LOC110535297 (LOC106579566)


Basic Information

Item Value
gene id LOC110535297
gene name LOC106579566
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 13814124 ~ 13817469 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620203.2
ggctaaaaACTGGATGTGCCATTCACGCGTTTAGTAAAAACAGGTTAGCCACAAGTTATAAACTTCGCCTATTTCTacgtgattttaaacctaacctcaacacactgctaaccttatgcctaaccccaAATTAAGACCATAAAtaatttttgttttcatacatttttacgatATGCCAATTTGGACTTTGTGCCTGTGCTATTTAGTGGAAACGTTAAACAAAAAATGAAACTATGCAACCGACTCTTCAACCGCAACCTATATCCTTGTTTGCATTGTCACCATCGAGACCTCTTTAGACGGAGATAATCACATTTTTAAGAATAAATATTTGATCCAGGCATTGCGGAAACACGTTTAGAGAATGAGCAATTTCGCCCTACTGTTTTATTTCGCCTTTTCAATTTTGTCCTCCTCGTGCACAGTGCCGAAGAAGAGGAACGACATGCCGATAATCGGTGTCTTGGCTCAGGAGGTAGACTCACCTCAACCACAGAAGGCCTCTTATATAGCTGCATCGTATGTCAAGTTCCTGGAGTCTGCAGGAGCTAGAGTCGTCCCTGTGATGATAAATCAGACACTGGAAGAGTACAAAACACTGTTTAACTCCATTAATGGAATACTCTATCCTGGTGGTGATGCTAGCATCGTTTCATCTGGGTATGCGAACGCTGCTAGAATCTTTTACGAGCTTGCCATAGAGGCCAACTCGAGGGGGGACTATTTCCCTGTATGGGGTACCTGTCTTGGATTTGAGGAATTGACATACCTGACCAGCGGAAAGCAGCTTCTATCCAAAACCAATACCAGTGGTGTGATGTTGCCACTGGTTTTCACTAACGGATCCAGAGAGAGTAAGCTGTTCAAGGGCTTTCCAGCAGAGGTCCTGGATGCCTTGGCCTCTGAGCCAATCACTGAAAACTCTCATCAATTGAGTCTCACTCTGGAGAGTTATAACAACAATACAGACCTTAGGAAGTTCTACAAAGTCTTGACTACAAACAGTGATGGGAAAACAGAGTTTGTGTCAACTATGGAAGCATACGGTTTCCCCATCTATGGAACCCAGTGGCACCCTGAAAAGAATGCATTTGAATGGACAAGGCCGTACATTCCACACTCGCCATCGGCTGTTAAGACCACTTTCTTTTTGGCTGATTTCGTGGTCAATGAAGCTAGAAAGAATTTTCACAAATTTGAGGATgaagaggtggagaagagagcACTGATATACAACTACAATCCTGTGTACACTGGAAACATTTTTGCCTTTGAACAAACATATTACTTTTGAGTATTGTTTTTGAATGGAGTGAGTGTCATTCAACACATTTATTTCAATCAATGTAAGCAACACTTATTGCTGTACAAATCAAACTTTTAATTTACAGAAATGTATGTTTTGGTAATGGTTTTACAAAGATGAAAGTGACTGATGACAATTAAGTTGTTTGAATGACTATGTACCACGTCTATGTTTTTGAACAAACCTAAAAGCATTTCACAATCTATCCAGACTGGCAAGGTAATGAGGACTTGTTCAGTAATAGAACCCAGAAGCTTTGTTTTGGCAGCTTGATTTCTCATCTCATTGTTTTACTATACAACAAGACATTTGGTTGATTTGAGTAAACGCTTGAGGATGCAtttttttttgtgtcttttacaATAAAGTGGATAAATTAA

Function

NR:

description
gamma-glutamyl hydrolase-like

GO:

id name namespace
GO:0006760 folic acid-containing compound metabolic process biological_process
GO:0006541 glutamine metabolic process biological_process
GO:0034722 gamma-glutamyl-peptidase activity molecular_function

KEGG:

id description
K01307 GGH; gamma-glutamyl hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620203.2 True 1686 mRNA 0.40 9 13814124 13817469
Loading

Neighbor

gene id symbol gene type direction distance location
xrcc2 LOC106579578 coding downstream 476740 13326871 ~ 13337384 (-)
LOC110535292 LOC106579599 coding downstream 494853 13094560 ~ 13319271 (-)
LOC110535288 LOC106579597 coding downstream 787029 12896494 ~ 13027095 (-)
LOC110535290 LOC106579596 coding downstream 921167 12882858 ~ 12892957 (-)
hs6st1b LOC106579591 coding downstream 1271866 12454097 ~ 12542258 (-)
LOC110536603 nme8 coding upstream 1353 13818822 ~ 13823897 (-)
LOC110535299 LOC106579561 coding upstream 37702 13855171 ~ 13860831 (-)
prkdc prkdc coding upstream 66429 13883898 ~ 13927461 (-)
LOC118937437 NA coding upstream 110340 13927809 ~ 13929694 (-)
LOC118937317 LOC106590264 coding upstream 184350 14001819 ~ 14010480 (-)
G946101 NA non-coding downstream 187577 13625905 ~ 13626547 (-)
G945991 NA non-coding downstream 316450 13497369 ~ 13497674 (-)
G945986 NA non-coding downstream 324148 13489775 ~ 13489976 (-)
G945912 NA non-coding downstream 464154 13349760 ~ 13349970 (-)
G945827 NA non-coding downstream 599546 13214181 ~ 13214578 (-)
G946240 NA non-coding upstream 6976 13824445 ~ 13824648 (-)
G946243 NA non-coding upstream 9127 13826596 ~ 13826814 (-)
G946244 NA non-coding upstream 14925 13832394 ~ 13832606 (-)
G946248 NA non-coding upstream 21332 13838801 ~ 13839167 (-)
G946283 NA non-coding upstream 119309 13936778 ~ 13936990 (-)
G945345 LOC105027308 other downstream 1419986 12393397 ~ 12394138 (-)
LOC110536549 LOC106579607 other downstream 1455245 12348249 ~ 12366127 (-)
LOC110536548 LOC106579654 other downstream 2733607 11061866 ~ 11143146 (-)
G942483 LOC106590343 other downstream 3069447 10743314 ~ 10744677 (-)
G942454 NA other downstream 3171481 10639629 ~ 10642643 (-)
ly86 NA other upstream 495043 14308595 ~ 14315733 (-)
mtfr1 LOC106579534 other upstream 1066866 14884317 ~ 14897579 (-)
G947750 NA other upstream 1388962 15206431 ~ 15209597 (-)
G947894 LOC106579543 other upstream 1548481 15365950 ~ 15366301 (-)
pan3 pan3 other upstream 1633858 15439415 ~ 15455911 (-)

Expression

LOC110535297(LOC106579566) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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LOC110535297(LOC106579566) Expression in each Bioproject

Bar chart with 21 bars.
LOC110535297(LOC106579566) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network