LOC110535274 (LOC100136506)


Basic Information

Item Value
gene id LOC110535274
gene name LOC100136506
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 11798079 ~ 11885766 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620174.2
CCCCTCTCAGAAGCCATCTTGGACTCAGTTCAGTTTCTTGCATGTGAATGTCGGACCCTGTCCTCAGCGACTCACGACAACAGAGTAGAAACGGTTAACGCGCACCGCGGAGGGTGACATTTGTTTATTTTAATCATCGAGTTTCTTTTACCTTGTCGATTTTACATCCTGGAATCGACCGATCCTTTCCCGATGGATTTGTTTATATGTAAAACTTACTTCTAGCCCGTGCAATTTTGTTGCATTGGGGGACTGTACACACAAAAGCAACGCGAACTCTTGGTGCTGTGGACATCGAAGGCCTTGGGTCATTTGGCTCGTTGTGTAATGCCTATCATCTTTTTAAATGTTCGCAAAGGAAAAGAGGTTAAAAAGGAGAACATCTGGTGTGTTTCTTTTTAATTAAAGGAATATGTTTGCTACCTGGCTGACTTTTGCACTTCTTCTGGGAACTTTTTGTGCAGGACCAAGCCATGGCGAGGTGGACACACGGGAGTGCTTGTTCTATAACGTGAACTATGAGATCGAGAAGACCAACCAGAGCGGGGTAGAGAGCTGCGAGGGTGAGAAGGACAAGAGGTTGCACTGCTACGCCTCCTGGCGCAACAACTCTGGTACCATCGAGCTGGTGAAGAAGGGCTGCTGGCTGGACGACTTCAACTGCTACGACAGgcAAGAGTGTGTGGCGACAGAGGAGAATCCTCAGGTCTTCTTCTGTTGCTGCGAGGGGAACTTCTGCAACGAGAGGTTCACCCACCTGCCCGATGTCAATGGACCAAtgATCAAGCCGCCTCCCCCCACGCCCACCCTACTCAATGTGCTGGTCTACTCATTGCTGCCTATCACCATGCTCTCCATGGCCCTGCTGCTGGCCTTCTGGATGTACCACCACCGCAAGCCGCCCTATGGCCACGTGGACATCAACGAGGATCCTGGCCTAGttccccctccttcccccctgGTGGGGCTCAAACCCCTGCAGTTGCTGGAGATCAAGGCAAGGGGGCGCTTCGGCTGCGTGTGGAAGGCCCAGATGATGAACGAATACGTGGCTGTCAAGGTCTTCCCCATTCAGGATAAGCAGTCGTGGATGAATGAGCGGGACGTGTTCCTCACGCCGGGGATGAAGCACGAGAACCTGCTGCGCTACATTGCGGCCGAGAAGCGCGGGACCAACCTGGAGATGGAGTTGTGGCTCATCTCTGAGTTCCACCAGAGGGGCTCCCTGACAGACTATCTGAAGGGGAACGCGATCAGCTGGACTGAGCTGTGTCACATCTCTGGGACCATGGCCTGCGGGCTGGCCTACCTGCACGAGGACGTTCCTCGCTACAAAGGAGAGGGACCCAAACCGGCCATTGCTCACAGGGACTTCAAGAGTAAGAACGTGATGCTGCGGACAGACCTGACGGCCATCATCGGAGACTTTGGGCTGGCGGTGCGGTTCGAGCCGGGCAAGCCCCCAGGGGACACTCATGGCCAGGTGGGTACCAGGCGCTACATGGCGCCAGAGGTCCTGGAAGGGGCCATTAACTTTCAGCGGGATGCCTTCCTCAGGATAGACATGTACTCCATGGGCCTGGTGCTGTGGGAGCTGGTGTCGCGCTGCAAGGCGGCCGACGGACCAGTGGATGAGTACATGTTGCCGTTTGAGGAGGAGATCGGTCAGCACCCGTCCCTGGAGGACTTACAGGATGTGGTGGTCCACAAAAAGATGAGGCCGGTCTTCAAGGACTGCTGGCTCAAACACGCTGGCCTAGAGTCGATGTGTGAGACGATAGAGGAGTGCTGGGACCATGACGCCGAGGCGCGGCTTTCGGCCGGATGCGTGGAGGAGCGCATCTCGCAGATCCGCCGGCTGACCAGCCCCCCTACCTCAGACTGCTTGGTCTCCATGGTTACCTCTGTCACCAACGTGGACTTGCCACCCAAAGAGTCCAGTATCTGAGCCCCAACCTCGCCCTaccaacacccacccacccaacgcAGAGCGACAACATGCAAGCAAACAAAACAGCCGTGTCTTGTTCTTCTTCAGCTTCAGCCGAtctcagaagaagaaaaaacatgaATGCAGCTGCTGTTTTATCCTGAcatctttttttacatttatttttattgttattttcttTCCAATCGGATCAATATTACCAGCACACTTCTTCTCTACTGTGTTTTTATCAAGAGAGgacaagaaaaaaataataaaaaaaaaaactaaattgaCATCTCAAAAGTGCATTCAGGTGCCGACTTATGAATGCTGACAAGGTGCAGGTACCTCAACCGTTTTCAGCTCTCAGCCGTTTATTTGGGTTTAGTTTattcctctttctgtcttctgGACAGGATTGCCTGTGACAAAACCAACCAACTAAGCAACCATCTACCATGTTGGACAATACATCAATGCTGCAAAAACCTTATATGAACATGAAGACTTACACACAACTAACCTTCCTCAAGGGATTTTAGTTTTCAGAAAACTTTTCCTTTTCCGACAGCGTGCTATACAAACCTTCGGAACTAACGGGTGTCTCTAGAACACAGAGAAAAGTGGAAGGCAACTGGACTCGTTTCATTTTGGATTTTGCTATGTTCATACTGGTGACTCTGAATGGGGTTGACTATAGCATATTAATCAGTGGATGTTGAAAAGTTCAAAAGAAAATGGCTTGCTTCCCACAGCATCTGGATAGTGCATTTTGTTTGGTACGGAGCTACTTCTCAGGTAACCAGTCTCAAGGGGGCAGGAGATTATGATTAAAGGTGATATCGCAATGCGTCCCGTAAAGTAGAGCGAGAGCCACATCCGCTGCCTTTGATGGGTAGGGTGGGGGCAGACTTTGGTGAGAGGGGCTTTTCTGACATGGTTCAAACCTTTTTAGCTGAGATCAAAATGGTCTAAACATTGAAGGTGCCCaaacaaactacaaaaacaacaatAGGTGCAAGACCATGGTGAAGATTTGTATGTATTTCGGGTGTGAGAAtgaatgcgtgtgtgtatgcttgtgacTAGTTGTGCAGTGAGAGTGACAATGTGTAGCGGAGAGGGATGGAAATTAAGACCATGAAAAGAAAGTTTCAGCCGTAAACAGCTGAAGATGAGTTAAATGGTTtcctttttttgttgtatttttgttCTGTTATTTCTTCATATTTTGTTTCAGTGAGTGTATTGGACATTGGGAGCTAAGGACCTAGACTCTATCCACAGAAGGCCCATCTTAGGCCTCAGCAAAAGCCTATATCCTTCACTAGTGTCGAGAGGGAGGGCAGAGTACAGTTGAAGCGTCACTGCCTGGTACCTTCGTTATTTACCTCTTTCTCACATGGACCAAACTTAGAGTTTTGACCGGGTAGGTCCTGCATTGTAGAAAGGTTTTCGACAGGGCACCAAGCGTAACAACCAATTTTAAACTTCACTTCATTCAGATTGGTTACACGTTCTCGTTCATTAGAAGAGAAAAGTGACACGCAACATTTCCGTATGCCATAATGTAACAGTGAATGTCTACAATGCTGCTGTTTCAGCTCAAAGATGAACATGTGTTCCATTTTTTCCCCCCCAGTGCATTACACACACAAGTCTCAGTAGATTTAACAAGGAATGACAAGGCTTCCGATGTGAAAGAGAACAACACAAACAATAAAATCGAGTATAAATAAATCAGAAAActaaaacacaaaaaaatatatattgttcaTGAACCACAGACCACCTCAAACCAGAAATACCTCAGATTTTTCAAtgtatatgagttctgttatatatTTTGTTAGTTGTGTTGACTTGTAGTAAGTATGTtttaatgtgattttttttttgggggggggggggggcttttgtGATTAAGGAATTTTGGAAGATAAAATGTACCATGTCATGTTGTATAAATGAAAGAAAATCTTGTAAATAGCGCTATACAGTTGTAGAATTCTacctatatacagtatgacaCCTGAGCATTATTCATCATTTCTGCTGACTTCTCCCAACTTGTCTTTTCCTCTCCGTTACCTAAAGGGACCATGAACCTGTATTTGGTTTTTCCTCCCAAAAAACAAATATCCACCATCATCGTGTCTGACCTGTAATATTTTTGCATACCCCACGATATACGCTACATcgctacaaaagtatgtggacacctggtcgtcaaacatctcattccaaaatcatgggcattaatatggagttggttcccaccttgctgctattacagcctccactcttctgggaaggctttcaactaga

Function

NR:

description
activin receptor type-2B-like

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0023014 signal transduction by protein phosphorylation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004702 obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity molecular_function
GO:0005024 transforming growth factor beta-activated receptor activity molecular_function

KEGG:

id description
K13596 ACVR2B; activin receptor type-2B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620174.2 True 4261 mRNA 0.47 11 11798079 11885766

Neighbor

gene id symbol gene type direction distance location
LOC110535272 LOC106579661 coding upstream 249839 11545457 ~ 11548240 (+)
LOC110535269 LOC106579659 coding upstream 256581 11499972 ~ 11541498 (+)
LOC110535264 LOC106579657 coding upstream 300241 11178332 ~ 11497838 (+)
trnaa-ugc-48 NA coding upstream 462494 11335510 ~ 11335585 (+)
LOC110535263 lrrc30 coding upstream 639684 11155680 ~ 11158395 (+)
LOC110535275 NA coding downstream 194497 12080263 ~ 12080894 (+)
LOC110535276 LOC106579583 coding downstream 291147 12176913 ~ 12191408 (+)
LOC110535277 LOC106579584 coding downstream 307639 12193405 ~ 12246357 (+)
LOC110535283 LOC106579606 coding downstream 379299 12265065 ~ 12274786 (+)
LOC110535281 riok3 coding downstream 389516 12275282 ~ 12283258 (+)
G943604 NA non-coding upstream 18952 11777447 ~ 11779127 (+)
G943593 NA non-coding upstream 38851 11758853 ~ 11759228 (+)
G943586 NA non-coding upstream 43147 11754693 ~ 11754932 (+)
G943186 NA non-coding upstream 179987 11617757 ~ 11618092 (+)
G943185 NA non-coding upstream 187867 11609236 ~ 11610212 (+)
G943616 NA non-coding downstream 1868 11887634 ~ 11889472 (+)
G943615 NA non-coding downstream 3797 11889563 ~ 11891174 (+)
G943653 NA non-coding downstream 21650 11907416 ~ 11908721 (+)
G943661 NA non-coding downstream 31214 11916980 ~ 11917189 (+)
G943662 NA non-coding downstream 32865 11918631 ~ 11919023 (+)
G942702 NA other upstream 686743 11110726 ~ 11111336 (+)
G941893 NA other upstream 1552573 10245109 ~ 10245506 (+)
LOC118937463 NA other upstream 2942642 8845565 ~ 8855476 (+)
G940376 NA other upstream 3145558 8651504 ~ 8652993 (+)
G940313 NA other upstream 3257212 8532540 ~ 8540867 (+)
G944957 NA other downstream 1501784 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 2178782 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 2269588 14154784 ~ 14202999 (+)
G946644 NA other downstream 2424809 14310575 ~ 14314318 (+)
G946643 NA other downstream 2432242 14318008 ~ 14318623 (+)

Expression


Co-expression Network