LOC110535284 (LOC106579588)


Basic Information

Item Value
gene id LOC110535284
gene name LOC106579588
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 12370078 ~ 12384286 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620188.2
TCAATGATGGGGGTGGTCTCGCGTCATGTGATCCCCAAGCTTCACCGAAGTCCTTTGTTGATGGTGATACACAAAACCTCACTGGGACATTGTCTGGGTAAATTGCTACAACAACACAATATATTTTCGCCTTTGCTGGGATTGTGTTGATGAAGGAGGGACATTTTAACAAGGGATATTTTCCGCTGGGATAAAATAGAGAAAGGCAAGCACGTCAAAGGTAAAGGCGACAGTCAAAATAGCCCATGATCGCACACCCTATCTGTACGACGGTCAGTCGAGCGGCCAGTAGAGTCAACCCGACATTTGGTTTATGTAATTTGTGTGTTAAAAGTCCGAGATAATGGTGTTTTTTCTATGGCTATCCTGGGAGAAAATCCCATTTCTGCGTTGGAGATGAAACCTTTTTTTAGCCGTGGGTGAAACCGTTTGCAAATAACATCGCGTTTTGTTCGTTGGGTGTCCATACACATCTGGTGGATTCGTTGAAATATTTCTGCCATTTGAAAAAAGCATAGGTTAGGAAACATGGGAAACGACAGTGTGCCCATTCTACACAGCATTGTAAGCATCATGTCCAGAGGATATCCCCTCTCATCTCACGGACCCTCGGCAGGCCGTTTTCTCTCCTTGGTCCTCTGCCTTTTGGCCGTCTCTACACTGCCTGGAGCACAGGCTTCATACTCTCAGAGCAGCGAATGTGTCTCGGGAAAAGGCAAGGGCTGCCTAGATGCGTCTGAGAAGAAGAGTGACCTGAGAGTGTGTGATGCTGTAACATGTCGTTACGGGGGAACCTGTCGAGAGAACGGGCCTGACTTGAAATGTGTCTGCCAGTTCCATTGCTCTAAGAAGTACATCTCTGTTTGTGGGTCCAACGGAGACACCTTCCAGAACGAGTGCTTCATGAGGAGAGCAGCGTGCAAGCAGCAGAAGTCCATATCACAGGTCTCTGAAGGGGCCTGCTCCACCGATGGCAGTTCCGGATCAGGCGACGGAGATGATGAAGGATCAGGCACAGGCAGAGGGAAAAAGACTACAAAATGTGGCACCTGCAAGTTTGGAGCAGAATGCGACGTGGACTCTGAGGATATCTTGTGCATGTGCAACATTGACTGCAGTGGCCATAATGACAACCCGGTGTGTGGAACAGACGGAAACTCCTACACTGCCCCCTGTCACGTAAGAGAGGCATCGTGCTTGAAGCAGGTGAAGATTGACGTGAAGCATCTGGGGAGATGTCCAGAAAAAGGGCAAAAAAAAGACAAAGACGATGGTAGCAAAAGCAAGACTGATCTTTTTGACACGGCAGACATAGGGGAGGATAGAGGTTATGGAGAGATCCTCACCCCTTGCACAGAGGACTACGCCAACTTCTGTGAACACGGCCAATGTGAAATCAAGTATAGCATCCCCACATGCCGGTGTGATTCGGGCTACACTGGCCAGCAGTGTGACGAGATCCAAGACTTCAACATCCTGTACGTGGTTCCCAGTGGACAGAAACTCCACTACGTTCTCATAGCGGCCATCATCGGAGCCGTACAGATCGCCATCATCGTCGCCGTTGTCATGTGTTTCACAAGgAGGTGTCCCAAAAACCAGAGGGGACGAAGATAAACGCAGCACCTTGGACATTTTCCCTCTGGGACTTCATCCAGGATGAtgtagctgtttttttttttaatgcattttgGATTGCACCACATGGATCACATTTTGATATCTGTTGTTTTGTGCCTCCTTTATTTTGAATGgacatgtattattttttttataatgggGCCTTATTTTTCTCTCCCCTATGGACATTTGCAGCTCTTGCTGCTTTTTTGTCAGACTGCTGCATTATAATTTTTTTCAACGGGCAGAAAAAGGACAGCTATTTTTATCTGATCATCCATTGTTTgcaaggtggtggtggtggtagcttTAGGCACACAAACCTTGGACACCGAGCTTCAGCTTTAGTGACTTTCTCTCAGTACATTTTACTTCTTTGTTTATGTTTTGTTTTTACAAAATTCAACTATATACCAAATGCAGTTTTCTATAAATGAGGTATAAGCTGATGTGTACAGTTTGTTTTGGTTACTTTTCAATATACCATTCCGGGGATGGAACACTTTTTCCCACTAGGTActaatttaaatgtttttatatataatTTGTTGTTTTTGATGTTCTGATGTTGTTTGTATTATTGTTAATGAAATAGTTGTAAACATATTTGATTGTAGATTCTGTATATTGCATGAGCTGTGAAAATGTGTTTAGTGATGTCGTTTCAGTGGTATTAAAACATCTGTGTTCCAAAC

Function

NR:

description
tomoregulin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620188.2 True 2315 mRNA 0.45 10 12370078 12384286

Neighbor

gene id symbol gene type direction distance location
rmc1 mic1 coding upstream 75031 12283881 ~ 12295047 (+)
LOC110535281 riok3 coding upstream 86820 12275282 ~ 12283258 (+)
LOC110535283 LOC106579606 coding upstream 95292 12265065 ~ 12274786 (+)
LOC110535277 LOC106579584 coding upstream 123721 12193405 ~ 12246357 (+)
LOC110535276 LOC106579583 coding upstream 178670 12176913 ~ 12191408 (+)
LOC110535285 LOC106579590 coding downstream 9087 12393373 ~ 12400089 (+)
LOC110536550 LOC106579608 coding downstream 380340 12764626 ~ 12794372 (+)
LOC110535287 LOC106579593 coding downstream 423290 12807576 ~ 12877501 (+)
LOC110535289 LOC106579598 coding downstream 542325 12926611 ~ 12927478 (+)
LOC110535293 LOC106579603 coding downstream 662020 13046306 ~ 13094507 (+)
G943877 NA non-coding upstream 26491 12319776 ~ 12343587 (+)
G943829 NA non-coding upstream 116759 12252246 ~ 12253319 (+)
G943827 LOC106579585 non-coding upstream 117881 12251980 ~ 12252197 (+)
G943820 LOC106583515 non-coding upstream 200632 12168999 ~ 12169446 (+)
G943817 NA non-coding upstream 205542 12164268 ~ 12164536 (+)
G944423 NA non-coding downstream 242314 12626600 ~ 12626805 (+)
G944512 NA non-coding downstream 354585 12738871 ~ 12739358 (+)
G944513 NA non-coding downstream 355695 12739981 ~ 12740224 (+)
G944560 NA non-coding downstream 516380 12900666 ~ 12902175 (+)
G944609 NA non-coding downstream 528154 12912440 ~ 12919262 (+)
G942702 NA other upstream 1258742 11110726 ~ 11111336 (+)
G941893 NA other upstream 2124572 10245109 ~ 10245506 (+)
LOC118937463 NA other upstream 3514641 8845565 ~ 8855476 (+)
G940376 NA other upstream 3717557 8651504 ~ 8652993 (+)
G940313 NA other upstream 3829211 8532540 ~ 8540867 (+)
G944957 NA other downstream 1003264 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 1680262 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 1771068 14154784 ~ 14202999 (+)
G946644 NA other downstream 1926289 14310575 ~ 14314318 (+)
G946643 NA other downstream 1933722 14318008 ~ 14318623 (+)

Expression


Co-expression Network