LOC110535283 (LOC106579606)


Basic Information

Item Value
gene id LOC110535283
gene name LOC106579606
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 12265065 ~ 12274786 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620187.2
gacacacacagacacacagagagagagagactagctaACCTACCCTCACTAGGAGGAAGTAGGAATAATCTGAAtgtgagagacaggagacagcaacTTAATGAAGTCAGTATAGACAAACTGAGAACAGCAGTTCATCATGACAAGTCTTCGAAGAGTGTTCTTTGGCCTCTCTGctgctctgtggagtgtatctATTGCAGAGGAGATCGTAGTATCAGGATATGAGGGAGGAGAAGCAGAGATCAGTTGCTCCTATGGCCATGGGTATGAGAATTACAAAAAGTACCTCTGTAATAGGGGCTGTGGCAACTCTGATATTGTCATTGAAACTCATTTGGGAGTTCACCACACTAAGAAAGGCAGCTTTTCTCTGCATGATGACATAAAGAGAAGAGTCTTCACTGTGAATGTCACTCAACTGACCCTACAGCATGCTGGGATATACTGGTGCGCTGTGAGCAGATATGGGAAAGACATCTATACAGAAGTCAGACTGCAAGTAGTCAAAGACTGGTGCTGTGACAACCGTGCCCTCGTCCAGGGCAACAGCCAAGCTTCTGTGTCAGTAAACTGTCCCTACAAGCCTCAGCACAAGGAGAGTCAGAAGTACTTCTGCATAGGGACCCGACCCTCAACATGTCTACAACAGGCTACAGTCACATCCAAGCACAACACTGGGAGGTTCTCTCTCCATGACAACAACGCAGATGGAGTGTTCACCGTGACAATCACTGGGCTGACCCAAAAGGATTCTGGGATGTATTTGTGTGGCATCCGTGTCGATCGAGGTTTGGATGTCTACTCTGTGGTACATCTAGAGGTCAAAGAAACAACAAcgcctctgtctccatctccaatGACCCTAGTCACCACCGTGACCTCAGTGACCTctacatcatcattatcatcaacatcatcatcactaaTGCCACCTTCATCAGCAGGCTTcaccaacaGGACCTATGTGTTTATTGCGTTCACTGTGATGACTTTTTCTGTGAGTCTGTTTGTGTTGATGTTGGCACTCATCATAATATACAGATGCAAGAGGATCCAGGGGTCTGCAGAACCACACAGAGAAACAGGGCTGTCTGAGTCGGTGTATGAGGATGTTCATGAGAATACagaagctgtgtgtgtgaatgtgaaacTGGCTTCCTGTAAGAAACAATACTCCACCCAACCTTATgaggatgttgatgatgatgacgacgCCCAACAGGAGTCTGTCTATCAAGACATCACACCTTATGACAACATCTATCAAAGCCTCAATATCACtaccacagacagacactgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaatagtagTAAGGTAGTGCTAGACGATGATGCAGTGGCATATGAGTTTCAGAGGGGGATGCTGTTTTTTTGTCAAATAATAAGAGGAATGGCTGCTCAACTGAGAATAATATTAGACAGGCTGATTGGACATTGAATGTGTGTGATCAGTGAGAACTGACAAGTTACCAAGTTGCGCAGGGGCAGACTGGCCACTTGACATTTCTGGCAAATGCCCGATGGCCTGGTCCATTTTTTGCCTTGTGGCCTGtcattatctggctaataataGGGTCCTCAAGGAAGAAAATGGCCCGGGGGGTTAGAAATGCCAGCgccgatttctggtcccagtctgcCCCTGCACGCACACACTTTGAACAATTACATGTATTCTGAATTAAACTTATTGAATGCCAATATTGTGTAGAATACCTTGATTAATGGTGAAAGACCTGTAAAGGTGTCTGGCCTACTAATTTACTTCAGAGATAATGTGTTTGCTTTTTAGGCTGATATTGTTAAAAATGCTTGTTAAAGaataacatacattttaaaaacaaaattGCAAGACCGGATGCATTTTTTTTATACTAAAAAGAGCCGAGTTTGGTTCAGGAGCAGGGTAAGatccatatactgtatatggtAGGAGCAGGG

Function

NR:

description
uncharacterized protein LOC110535283

GO: NA

KEGG:

id description
K20395 CD300B_D_F; CO300B/D/F antigen

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620187.2 True 2073 mRNA 0.45 7 12265065 12274786

Neighbor

gene id symbol gene type direction distance location
LOC110535277 LOC106579584 coding upstream 18708 12193405 ~ 12246357 (+)
LOC110535276 LOC106579583 coding upstream 73657 12176913 ~ 12191408 (+)
LOC110535275 NA coding upstream 184171 12080263 ~ 12080894 (+)
LOC110535274 LOC100136506 coding upstream 379299 11798079 ~ 11885766 (+)
LOC110535272 LOC106579661 coding upstream 716825 11545457 ~ 11548240 (+)
LOC110535281 riok3 coding downstream 496 12275282 ~ 12283258 (+)
rmc1 mic1 coding downstream 9095 12283881 ~ 12295047 (+)
LOC110535284 LOC106579588 coding downstream 95292 12370078 ~ 12384286 (+)
LOC110535285 LOC106579590 coding downstream 118587 12393373 ~ 12400089 (+)
LOC110536550 LOC106579608 coding downstream 489840 12764626 ~ 12794372 (+)
G943829 NA non-coding upstream 11746 12252246 ~ 12253319 (+)
G943827 LOC106579585 non-coding upstream 12868 12251980 ~ 12252197 (+)
G943820 LOC106583515 non-coding upstream 95619 12168999 ~ 12169446 (+)
G943817 NA non-coding upstream 100529 12164268 ~ 12164536 (+)
G943787 NA non-coding upstream 142450 12117079 ~ 12122615 (+)
G943877 NA non-coding downstream 44990 12319776 ~ 12343587 (+)
G944232 NA non-coding downstream 105664 12380450 ~ 12381622 (+)
G944423 NA non-coding downstream 351814 12626600 ~ 12626805 (+)
G944512 NA non-coding downstream 464085 12738871 ~ 12739358 (+)
G944513 NA non-coding downstream 465195 12739981 ~ 12740224 (+)
G942702 NA other upstream 1153729 11110726 ~ 11111336 (+)
G941893 NA other upstream 2019559 10245109 ~ 10245506 (+)
LOC118937463 NA other upstream 3409628 8845565 ~ 8855476 (+)
G940376 NA other upstream 3612544 8651504 ~ 8652993 (+)
G940313 NA other upstream 3724198 8532540 ~ 8540867 (+)
G944957 NA other downstream 1112764 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 1789762 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 1880568 14154784 ~ 14202999 (+)
G946644 NA other downstream 2035789 14310575 ~ 14314318 (+)
G946643 NA other downstream 2043222 14318008 ~ 14318623 (+)

Expression


Co-expression Network