Item | Value |
---|---|
gene id | prkdc |
gene name | prkdc |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048575.1 |
NCBI id | CM023229.2 |
chromosome length | 86280908 |
location | 13883898 ~ 13927461 (-) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
symbol | description |
---|---|
prkdc | Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within B cell differentiation; T cell receptor V(D)J recombination; and immunoglobulin heavy chain V-D-J recombination. Predicted to be located in nucleolus. Predicted to be active in nucleus. Is expressed in kidney and spleen. Used to study severe combined immunodeficiency. Human ortholog(s) of this gene implicated in immunodeficiency 26. Orthologous to human PRKDC (protein kinase, DNA-activated, catalytic subunit). |
description |
---|
DNA-dependent protein kinase catalytic subunit |
id | description |
---|---|
K06642 | PRKDC; DNA-dependent protein kinase catalytic subunit |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_021620207.2 | True | 13091 | mRNA | 0.52 | 86 | 13883898 | 13927461 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110535299 | LOC106579561 | coding | downstream | 23067 | 13855171 ~ 13860831 (-) |
LOC110536603 | nme8 | coding | downstream | 60001 | 13818822 ~ 13823897 (-) |
LOC110535297 | LOC106579566 | coding | downstream | 66429 | 13814124 ~ 13817469 (-) |
xrcc2 | LOC106579578 | coding | downstream | 546514 | 13326871 ~ 13337384 (-) |
LOC110535292 | LOC106579599 | coding | downstream | 564627 | 13094560 ~ 13319271 (-) |
LOC118937437 | NA | coding | upstream | 348 | 13927809 ~ 13929694 (-) |
LOC118937317 | LOC106590264 | coding | upstream | 74358 | 14001819 ~ 14010480 (-) |
LOC110535302 | ramp3 | coding | upstream | 137042 | 14064503 ~ 14098978 (-) |
LOC110535307 | rreb1 | coding | upstream | 299533 | 14226994 ~ 14297946 (-) |
ly86 | NA | coding | upstream | 381134 | 14308595 ~ 14315733 (-) |
G946248 | NA | non-coding | downstream | 44731 | 13838801 ~ 13839167 (-) |
G946244 | NA | non-coding | downstream | 51292 | 13832394 ~ 13832606 (-) |
G946243 | NA | non-coding | downstream | 57084 | 13826596 ~ 13826814 (-) |
G946240 | NA | non-coding | downstream | 59250 | 13824445 ~ 13824648 (-) |
G946101 | NA | non-coding | downstream | 257351 | 13625905 ~ 13626547 (-) |
G946283 | NA | non-coding | upstream | 9317 | 13936778 ~ 13936990 (-) |
G946352 | NA | non-coding | upstream | 63594 | 13991055 ~ 13991352 (-) |
G946464 | NA | non-coding | upstream | 88432 | 14015893 ~ 14016198 (-) |
G946466 | NA | non-coding | upstream | 90186 | 14017647 ~ 14018270 (-) |
G946477 | NA | non-coding | upstream | 106876 | 14034337 ~ 14034550 (-) |
G945345 | LOC105027308 | other | downstream | 1489760 | 12393397 ~ 12394138 (-) |
LOC110536549 | LOC106579607 | other | downstream | 1525019 | 12348249 ~ 12366127 (-) |
LOC110536548 | LOC106579654 | other | downstream | 2803381 | 11061866 ~ 11143146 (-) |
G942483 | LOC106590343 | other | downstream | 3139221 | 10743314 ~ 10744677 (-) |
G942454 | NA | other | downstream | 3241255 | 10639629 ~ 10642643 (-) |
mtfr1 | LOC106579534 | other | upstream | 956874 | 14884317 ~ 14897579 (-) |
G947750 | NA | other | upstream | 1278970 | 15206431 ~ 15209597 (-) |
G947894 | LOC106579543 | other | upstream | 1438489 | 15365950 ~ 15366301 (-) |
pan3 | pan3 | other | upstream | 1523866 | 15439415 ~ 15455911 (-) |