LOC110535303 (nebl)


Basic Information

Item Value
gene id LOC110535303
gene name nebl
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14121400 ~ 14207555 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620216.2
ACGCAGGAACATCATGTGGTCCTGGCTTGGCGCTGTCGCTGAATCAAGCAGCTTGGATCGTGGAAGGTGCTGTGTCACACAAGCAGCCACAGTTTACGTCTGTTCAATTGTAATGCGGCATCCACTCAGGACAGGATAGTGACTGTGCGAACTCTGAGAGACGCGCTACTTTGTTTATTTCTACCGACTTGACCTCGGGATGTGAAGTAAAACTGTTACCAGATTTCAAATAACTATTTTCACactaatacatttgatttattgtcGCGGGGAATAAGACGCATATTTGAAAATGAACCCTCCGTGTGCGCGCTGTGGGAAAATTGTCTATCCGACGGAGAAAGTCAACTGCCTTGATAAGAATTGGCATAAAGGATGCTTCCACTGCGAGGTTTGTAAGATGACTCTGAACATGAAGAACTACAAAGGCTACGATAAGAAGCCCTACTGCAATGCgcATTATCCGAAGCAGTCCTTCACCATTGTGACTGACACCCCAGAGAACCTGAGGCTGAGACATCAGAGTGAGTTACAGAGCCAGGTGAAATACAAAAAGGACTTTGAGGATAGCAAAGGCAGAGGCTTCAGCATTGTATCGGACACGCCAGAGCTGCAGAGACTGAGAAAGACACAGGAGCAGATCAGTAATGCAAAGTACCATGAGGACTTTGAGCGGACGAGGGGCCGAGGATGCACCCCAGTGATGGAGGACCAAAACATGGAGAGAATGCACCACCGGAACAACCTGATGATGAGCGAGGCAGCCTACAAGGGAGTACACCATCAGGTGGTAGAGATGGACAGGAGACCTGGAGGCATCATCGTAGCTCCTGTGCTTCCTGGGGCGTACCATCAGAGTGCCCAGCCGCAACAGCCGGGGTACGGCTACATGCACCAGACCAGCATGTCCTCTGTGAGGTCTCAGCAGTCCCCCCCATCTGTCACCATGAGAGTTTACCGGGCGCTCTACGACTACGCAGCGCAGGACCACGACGAGGTGTCCTTCCGCGACGGTGATGTCATCGTCAACGCTCAGCCCATCGATGAGGGCTGGATGTACGGCACCGTTCAGAGGACCGGCAAATCAGGCATGCTCCCTGCCAACTACGTGGAGTGCTTCAACTAAGGGCCGCATCGCAATAGTCTTTAAGcgatttcctttcctctctccttgtctcctctcctccatcagcaCTGATGTGAAAACAAAAAGATTTGATAGGCGGAAGGGATAAGGCGGACTGGATGCCTACTGGGAAATTGACTTCCACCAGTTCTTTTAATTTCATTTCAGTACagttgaaggagaggagatgaggaaaggaggCCATTCTAGATTATTGAAATGCACCCAAGGGGCTAGCCTTACCATGGTTTGGTGGAGTCCTCTCCCCATGTGTCTGTTTGAAGTCTGGTCCTGGAGGCCTACTGTACATGAGCAGAGATAAAGGAACTGGGTGGTGTTGTTCAGTTTACTCTGTCTAGACTACAGACCCAAACTATCATAGCTACTGTACATTACCTGCTGAAAATGGTCATGGAAAAGTGTATCATTTAATAATACGTTTTGCTTTTGATTTAATTTAAAGCATTGGTGGCTTGTCCCACGTGAACAGttaatgaaaatatatatataattcaatCAGAGCATTGTAACCCTCAAATAGACAACATTTAGCCGACAAAAAATGACCTATTCAATGGAATACATTTACCACTTTCTGGGAGAAGTCGAAAACATCATGATTCCCACACTTGAAACCACATTTGAATTCGTTAAGCAGTTTCTCATTTTTTCACACCAACGTTGTGTTCCAAACGTGCATTCTTGCAGCACAAGACCAATAATGTTTTCGAATTATCCTGGAAAAGTGGTTAGTGGGTTTGCTTGAATAGCGCCCAACCAGTTTCCAGCCCCGGAATAGGGAGGGACCCGCTTTCTTCTTGTACTCCTTTGTATTTCAATTATTATATTTTGCATTTGGACATCAATACTAACTTTGTTTCATGTACAAATtaggggagagggagtgaaggagaaatGACATTTTCAGGACAATCCTGAGTGATTGCCAGACAGTCAGCTGTTTAACTTATGTTATATCATTAACACGCAGCTTCATTCTGTTTCGGTCTGATGACATAAAGGTTTAAACCAGCTCCACAAGTAAATATAGTTGATACAAACTCTAATTGAGTCACACCATCTCACCTCTTGCTTTGAGTTCAGTGGAGTTTTTACATCTCAAATACCAGTTTAGCCTCACACAGGCTTAATTAGATTATGTCCTCTTCTctaactagcaacatggttgtCATATGCTGCCATCTAAACAGTGTCAAGTAAGAATGGTAAATGAAGTTGGATTGTAAATCTTAAGATTTCTAAACTATTGTGAACACTTGATTCATAAGCTCCTATAAGAAAAACACTAATGACAGTACACTCTTGGAAAGAAggctccaaaagggttctttggctttcccaataggagaacccttttttggttccaggtagaaccctttttgtttccaggtaaaaaccctttttggtttcaggtagaatgtagaatggtagaatggtagaatggtTTATAATATCTTAAGGCATGCACACTATTGTGACCATTCAAGGACTTCATTTCTGGGTACATGGTAGCTGGggattctctctttactgtggtTTTGTACATTACATTTTATTACTGAAAGTGGTAACAAATGAAAATGTTGTGAAATGCTAATATTTATTGGCCTTTAAGAGACAATAACGGAACAGCAAGAAACCTCAAGCTTGGTGTGTTGCTTATTCAATTCATAAAGCCTTTTTTGTCCAAAGGTTTTTCTTCTAGtagttccatttttttttatgtctctctAAAAAATGTTTACTCAGTTTGTACGCCAACACCGAGTTTTATTGAGGTGTCACTTTTTCCTCAGTTAACCATTTGTTACATTTTTGGGGGTCATTAATTGCAGTGTGTCACGAGAGTAAAATAAAAATCTTTGTCGACAA

Function

symbol description
nebl Predicted to enable actin filament binding activity. Predicted to be active in focal adhesion. Is expressed in heart. Human ortholog(s) of this gene implicated in dilated cardiomyopathy. Orthologous to human NEBL (nebulette).

NR:

description
LIM zinc-binding domain-containing Nebulette-like

GO: NA

KEGG:

id description
K24420 LASP1; LIM and SH3 domain protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620216.2 True 3019 mRNA 0.43 7 14121400 14207555

Neighbor

gene id symbol gene type direction distance location
LOC110535301 LOC106579559 coding upstream 238165 13876801 ~ 13883235 (+)
mcur1 mcur1 coding upstream 272674 13823984 ~ 13848726 (+)
dpp6a LOC106579565 coding upstream 306951 13446684 ~ 13814449 (+)
LOC118937473 NA coding upstream 404617 13716727 ~ 13716783 (+)
LOC110535293 LOC106579603 coding upstream 1026893 13046306 ~ 13094507 (+)
LOC118937467 NA coding downstream 1595 14209150 ~ 14210346 (+)
ssr1 ssr1 coding downstream 4860 14212415 ~ 14220500 (+)
LOC118936448 NA coding downstream 111187 14318742 ~ 14321570 (+)
LOC110536553 LOC106567469 coding downstream 114237 14321792 ~ 14329490 (+)
oplah oplah coding downstream 132582 14340137 ~ 14361493 (+)
G946549 NA non-coding upstream 6833 14114083 ~ 14114567 (+)
G946545 NA non-coding upstream 8887 14112293 ~ 14112513 (+)
G946390 NA non-coding upstream 101640 14019324 ~ 14019760 (+)
G946377 NA non-coding upstream 114083 14006606 ~ 14007317 (+)
G946374 NA non-coding upstream 117923 14003180 ~ 14003477 (+)
G946616 NA non-coding downstream 32281 14239836 ~ 14240314 (+)
G946635 NA non-coding downstream 69484 14277039 ~ 14278140 (+)
G946663 NA non-coding downstream 93415 14300970 ~ 14301208 (+)
G946664 NA non-coding downstream 94112 14301667 ~ 14301920 (+)
G946646 NA non-coding downstream 100146 14307701 ~ 14309785 (+)
G946426 ramp3 other upstream 55531 14064548 ~ 14065869 (+)
G944957 NA other upstream 726525 13387550 ~ 13394875 (+)
G942702 NA other upstream 3010064 11110726 ~ 11111336 (+)
G941893 NA other upstream 3875894 10245109 ~ 10245506 (+)
LOC118937463 NA other upstream 5265963 8845565 ~ 8855476 (+)
G946644 NA other downstream 103020 14310575 ~ 14314318 (+)
G946643 NA other downstream 110453 14318008 ~ 14318623 (+)
G946642 LOC106590417 other downstream 111110 14318665 ~ 14329336 (+)
G946690 NA other downstream 192307 14399862 ~ 14400273 (+)
G946692 NA other downstream 193699 14401254 ~ 14401644 (+)

Expression


Co-expression Network