LOC110535293 (LOC106579603)


Basic Information

Item Value
gene id LOC110535293
gene name LOC106579603
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 13046306 ~ 13094507 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620196.2
ATCTCCACCCTTTTTTAATATCTCTGACCAAACTCAGAAAAGAGTAGCTAGGTTGCTAGCGTTAGCTATAGCTATTGACTTGGTGCATTGGGTTGTTTTAAACCAAAGAGAATGGCCAAGCAGCTAGAAACGGGTTTGGATGGAATGTAGTTTTTTGTGTCACGGGGGTGTTTGTTGTGTAGTGTACTGACCGCGGTGGGGAGGTATGACTTGGGTGTTGACGCAGTACCTAAACCAACGGAATTTGCAATACCAGCATAGACAAATTGGGATGTCAATGAAGCAAGTGCATCGGGCCTGAGCACGGAGCGCCGACGATGCTAGGGCTACCATGGGTAGCGTCACACTGCGCTATTTCTGCTATGGCTGCCTCTTCACCTCCGTGACCTGGTCCGTCCTACTCTTCCTCTACTTCAGCCTCGGCCAAGACGGCGGCCGGCCCACCTTCAGGTATGTGCCCATCCAGGGGCCCCAGGCCCACCGCTTCCAACCCCGTTTCTCCAAGGGCCCTGGAGGAGGGCCAGAACATGGCATTACGGCAGTCCCTGCAGCTGGAGCAGGAGGCAACAAGCAGGCCGATCTCTCTCCTGAGATGGGAATGATTTTTAATGAGCAAGACCAGGAGGTGCGTGACATGGGCTATCACAAGCATGCTTTCAACGTACTGATCAGCAATCGACTAGGCTACCACAGAGACCTCCCCGACACTAGGGACGACAAgTGCCGAGACATGATCTATCCTCTGTCCCTCCCCGCGGCCAGCGTAGTGATCTGCTTCTTCAACGAGGCGTTCTCCGCCCTCCTGCGCACCGTGCACAGCGTCCTGGATCGCACGCCGGCCTACCTGCTGCATGAGATTATACTGGTGGATGACAGCAGTGAACTAGCTGATCTGAAGGAAGATCTTGACAGCTATGTCCAGCAGCACAAACTCCAGGTCAAGGTCAAGGTGGTCCGCaacgagaagagagagggattgatCAGAGGGAGGATGATAGGTGCTTCTCATGCCACCGGGGAGGTGCTTGTGTTCCTGGACAGCCACTGTGAGGTGAATGAGGCGTGGCTGCAGCCCCTGCTGGCTCCCATCCAGCGCGACCACAAAACAGTGGTGTGTCCCGTCATCGACATTATTAGCGCTGACACCCTGGCCTATAGCCCCTCCCCCATTGTCCGGGGGGGCTTCAACTGGGGGCTGCACTTCAAGTGGGACACCGTGCCCGCCTCAGAACTCAACAGTCCCGACGGAGCAGTGGGCAGCATCAGGTCTCCCACCATGGCAGGTGGTCTGTTTGCCATGGACAGGAAGTACTTTAACGAGCTCGGCCAATACGACAGTGGCATGGACATCTGGGGTGGTGAGAACCTTGAGATCTCCTTCCGGATCTGGATGTGTGGTGGCCAGCTCCTGATCATCCCCTGCGCGCGGGTGGGTCATATATTCCGTAAACGCCGGCCTTACGGGTCACCCGGAGGTCAGGACACCATGGCCCACAACTCCCTGCGATTGGCCCACGTATGGATGGATGAATACAAGGAGCAGTACTTAAACCTGCGGCCAGAACTCCGGGAACGTGCCTACGGTGACATCAGCGAGCGGCAGGCGGTGCGCCAACGGCTGCAGTGTCGCTCTTTCAAGTGGTACCTGGACACCATCTACCCCGAGATGCAGGTTGCCTCGCCCCACAACAAGCCCCAGCAGCCTGTGTTCGTCAACAAGGGCCTCCGCCGGCCAAAAGTGTTGCAGAGAGGCCGGCTGCGGAACCTGAAGGCTGACAAGTGTCTGGTGGCCCAGGGGAGGTCCACACAGAAGGGGGGTGCCGTGGTGCTGAGGTCCTGTGACACTCACAACCCAGAACAGgAGTGGGCCTATGATGAGGAGCACGAGTTGATCCTAGCCGGCCTGCTGTGTCTGGACATGTCGGAGATCCGCTCGTCTGACCCACCCCGCCTCATGAAGTGTCACGGCTCAGGGGGCTCCCAACAGTGGACCCTGGGGAAAAGCAACCGGCTGTATCAAGTCTCAGTGGGCCAATGCCTGGCCGTGGTCGACCCAATCAGCCCCAAGGGATATGTTGCCACGGCAATCTGCAACGGCTCTCAGTCCCAGCAGTGGCAGTTGGAGGGCTGATGTTGATACCCCAcgactagttacataccagacgcTGACTGCCCCCCCCCCTGGATGGGGGGAGTACTGCATGCTGCTACAACTAAGCAAGAGAGGGATGGAACTAATTATACGGACTGTGTTCTTGAAGAAATTAATGCTGTTTATCTTCAGAACTGCTTCCGGCCTGACGTGCACAAAGTATGGAGCTCTAAGTGGGTACGCTATATGTACTGTAGTCATTCGTATGCCTGACTTCCCCCTCTTGAAAATTTGTATTCCATGTCCTGTTTTAGATATTATTTTTTTACGATGCATCATGcaaattatttttaatttaatCCAATTTGCACAGCACTCTTGCATTAGACAATTCAGAGAAATGTTTAATCTTGTATAAGTCCCAAACAAGTGTTTTACTAAGAACAATGGACTGCCAGTGTTAGAGGTTTTAGAGTTAAATTGCATTTTATTCTGTACTTATTACAATCTGATATTAATTGCTATGACATACAGTACTGCATGTTATTTAGTTGACATTTCTTTGGGAGTATCTTTCTGTTGTACAAATATTTTGATCACTGGAGTTTGTTTTTGAAGTTATGTATTTTTCATGCCCTTGAAATGTGCAAGGCAACTTCCTTAATACTGTATTGATAGGCTACACTGTGTTAGCTCTACATCAGGTATATTGACCAAGTGATGGATAGTTTGTGCAGTCTACGTAAATCATGTCGAATAGGTTAAATAGAAATGGAATTTCCTACAGTATCTAGCGGTCTTGGGTCATGCCCACAACACTAGCAAAATCATCCATACTCACGGCCTGCTCTGCACTGTACTGGTGAGCTATGATGGTTGAACAAGATCTGGCAATGATTTGAGTTCTAGTTTTTCCCTTATCCAAATGTCATTTCTTAAGTTATGCGGTGCAGTTTTGTATTAGTTATTCTCTTTTGCAATGAGGCAACCAACTAAATGTTTATTTGAAGTATGAACATCCCTTTTGACACATTTACAATTTGATTAAAAGTCTTTGTCAGA

Function

NR:

description
polypeptide N-acetylgalactosaminyltransferase 11-like

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620196.2 True 3154 mRNA 0.51 12 13046306 13094507

Neighbor

gene id symbol gene type direction distance location
LOC110535289 LOC106579598 coding upstream 118828 12926611 ~ 12927478 (+)
LOC110535287 LOC106579593 coding upstream 168805 12807576 ~ 12877501 (+)
LOC110536550 LOC106579608 coding upstream 251934 12764626 ~ 12794372 (+)
LOC110535285 LOC106579590 coding upstream 646217 12393373 ~ 12400089 (+)
LOC110535284 LOC106579588 coding upstream 662020 12370078 ~ 12384286 (+)
dpp6a LOC106579565 coding downstream 352177 13446684 ~ 13814449 (+)
LOC118937473 NA coding downstream 622220 13716727 ~ 13716783 (+)
mcur1 mcur1 coding downstream 729477 13823984 ~ 13848726 (+)
LOC110535301 LOC106579559 coding downstream 782294 13876801 ~ 13883235 (+)
LOC110535303 nebl coding downstream 1026893 14121400 ~ 14207555 (+)
G944609 NA non-coding upstream 127044 12912440 ~ 12919262 (+)
G944560 NA non-coding upstream 144131 12900666 ~ 12902175 (+)
G944513 NA non-coding upstream 306082 12739981 ~ 12740224 (+)
G944512 NA non-coding upstream 306948 12738871 ~ 12739358 (+)
G944423 NA non-coding upstream 419501 12626600 ~ 12626805 (+)
G944675 LOC106579599 non-coding downstream 22115 13116622 ~ 13118471 (+)
G944876 NA non-coding downstream 193917 13288424 ~ 13291231 (+)
G945040 NA non-coding downstream 389166 13483673 ~ 13483980 (+)
G945043 NA non-coding downstream 393971 13488478 ~ 13488711 (+)
G945046 NA non-coding downstream 396713 13491220 ~ 13491487 (+)
G942702 NA other upstream 1934970 11110726 ~ 11111336 (+)
G941893 NA other upstream 2800800 10245109 ~ 10245506 (+)
LOC118937463 NA other upstream 4190869 8845565 ~ 8855476 (+)
G940376 NA other upstream 4393785 8651504 ~ 8652993 (+)
G940313 NA other upstream 4505439 8532540 ~ 8540867 (+)
G944957 NA other downstream 293043 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 970041 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 1060847 14154784 ~ 14202999 (+)
G946644 NA other downstream 1216068 14310575 ~ 14314318 (+)
G946643 NA other downstream 1223501 14318008 ~ 14318623 (+)

Expression


Co-expression Network