LOC110535281 (riok3)


Basic Information

Item Value
gene id LOC110535281
gene name riok3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 12275282 ~ 12283258 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620186.2
GGCTAGGTttcttctctcttccttttctAATATCTCTGGAACAACGCAAAGCAGAATTTGCTCTACAGCTCTCGTAAAATCCTTGTCATTTAGCAAGAAATCTGTTCATTAGTGACATTAACTCTATTTGGCTTAAGATAACACATCTAAACGGTTTCATTATCGTGTCTAATTCTGGAAACGATAAAAGGAGACTGTTTGTCGTCGTAAACGTGTTGCTAGCTAAGATTATTGCTCGACATCTGACTGTCTGAATACTGCTGCTGTCAAAGACTGAAACTCTGGGCTGCTGTCATGGATCAAATAGGGATCACTGCAGAAGGACCAAAGAGTCCATGGGGCGCCACCACTACCAAGGCGGTGTCACCCTGTTCCCTCGCTGACGTCATGAGCGAGCAGCTGGCAAAGCAACTGGATGAGGAAAGCAATGCTTTCCCTGATTCCCCAGATGTCAATGCTGCTCTGGATGCTGGTGAGGAGCCAGAAACGGACTGTGATCTGATGCTGGCTCAGATGCTGCAGATGCAGTTTGACAAGGAGTTTGACACCCAGCTGcgcacagaagaaaaaaaattaaACGGGGATAGCAAACTGTCCATCTCCTTTGAGAACTATCGCATGGTGCACCCTTACGAGGATAGCGACAGCTCCGAGGATGAAGTTGATTGGCAAGACACTCGCCACGACCCCTACAAAGCCGATAAGCCCACGACAACTCCAAGAAAAGGCTTTACTGGGAAAGGCAAGAACATCACTACTAAGCACGATGAGGTTGTGTGTGGCAGGAAGAATACTGCACGCATGGACAATTTTGCCCCAGAGATCAATGTGGGAGATGGGCTTGGCATGGACCTGAAGCTCTCTAACCAGGTGTACAACTCCCTGAAGCAACACTGCCACTCCGAGCAGCGTCGCAGTGCCCGACTGCATGACAAAAAGGAGCACTCCACTGCTGAACAAGCAGTGGACCCAAGGACCCGTCTGCTCATGTACAAAATGGTGAACGCAGGCGTTCTGGAGAACATCAACGGCTGCATCAGCACTGGAAAGGAGTCTGTGGTGTTCCACGCAGATGGGGGAAGcATGGAGGAGAAGGCTGTCCCAGATGAGTGTGTACTCAAGGTCTtcaagaccacactcaatgagttCAAGAACCGTGACAAGTACATCAAGGACGACTACCGCTTCAAGGAACGCTTCAGCAAGCTGAATCCCCGCAAGATCATCCGCCTCTGGGCTGAGAAAGAGATGCACAACCTGGCTCGTATGAAAAAGGCTGACATCCCATGCCCCGAGGTGGTGATTCTGAAGAAGCACATCCTGGTGATGTCGTTCATTGGCAAGGATCATGTGCCGGCTCCCAAACTGAAAGAAGCCATGTTGGGCTCTGAGGACATGAACAGGGCCTATTACCAAGTGCTTCATATGATGCAGCAGTTGTATCACGAGTGTAACCTCATCCACGCCGACCTGAGCGAATACAACATGCTGTGGCATCAGGGGAAGGTTTGGCTAATTGATGTAAGTCAGTCCATTGAGCCCAATCACCCTCATGGCCTTGAGTTCCTGTTCAGGGACTGCAGGAACGTGGCTACGTTCTTCCAGAAGGGTGGGGTGTCGGAAGCCATGAATGTGTACGAGCTCTTCAACGTCGTGTCTGGGCTGCAGCTCAGCGGTGACAGCGAGGCAGACTTCCTTGCCCAGATCGAGGCACTGGAGAAGATGAATGAAGACCACGTGCAGAGAAGGGGCAAGAAAACCTACTCCAGCACCAGCGACGGAGGGCCTCCCCTATTACACCACGAGGATGATTAACGATGAGACGTTAGACACCATGATTAGCTCCATGGATCCTGTTCAGTTGATTCTGTTTGAGAGAATGGGCGAGTAAACCCCCACCCAAAGGTCTTTCATCACAATGAGGGACACAAGGTCGAAAGGTCACTGCATCCCAAGATGCTACACTGGGGGCAGTGGGCTGAACAGCCTCCCATACACCTCCATGAAATGTCAACATCTCATTCCATTACTACGTTTGTAGATGAAATGGATGGGGACGTCTAAGGGGGACATGACGGATGCATCTACATGCGTACACAATTATTGCTTTTTAAAAATTAGATGGTATTCAGCATTCATGACATGAAGTTATCTTCACAGGTGAACTGGGCTCGAATGAAAAGAGCTTTGCGTTATATGAAGGGAACAAATTGCAATCCAATATTTGGTGAAGAGCCCTAGTTCGTGTCAGTTAATATTTTAATCATGAAAGGCACAGTCATGAATGAAGACTCAATGAATTGTTTTTCATTGGCACCAAGATGCATTGAGGTCCATTGATTGTACAAGGGAGCTGTGTTTTCTGTGATCTCCAACTTCAATATAATGTTGGAAATAAATGGCATAAATTTTAGTTATGCTTTGTCATTAATTTTCCTTTGCTCTGGACaaatggagcagcagcagcttgaCAGGAGACTCCAAACTGCTCTTAAACTAGGAGTTATAAAACAATACAAGCAATCTATATGTAACTATAACATGTCAATATTACTCAGTCAGCCAGTCCAACTTGTATAAAAGCCTGCAGAAACCACC
>XM_036934899.1
AGTCCATGGGGCGCCACCACTACCAAGGCGGTGTCACCCTGTTCCCTCGCTGACGTCATGAGCGAGCAGCTGGCAAAGCAACTGGATGAGGAAAGCAATGCTTTCCCTGATTCCCCAGAgtcgcagttgtaaatgacaacttgttctcaactgacctacctggttaaataaagTGTCAATGCTGCTCTGGATGCTGGTGAGGAGCCAGAAACGGACTGTGATCTGATGCTGGCTCAGATGCTGCAGATGCAGTTTGACAAGGAGTTTGACACCCAGCTGcgcacagaagaaaaaaaattaaACGGGGATAGCAAACTGTCCATCTCCTTTGAGAACTATCGCATGGTGCACCCTTACGAGGATAGCGACAGCTCCGAGGATGAAGTTGATTGGCAAGACACTCGCCACGACCCCTACAAAGCCGATAAGCCCACGACAACTCCAAGAAAAGGCTTTACTGGGAAAGGCAAGAACATCACTACTAAGCACGATGAGGTTGTGTGTGGCAGGAAGAATACTGCACGCATGGACAATTTTGCCCCAGAGATCAATGTGGGAGATGGGCTTGGCATGGACCTGAAGCTCTCTAACCAGGTGTACAACTCCCTGAAGCAACACTGCCACTCCGAGCAGCGTCGCAGTGCCCGACTGCATGACAAAAAGGAGCACTCCACTGCTGAACAAGCAGTGGACCCAAGGACCCGTCTGCTCATGTACAAAATGGTGAACGCAGGCGTTCTGGAGAACATCAACGGCTGCATCAGCACTGGAAAGGAGTCTGTGGTGTTCCACGCAGATGGGGGAAGcATGGAGGAGAAGGCTGTCCCAGATGAGTGTGTACTCAAGGTCTtcaagaccacactcaatgagttCAAGAACCGTGACAAGTACATCAAGGACGACTACCGCTTCAAGGAACGCTTCAGCAAGCTGAATCCCCGCAAGATCATCCGCCTCTGGGCTGAGAAAGAGATGCACAACCTGGCTCGTATGAAAAAGGCTGACATCCCATGCCCCGAGGTGGTGATTCTGAAGAAGCACATCCTGGTGATGTCGTTCATTGGCAAGGATCATGTGCCGGCTCCCAAACTGAAAGAAGCCATGTTGGGCTCTGAGGACATGAACAGGGCCTATTACCAAGTGCTTCATATGATGCAGCAGTTGTATCACGAGTGTAACCTCATCCACGCCGACCTGAGCGAATACAACATGCTGTGGCATCAGGGGAAGGTTTGGCTAATTGATGTAAGTCAGTCCATTGAGCCCAATCACCCTCATGGCCTTGAGTTCCTGTTCAGGGACTGCAGGAACGTGGCTACGTTCTTCCAGAAGGGTGGGGTGTCGGAAGCCATGAATGTGTACGAGCTCTTCAACGTCGTGTCTGGGCTGCAGCTCAGCGGTGACAGCGAGGCAGACTTCCTTGCCCAGATCGAGGCACTGGAGAAGATGAATGAAGACCACGTGCAGAGAAGGGGCAAGAAAACCTACTCCAGCACCAGCGACGGAGGGCCTCCCCTATTACACCACGAGGATGATTAACGATGAGACGTTAGACACCATGATTAGCTCCATGGATCCTGTTCAGTTGATTCTGTTTGAGAGAATGGGCGAGTAAACCCCCACCCAAAGGTCTTTCATCACAATGAGGGACACAAGGTCGAAAGGTCACTGCATCCCAAGATGCTACACTGGGGGCAGTGGGCTGAACAGCCTCCCATACACCTCCATGAAATGTCAACATCTCATTCCATTACTACGTTTGTAGATGAAATGGATGGGGACGTCTAAGGGGGACATGACGGATGCATCTACATGCGTACACAATTATTGCTTTTTAAAAATTAGATGGTATTCAGCATTCATGACATGAAGTTATCTTCACAGGTGAACTGGGCTCGAATGAAAAGAGCTTTGCGTTATATGAAGGGAACAAATTGCAATCCAATATTTGGTGAAGAGCCCTAGTTCGTGTCAGTTAATATTTTAATCATGAAAGGCACAGTCATGAATGAAGACTCAATGAATTGTTTTTCATTGGCACCAAGATGCATTGAGGTCCATTGATTGTACAAGGGAGCTGTGTTTTCTGTGATCTCCAACTTCAATATAATGTTGGAAATAAATGGCATAAATTTTAGTTATGCTTTGTCATTAATTTTCCTTTGCTCTGGACaaatggagcagcagcagcttgaCAGGAGACTCCAAACTGCTCTTAAACTAGGAGTTATAAAACAATACAAGCAATCTATATGTAACTATAACATGTCAATATTACTCAGTCAGCCAGTCCAACTTGTATAAAAGCCTGCAGAAACCACCT

Function

symbol description
riok3 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in maturation of SSU-rRNA. Predicted to act upstream of or within protein phosphorylation and ribosome biogenesis. Predicted to be part of preribosome, small subunit precursor. Predicted to be active in cytosol. Is expressed in axis; myotome; and somite. Orthologous to human RIOK3 (RIO kinase 3).

NR:

description
serine/threonine-protein kinase RIO3-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08872 RIOK3, SUDD; RIO kinase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620186.2 False 2598 mRNA 0.47 13 12275282 12283257
XM_036934899.1 True 2323 mRNA 0.48 13 12276108 12283258

Neighbor

gene id symbol gene type direction distance location
LOC110535283 LOC106579606 coding upstream 496 12265065 ~ 12274786 (+)
LOC110535277 LOC106579584 coding upstream 28925 12193405 ~ 12246357 (+)
LOC110535276 LOC106579583 coding upstream 83874 12176913 ~ 12191408 (+)
LOC110535275 NA coding upstream 194388 12080263 ~ 12080894 (+)
LOC110535274 LOC100136506 coding upstream 389516 11798079 ~ 11885766 (+)
rmc1 mic1 coding downstream 623 12283881 ~ 12295047 (+)
LOC110535284 LOC106579588 coding downstream 86820 12370078 ~ 12384286 (+)
LOC110535285 LOC106579590 coding downstream 110115 12393373 ~ 12400089 (+)
LOC110536550 LOC106579608 coding downstream 481368 12764626 ~ 12794372 (+)
LOC110535287 LOC106579593 coding downstream 524318 12807576 ~ 12877501 (+)
G943829 NA non-coding upstream 21963 12252246 ~ 12253319 (+)
G943827 LOC106579585 non-coding upstream 23085 12251980 ~ 12252197 (+)
G943820 LOC106583515 non-coding upstream 105836 12168999 ~ 12169446 (+)
G943817 NA non-coding upstream 110746 12164268 ~ 12164536 (+)
G943787 NA non-coding upstream 152667 12117079 ~ 12122615 (+)
G943877 NA non-coding downstream 36518 12319776 ~ 12343587 (+)
G944232 NA non-coding downstream 97192 12380450 ~ 12381622 (+)
G944423 NA non-coding downstream 343342 12626600 ~ 12626805 (+)
G944512 NA non-coding downstream 455613 12738871 ~ 12739358 (+)
G944513 NA non-coding downstream 456723 12739981 ~ 12740224 (+)
G942702 NA other upstream 1163946 11110726 ~ 11111336 (+)
G941893 NA other upstream 2029776 10245109 ~ 10245506 (+)
LOC118937463 NA other upstream 3419845 8845565 ~ 8855476 (+)
G940376 NA other upstream 3622761 8651504 ~ 8652993 (+)
G940313 NA other upstream 3734415 8532540 ~ 8540867 (+)
G944957 NA other downstream 1104292 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 1781290 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 1872096 14154784 ~ 14202999 (+)
G946644 NA other downstream 2027317 14310575 ~ 14314318 (+)
G946643 NA other downstream 2034750 14318008 ~ 14318623 (+)

Expression


Co-expression Network