LOC110535289 (LOC106579598)


Basic Information

Item Value
gene id LOC110535289
gene name LOC106579598
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 12926611 ~ 12927478 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620193.2
AAAATCCCCCTCATTGACTGCACATAGTTCCTGAAGACTTCAACTAGCTGATGAACACTTGACATAAGAGAACGACATGCAAAAAGACAAGGTTTTAAGAATGAAAGTTGTCCTACTAATGCTGTCTTTGTGCCTCACACTGTCTGGGGCACAAGGTGAGGGGAACAGTTTATCTAACAGTCAGGTTGAAACCTGCTCCTTCATCAGTGAGCTGGCTGTGCTGAAGGAAAAACTGAACACCATGGATCAGAAGCTAGGAGCTGTGGAGACCAGGCTACAAGTCAGTGAGAGCCAGGTGGAAGAACTGAAAAGTGTGAACAAAGCTCAAGAAGAAGAACTGAAAACATTAAAGAAGGACATAGCCGCTGGTCAGCCAAAGGTGGCCTTCTCCGCAGCTCTAAGAACATCTGGTTCTGGTTACATAGGACCCTTCAACACTCACACACCCTTGCAGTACAAAAGAGTCTTCTCCAACTTCGGCAGTGGATACAACGCTGCTACAGGGGTCTTCACAGCCATGGTCAAAGGAGTGTATTACTTCCGCTACACCATGTTCTACAATGGAAACGCCAACGCTGTTGTGGCTTTGATGAAGAACGAGGAATTTCTCGTGTCCACATGGGATGCTACGTCAGGAAGTAGTGAAGATTCCGCCAGCAATGCTGCCATAGTGCAGCTGGAGGTGGGAGACAATGTCTTCGCCCGGCTCTCAGCTAACAGGAGAGTCTACGATGATGGTGGAAACTACAACACCTTCAGTGGTTTTCTGCTCTTCATCAACTAATATTAACAACAAGTTTACATTTCATTTGGCTGTAAACAGAAGTGTTTTCAGAAATTCtatcacagtaaaaaaaaattaaaaaaa

Function

NR:

description
complement C1q-like protein 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620193.2 True 868 mRNA 0.45 1 12926611 12927478

Neighbor

gene id symbol gene type direction distance location
LOC110535287 LOC106579593 coding upstream 49110 12807576 ~ 12877501 (+)
LOC110536550 LOC106579608 coding upstream 132239 12764626 ~ 12794372 (+)
LOC110535285 LOC106579590 coding upstream 526522 12393373 ~ 12400089 (+)
LOC110535284 LOC106579588 coding upstream 542325 12370078 ~ 12384286 (+)
rmc1 mic1 coding upstream 631564 12283881 ~ 12295047 (+)
LOC110535293 LOC106579603 coding downstream 118828 13046306 ~ 13094507 (+)
dpp6a LOC106579565 coding downstream 519206 13446684 ~ 13814449 (+)
LOC118937473 NA coding downstream 789249 13716727 ~ 13716783 (+)
mcur1 mcur1 coding downstream 896506 13823984 ~ 13848726 (+)
LOC110535301 LOC106579559 coding downstream 949323 13876801 ~ 13883235 (+)
G944609 NA non-coding upstream 7349 12912440 ~ 12919262 (+)
G944560 NA non-coding upstream 24436 12900666 ~ 12902175 (+)
G944513 NA non-coding upstream 186387 12739981 ~ 12740224 (+)
G944512 NA non-coding upstream 187253 12738871 ~ 12739358 (+)
G944423 NA non-coding upstream 299806 12626600 ~ 12626805 (+)
G944679 NA non-coding downstream 99709 13027187 ~ 13121153 (+)
G944714 NA non-coding downstream 156914 13084392 ~ 13084665 (+)
G944675 LOC106579599 non-coding downstream 189144 13116622 ~ 13118471 (+)
G944876 NA non-coding downstream 360946 13288424 ~ 13291231 (+)
G945040 NA non-coding downstream 556195 13483673 ~ 13483980 (+)
G942702 NA other upstream 1815275 11110726 ~ 11111336 (+)
G941893 NA other upstream 2681105 10245109 ~ 10245506 (+)
LOC118937463 NA other upstream 4071174 8845565 ~ 8855476 (+)
G940376 NA other upstream 4274090 8651504 ~ 8652993 (+)
G940313 NA other upstream 4385744 8532540 ~ 8540867 (+)
G944957 NA other downstream 460072 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 1137070 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 1227876 14154784 ~ 14202999 (+)
G946644 NA other downstream 1383097 14310575 ~ 14314318 (+)
G946643 NA other downstream 1390530 14318008 ~ 14318623 (+)

Expression


Co-expression Network