
G943158 NA non-coding downstream 20553 11568793 ~ 11569048 (+)
G943185 NA non-coding downstream 60996 11609236 ~ 11610212 (+)
G943186 NA non-coding downstream 69517 11617757 ~ 11618092 (+)
G943586 NA non-coding downstream 206453 11754693 ~ 11754932 (+)
G943593 NA non-coding downstream 210613 11758853 ~ 11759228 (+)
G942702 NA other upstream 434121 11110726 ~ 11111336 (+)
G941893 NA other upstream 1299951 10245109 ~ 10245506 (+)
LOC118937463 NA other upstream 2690020 8845565 ~ 8855476 (+)
G940376 NA other upstream 2892936 8651504 ~ 8652993 (+)
G940313 NA other upstream 3004590 8532540 ~ 8540867 (+)
G944957 NA other downstream 1839310 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 2516308 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 2607114 14154784 ~ 14202999 (+)
G946644 NA other downstream 2762335 14310575 ~ 14314318 (+)
G946643 NA other downstream 2769768 14318008 ~ 14318623 (+)

Expression



Co-expression Network