Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110535270 |
| gene name | nub1 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048575.1 |
| NCBI id | CM023229.2 |
| chromosome length | 86280908 |
| location | 11548709 ~ 11555017 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| nub1 | Predicted to be involved in regulation of ubiquitin-dependent protein catabolic process. Orthologous to human NUB1 (negative regulator of ubiquitin like proteins 1). |
| description |
|---|
| NEDD8 ultimate buster 1-like isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021620168.2 | False | 2702 | mRNA | 0.49 | 15 | 11548709 | 11553885 |
| XM_021620166.2 | False | 2667 | mRNA | 0.49 | 15 | 11548709 | 11554071 |
| XM_021620170.2 | False | 2646 | mRNA | 0.49 | 15 | 11548709 | 11554071 |
| XM_036934868.1 | True | 2530 | mRNA | 0.49 | 15 | 11548709 | 11555017 |
11,541,000
11,542,000
11,543,000
11,544,000
11,545,000
11,546,000
11,547,000
11,548,000
11,549,000
11,550,000
11,551,000
11,552,000
11,553,000
11,554,000
11,555,000
11,556,000
11,557,000
NC_048575.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110536548 | LOC106579654 | coding | downstream | 405563 | 11061866 ~ 11143146 (-) |
| LOC110535260 | LOC106579653 | coding | downstream | 553288 | 10871971 ~ 10995421 (-) |
| LOC110535259 | LOC106579652 | coding | downstream | 695912 | 10836358 ~ 10852797 (-) |
| LOC110535257 | LOC106579649 | coding | downstream | 720878 | 10709778 ~ 10827831 (-) |
| LOC110535256 | LOC106579648 | coding | downstream | 842612 | 10702517 ~ 10706097 (-) |
| LOC110535273 | cssa19h9orf152 | coding | upstream | 4275 | 11559292 ~ 11561350 (-) |
| LOC100136701 | LOC106579582 | coding | upstream | 395996 | 11951013 ~ 12161340 (-) |
| LOC110535278 | LOC106579585 | coding | upstream | 690431 | 12245448 ~ 12260149 (-) |
| LOC110535279 | LOC106579586 | coding | upstream | 740257 | 12295274 ~ 12343935 (-) |
| LOC110536549 | LOC106579607 | coding | upstream | 797725 | 12348249 ~ 12366127 (-) |
| G943381 | NA | non-coding | downstream | 42506 | 11487190 ~ 11506203 (-) |
| G943261 | NA | non-coding | downstream | 283442 | 11264912 ~ 11265267 (-) |
| G942893 | NA | non-coding | downstream | 408714 | 11139754 ~ 11139995 (-) |
| G942886 | NA | non-coding | downstream | 419680 | 11128778 ~ 11129029 (-) |
| G942874 | NA | non-coding | downstream | 455307 | 11093194 ~ 11093402 (-) |
| G943412 | NA | non-coding | upstream | 3813 | 11558830 ~ 11559035 (-) |
| G943420 | NA | non-coding | upstream | 17300 | 11572317 ~ 11572576 (-) |
| G943422 | NA | non-coding | upstream | 18318 | 11573335 ~ 11573572 (-) |
| G943439 | NA | non-coding | upstream | 37171 | 11592188 ~ 11595474 (-) |
| G943442 | NA | non-coding | upstream | 49976 | 11604993 ~ 11605341 (-) |
| G942483 | LOC106590343 | other | downstream | 804032 | 10743314 ~ 10744677 (-) |
| G942454 | NA | other | downstream | 906066 | 10639629 ~ 10642643 (-) |
| G942434 | LOC106579641 | other | downstream | 928025 | 10612420 ~ 10620684 (-) |
| G941131 | NA | other | downstream | 2096344 | 9452001 ~ 9452365 (-) |
| G945345 | LOC105027308 | other | upstream | 838380 | 12393397 ~ 12394138 (-) |
| ly86 | NA | other | upstream | 2757495 | 14308595 ~ 14315733 (-) |
| mtfr1 | LOC106579534 | other | upstream | 3329318 | 14884317 ~ 14897579 (-) |
| G947750 | NA | other | upstream | 3651414 | 15206431 ~ 15209597 (-) |
