Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110536549 |
| gene name | LOC106579607 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048575.1 |
| NCBI id | CM023229.2 |
| chromosome length | 86280908 |
| location | 12348249 ~ 12366127 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: V-type proton ATPase 116 kDa subunit a isoform 1-like |
| id | name | namespace |
|---|---|---|
| GO:0071466 | cellular response to xenobiotic stimulus | biological_process |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036936638.1 | False | 2371 | mRNA | 0.46 | 14 | 12352742 | 12366127 |
| TU1076845 | True | 5364 | TUCP | 0.40 | 4 | 12348249 | 12358879 |
12,336,000
12,338,000
12,340,000
12,342,000
12,344,000
12,346,000
12,348,000
12,350,000
12,352,000
12,354,000
12,356,000
12,356,000
12,358,000
12,360,000
12,362,000
12,364,000
12,366,000
12,368,000
12,370,000
12,372,000
12,374,000
12,376,000
NC_048575.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110535279 | LOC106579586 | coding | downstream | 8807 | 12295274 ~ 12343935 (-) |
| LOC110535278 | LOC106579585 | coding | downstream | 92593 | 12245448 ~ 12260149 (-) |
| LOC100136701 | LOC106579582 | coding | downstream | 191402 | 11951013 ~ 12161340 (-) |
| LOC110535273 | cssa19h9orf152 | coding | downstream | 791392 | 11559292 ~ 11561350 (-) |
| LOC110535270 | nub1 | coding | downstream | 797725 | 11548709 ~ 11555017 (-) |
| LOC118937466 | LOC106579607 | coding | upstream | 87 | 12366214 ~ 12367407 (-) |
| hs6st1b | LOC106579591 | coding | upstream | 87970 | 12454097 ~ 12542258 (-) |
| LOC110535290 | LOC106579596 | coding | upstream | 516731 | 12882858 ~ 12892957 (-) |
| LOC110535288 | LOC106579597 | coding | upstream | 530367 | 12896494 ~ 13027095 (-) |
| LOC110535292 | LOC106579599 | coding | upstream | 728433 | 13094560 ~ 13319271 (-) |
| G944199 | NA | non-coding | downstream | 83743 | 12268776 ~ 12268999 (-) |
| G944192 | NA | non-coding | downstream | 97548 | 12254930 ~ 12255194 (-) |
| G944153 | NA | non-coding | downstream | 142853 | 12193461 ~ 12209889 (-) |
| G944159 | NA | non-coding | downstream | 147275 | 12205086 ~ 12205467 (-) |
| G944137 | NA | non-coding | downstream | 181362 | 12171158 ~ 12171380 (-) |
| G944254 | NA | non-coding | upstream | 20147 | 12386274 ~ 12386528 (-) |
| G945479 | NA | non-coding | upstream | 259271 | 12625398 ~ 12625601 (-) |
| G945480 | NA | non-coding | upstream | 259840 | 12625967 ~ 12626286 (-) |
| G945515 | NA | non-coding | upstream | 314903 | 12681030 ~ 12681375 (-) |
| LOC110536548 | LOC106579654 | other | downstream | 1272225 | 11061866 ~ 11143146 (-) |
| G942483 | LOC106590343 | other | downstream | 1608065 | 10743314 ~ 10744677 (-) |
| G942454 | NA | other | downstream | 1710099 | 10639629 ~ 10642643 (-) |
| G942434 | LOC106579641 | other | downstream | 1732058 | 10612420 ~ 10620684 (-) |
| G941131 | NA | other | downstream | 2900377 | 9452001 ~ 9452365 (-) |
| G945345 | LOC105027308 | other | upstream | 27270 | 12393397 ~ 12394138 (-) |
| ly86 | NA | other | upstream | 1946385 | 14308595 ~ 14315733 (-) |
| mtfr1 | LOC106579534 | other | upstream | 2518208 | 14884317 ~ 14897579 (-) |
| G947750 | NA | other | upstream | 2840304 | 15206431 ~ 15209597 (-) |
| G947894 | LOC106579543 | other | upstream | 2999823 | 15365950 ~ 15366301 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| bowfin (Amia calva) | AMCG00019833 | NA | coding | CM030124.1 | CM030124.1 | 48308234 ~ 48352820 (+) |
