LOC110535287 (LOC106579593)


Basic Information

Item Value
gene id LOC110535287
gene name LOC106579593
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 12807576 ~ 12877501 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934900.1
TACGAGGGAGTGGACGAGGGGAAAGCTGGGGGCTACTGTAACTCACTGCATGAGAAGAGCGTCGCTGAAATCGTCTGAATACAATACACAAGTAACCTGCGCTTTTCTATCCTTATAAATATTGGACCTTCTGTCTGGTGCTTCTGTTTGAGTTTTTTGTGCATTTCTCTGTGAAATAAGAGTAGACTATTTCGAGAGCTGCCTTGCAAATAATTTCTCTTCCGTCTTTCTGGGACTTTGTAGTTAATGTCTGAGGATTCAACCCCAGAACGCAATAATGTAACTGAATCAAAGACTTCTTTTTTTTCGGGACAAATAGGCCTAGCTACACAGTGTTGATTGAAGCAACCGATTGAGACAGTCATACGCTCGTGTTCCAAGTGAGGATCAGCTCAAAGCATATCCAAAACGCATTACTGTTCCAATGGATTCCTGAAAAGGGGCGTACCATATGCAAGAACCAGACATTGCGGGCAGatcattctactacattctgtaCTGTAAAGTTGACTGGCTGCTGGAACTAGAAATGTATGTTAGAATAGTACCATTTCTTTGACCCGATTAAATATTTGAATGCGCatgtttttaaaagaaaacagTGTTTCCACACGCTCTTATTGGAATAGGCTATGTCATTTGGAAATACGATTTGATtactttgtattattttctaccaCGGCTGGAACAAGCGTTGCTATGCAGATCATGCACTGTTGGCCAATGTTAGCGATACATTTGATCGTCTGACACCATATCTCATTTTAGGGGATATCTTTTAGGCTGTCTCAACCAACTATTGGAAATGTATTTTGCGTAAACAGCTTTTTGGATATTACAAAACCATGATGGCAAACGAGAATCCTTATAACAGTCGCTTTATTGTCGAAAAATACATCCATCACAAACTGTTGAAAATGGGATTTGTATGGAAATTTCAAGGAGAAAACGATTCTCCAAATAATGGCTTTGGGGACCCCTCTACACCCAACTCCCCCGAAGTTTTTGCACGGAGGTCCCAGCCCACTGCCGCGGGAGAGGACACCGACTCTCCTTACCAAAACAGGAGTCCGCAACCTGACCCACATGCCAGGCTCCACAGGGTCCTGCGCGATGCGGGTGGCGAGATTGAAAGAATGTATCAGCGGGACTTTGCAGAGATGTCGGGGCAGTTGCATTTTACACCCAGCACGGCACAGAGAAGGTTTACCGCTGTAATAGATGAGCTCTTCAGCGACGGGGTAAACTGGGGTCGGATTGTGGCTTTCTTTGAGTTTGGAGGGACAATGTGCGTGGAGAGCGTCAACCGGGAGATGACGTCCCAGGTAGACAACATCGCTCGTTGGATGACGGAGTACTTGAACGGACCCCTACAGAACTGGATCCAGGAGAATGGTGGCTGGgacgcCTTTGTGGAGATCTATGAGCAGCAGAGGATCTCTCACTCCTGGCCGTACTTAAAGACAGTGTTCGGCCTGGCCGCCCTGGGAGCCGCCGGAGTCACCATCGGAGCCTTGTTCACCCAGAAGTGATACAAAAGGCCCCAGAAGACCCTCCCCCTCGTCAATCGCCTGCTACCAGATGAAGGCTCCTTACctagtagccccccccccccccccccccaaaaaaaggccCACAGCAAGTTTTCTTTCCAAAAAACTGGCAGCCTATAACTCTGCTGTGCACAGACTACAATATTTCGTCTCTCGTTCCCATCACCTTCTTTTTTCCTCATGTATCTTTGAAAGCACCTCACAGCTTAGCACTGCCCAGCCTGGGCCTGTAGCCCGGTTCTATCCCAGAGCTCCCGGCTCTTCAAATGAAACTGCACAACTCTGTTACTCCCCAACTGCCAACGGAACAGTTCTTTCATACTCTATGCCCCATCCTCCTGCGAAATGAAAAGTACAGCCttgtatatgcacacacacacagatagatgcACCCATGCATATTCTATACTAGTGTAGGAGCTTAACAACAAGGAATATCTATGGAAAGATTGCATACATACTTGTTGGATAATTATACactcatacatagacacacaccaACAGACACAATGAATATTGCATTTTGGAGGTGAACATTTTCACGCAAACTCAAGCGTGCGTTCTCACAACCAAATTATTTGTATGATGTATGGGTAATGAACATAACACAACAAGTGATTGTTTATCCATAAACTGAAAAACAAACTGTTTTTTTTAGATAACTGTTTTCAGCATGATTCTGTAGGACATGTAACATTGTAACATTGACACTGACCGAaaagtaaaacaaaaacaaacaaaaaacatcccaAATGTACAGTACACACCCAGCTTCCATCGCCAGCATGTGTGGTGAAGGTGGCCATTTTTGCCAGTGTCCATGTATGCATGATGACTTTTGATGACATGGAGCACGTTTGGCAGAATGATTGGTTCGGACAAAGtcagggttgtgttcagtggGCCCGAAATGGAAGAGAACCGCCCAAAACCAGGAGTTACAATccaaacttgtccaataagaaatgctcctTTTTGTTTTTCGGCATATTAAACACAGCCTAggtgtttttctctgtgtttgGTTGGTGAAAGCTCACTGTACACAAACCCCCCAAGGGAACTTCAATCAACAGATGAATTCCTTATTAAAGCGCTGATTCatcctccctgtttctctctttgtgGGACTAATGTTGACAA

Function

NR:

description
apoptosis regulator Bcl-2-like isoform X1

GO:

id name namespace
GO:2001243 negative regulation of intrinsic apoptotic signaling pathway biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0097192 extrinsic apoptotic signaling pathway in absence of ligand biological_process
GO:0043154 negative regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0008630 intrinsic apoptotic signaling pathway in response to DNA damage biological_process
GO:0005741 mitochondrial outer membrane cellular_component
GO:0042803 protein homodimerization activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K02161 BCL2; apoptosis regulator Bcl-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934900.1 True 2696 mRNA 0.45 2 12807576 12877501

Neighbor

gene id symbol gene type direction distance location
LOC110536550 LOC106579608 coding upstream 13204 12764626 ~ 12794372 (+)
LOC110535285 LOC106579590 coding upstream 407487 12393373 ~ 12400089 (+)
LOC110535284 LOC106579588 coding upstream 423290 12370078 ~ 12384286 (+)
rmc1 mic1 coding upstream 512529 12283881 ~ 12295047 (+)
LOC110535281 riok3 coding upstream 524318 12275282 ~ 12283258 (+)
LOC110535289 LOC106579598 coding downstream 49110 12926611 ~ 12927478 (+)
LOC110535293 LOC106579603 coding downstream 168805 13046306 ~ 13094507 (+)
dpp6a LOC106579565 coding downstream 569183 13446684 ~ 13814449 (+)
LOC118937473 NA coding downstream 839226 13716727 ~ 13716783 (+)
mcur1 mcur1 coding downstream 946483 13823984 ~ 13848726 (+)
G944513 NA non-coding upstream 67352 12739981 ~ 12740224 (+)
G944512 NA non-coding upstream 68218 12738871 ~ 12739358 (+)
G944423 NA non-coding upstream 180771 12626600 ~ 12626805 (+)
G944232 NA non-coding upstream 425954 12380450 ~ 12381622 (+)
G943877 NA non-coding upstream 463989 12319776 ~ 12343587 (+)
G944560 NA non-coding downstream 23165 12900666 ~ 12902175 (+)
G944609 NA non-coding downstream 34939 12912440 ~ 12919262 (+)
G944679 NA non-coding downstream 149686 13027187 ~ 13121153 (+)
G944714 NA non-coding downstream 206891 13084392 ~ 13084665 (+)
G944675 LOC106579599 non-coding downstream 239121 13116622 ~ 13118471 (+)
G942702 NA other upstream 1696240 11110726 ~ 11111336 (+)
G941893 NA other upstream 2562070 10245109 ~ 10245506 (+)
LOC118937463 NA other upstream 3952139 8845565 ~ 8855476 (+)
G940376 NA other upstream 4155055 8651504 ~ 8652993 (+)
G940313 NA other upstream 4266709 8532540 ~ 8540867 (+)
G944957 NA other downstream 510049 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 1187047 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 1277853 14154784 ~ 14202999 (+)
G946644 NA other downstream 1433074 14310575 ~ 14314318 (+)
G946643 NA other downstream 1440507 14318008 ~ 14318623 (+)

Expression


Co-expression Network