ssr1 (ssr1)


Basic Information

Item Value
gene id ssr1
gene name ssr1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14212415 ~ 14220500 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620218.2
aaatagtgGAATATTTTTGGGGGGTGAGTGTAGTGTTAGATGATAGggtatttgtttgtttatttattttttaaataaaagtgtTAGGGAGTTGTACTCGAGTCTAGTAGGTGGCAGTAATGCAACGTTTATTGGATGACAACCGCCGTTAAACCTAATCGAAGAAGAAGTAGCAGCTAGGCTTCAGGGAATCACTACGTTTCATAGTGAAGGAGGCTTACTGATTTCACATCAAAATGATGACATTTCTACCTAAACTGCTTTTGCTAGTATTACTAGCTTTCCCGGCAACGATTATCATGAAAGGGCCATTAGTGGCAGCCCAGGATGCTACTGAGGACGAGGAGGCAGCTGATGAAGATGCTGTGGATGATGTTGACGTGAACGCAGAGGATGAGGATGACGAGGCCGAAGTTGAAGATGATGAAAATACGGAATTGACAGaagaaaaagaggaagaggaggaggaagccgTAGGAGGAGATGTGAAAGCCTCCCCCAATGCTGACACCACCATCCTCTTCGtcaagggagatgACTTCCCAGCTAATGACATTGTGAAGTTCCTGATGGGCTTCACCAACAAAGGCAGCGACAACTTTGTGGTGGAGTCGCTGGACGCATCCTTCCGCTACCCGCAGGACTTCCAGTTTTACATCCAGAACTTCACAGCCCTGCAGCTGGGCATAGTGGTGCCTGCCGGGCGCCAGGCCACATTTGAGTACTCTTTCATCCCTGCCGAGCCCATGGGCGGGCGCCCCTTCGGCCTGGTTATCAACCTCAACTACAAGGACAGCAACGGTAACTTGTTCCAGGATGCTGTGTTCAACCAGACAGTGACCATCACCGAGAGAGAGGACGGACTGGATGGAGAGACGATCTTCATGTATGTGTTCCTGTCTGGTTTGGGTCTGCTGGTGGTGGTAGGCCTTCATCAGCTGCTGGAGTCCAGAAAGAGGAGGCGGCCAGCTGCCAAGGTGGAGATGGGCACTTCTAGCCACAACGATGTGGACATGAGCTGGATTCCCCAGGAGACCCTTAACCAGATCATGCAGAGTCGGCGAGACAAGGCTTCCCCCAGACGATCTCCCCGCAAGCGGACACAGAAGCGCTCTGCTGGTTCGGACGAGTGATGGGCCCCCACCGCCCAGTTCTGCCAGTCGCGCCTGACGCAGCCATAGCGCCAACCTTGTCAGCCGGGGAGAGGCAACAGCCTTCTCTCACCACAAAATCTCTTCACAAGAGGCCGGTTTCTACCGCTAAACTAGACAATAAATACCAAACGGacccattttttattttattttgttgagGCGTTATCACAGGTATTGTGATGAAGAAATGGTTTTGAGTAAGTTTTTGTGAAGATTAAAGTCCTGAAAGATGGAGGGGATATTAGAGCTAGATAAATGATAGTGGGGGATGATACACTGTTTTTTTCTTTTAGGTAATTTTTCGGTTGTGACTGTCTTTCATTTTTTTACCTGTGGATATCTTTTTGAGGCAGAATAGTTTGTTTTTGGTATCCCTGAGAGCCATGATTACACACACCttgtctgtaaaaaaatatatatatataatgttttgCACTGGTTAATATCTACACATTTGTGTTTCTGTCACATTGTTCTCTGCTGCTTCGTGGCACAGAGGATGGCCGGCTTCGAATCTTGTCATTTGAAGTGCACTGCAATGTTCGGCCATCTTTCACGGCTTCTATGATTCGGTGAAGACATGAGGACATGGTAAACGGTCTTCTTTTGTCTTCAATGTGcctgtaaaacttttttttttaaacaaacatgTTTTGTGTCATTTACTGTAAATTTGCATTCTTTATATTCCAAGGCTTGATTTATTTCATCTACACCTATGAATTaagtatttaattttttttatctgaGGATCTGAATAcagcactggtgtgtgtgtgtgtgtgtgtatactgatgAGTGCCCTGCAATGCTAATTTAGTTTCTTGACTTGTCTGGGATAATTACTTGTGTGTTTTACAGGCACAGTACATTTACTACTGTACCACAAGGCCCCCCCCATTTCATAAACTTCTGAGAGGGGCTTTGGACTAACTGTTTGGCACTGACTgtcaaattttaaaaaacaaatgtttgCTAGTAAATCTTccactcccccccctccccccaaccaTCTTTCTGTTGTGTGATTCATGGAGCTTTTTAATGACCATTTGAGAATAGATGGATCCcaaataatccccccccccccccccctgtatatgAACTTGTAATGAAAACATATTgtagcaacaaacaaaaaaaacatttttacggCGCAGTATGAATGTGTTCATTTTGGACACTGGTGCAGCTTCATGTAGAAAACAGAAAATTAAAGTGGAGATGTATGTGCTATGtctttatttactgcagtgtgaACTAATACATATTTTGTCTTCACTCTT
>XM_021620219.2
agtgGAATATTTTTGGGGGGTGAGTGTAGTGTTAGATGATAGggtatttgtttgtttatttattttttaaataaaagtgtTAGGGAGTTGTACTCGAGTCTAGTAGGTGGCAGTAATGCAACGTTTATTGGATGACAACCGCCGTTAAACCTAATCGAAGAAGAAGTAGCAGCTAGGCTTCAGGGAATCACTACGTTTCATAGTGAAGGAGGCTTACTGATTTCACATCAAAATGATGACATTTCTACCTAAACTGCTTTTGCTAGTATTACTAGCTTTCCCGGCAACGATTATCATGAAAGGGCCATTAGTGGCAGCCCAGGATGCTACTGAGGACGAGGAGGCAGCTGATGAAGATGCTGTGGATGATGTTGACGTGAACGCAGAGGATGAGGATGACGAGGCCGAAGTTGAAGATGATGAAAATACGGAATTGACAGaagaaaaagaggaagaggaggaggaagccgTAGGAGGAGATGTGAAAGCCTCCCCCAATGCTGACACCACCATCCTCTTCGtcaagggagatgACTTCCCAGCTAATGACATTGTGAAGTTCCTGATGGGCTTCACCAACAAAGGCAGCGACAACTTTGTGGTGGAGTCGCTGGACGCATCCTTCCGCTACCCGCAGGACTTCCAGTTTTACATCCAGAACTTCACAGCCCTGCAGCTGGGCATAGTGGTGCCTGCCGGGCGCCAGGCCACATTTGAGTACTCTTTCATCCCTGCCGAGCCCATGGGCGGGCGCCCCTTCGGCCTGGTTATCAACCTCAACTACAAGGACAGCAACGGTAACTTGTTCCAGGATGCTGTGTTCAACCAGACAGTGACCATCACCGAGAGAGAGGACGGACTGGATGGAGAGACGATCTTCATGTATGTGTTCCTGTCTGGTTTGGGTCTGCTGGTGGTGGTAGGCCTTCATCAGCTGCTGGAGTCCAGAAAGAGGAGGCGGCCAGCTGCCAAGGTGGAGATGGGCACTTCTAGCCACAACGATGTGGACATGAGCTGGATTCCCCAGGAGACCCTTAACCAGATCAACAAGGCTTCCCCCAGACGATCTCCCCGCAAGCGGACACAGAAGCGCTCTGCTGGTTCGGACGAGTGATGGGCCCCCACCGCCCAGTTCTGCCAGTCGCGCCTGACGCAGCCATAGCGCCAACCTTGTCAGCCGGGGAGAGGCAACAGCCTTCTCTCACCACAAAATCTCTTCACAAGAGGCCGGTTTCTACCGCTAAACTAGACAATAAATACCAAACGGacccattttttattttattttgttgagGCGTTATCACAGGTATTGTGATGAAGAAATGGTTTTGAGTAAGTTTTTGTGAAGATTAAAGTCCTGAAAGATGGAGGGGATATTAGAGCTAGATAAATGATAGTGGGGGATGATACACTGTTTTTTTCTTTTAGGTAATTTTTCGGTTGTGACTGTCTTTCATTTTTTTACCTGTGGATATCTTTTTGAGGCAGAATAGTTTGTTTTTGGTATCCCTGAGAGCCATGATTACACACACCttgtctgtaaaaaaatatatatatataatgttttgCACTGGTTAATATCTACACATTTGTGTTTCTGTCACATTGTTCTCTGCTGCTTCGTGGCACAGAGGATGGCCGGCTTCGAATCTTGTCATTTGAAGTGCACTGCAATGTTCGGCCATCTTTCACGGCTTCTATGATTCGGTGAAGACATGAGGACATGGTAAACGGTCTTCTTTTGTCTTCAATGTGcctgtaaaacttttttttttaaacaaacatgTTTTGTGTCATTTACTGTAAATTTGCATTCTTTATATTCCAAGGCTTGATTTATTTCATCTACACCTATGAATTaagtatttaattttttttatctgaGGATCTGAATAcagcactggtgtgtgtgtgtgtgtgtgtatactgatgAGTGCCCTGCAATGCTAATTTAGTTTCTTGACTTGTCTGGGATAATTACTTGTGTGTTTTACAGGCACAGTACATTTACTACTGTACCACAAGGCCCCCCCCATTTCATAAACTTCTGAGAGGGGCTTTGGACTAACTGTTTGGCACTGACTgtcaaattttaaaaaacaaatgtttgCTAGTAAATCTTccactcccccccctccccccaaccaTCTTTCTGTTGTGTGATTCATGGAGCTTTTTAATGACCATTTGAGAATAGATGGATCCcaaataatccccccccccccccccctgtatatgAACTTGTAATGAAAACATATTgtagcaacaaacaaaaaaaacatttttacggCGCAGTATGAATGTGTTCATTTTGGACACTGGTGCAGCTTCATGTAGAAAACAGAAAATTAAAGTGGAGATGTATGTGCTATGtctttatttactgcagtgtgaACTAATACATATTTTGTCTTCACTCTT

Function

symbol description
ssr1 Acts upstream of or within cellular response to estrogen stimulus. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including axis; fin; hatching gland; periderm; and polster. Orthologous to human SSR1 (signal sequence receptor subunit 1).

NR:

description
translocon-associated protein subunit alpha isoform X2

GO: NA

KEGG:

id description
K13249 SSR1; translocon-associated protein subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620218.2 False 2440 mRNA 0.44 9 14212415 14220500
XM_021620219.2 True 2421 mRNA 0.44 8 14212419 14220500

Neighbor

gene id symbol gene type direction distance location
LOC118937467 NA coding upstream 2069 14209150 ~ 14210346 (+)
LOC110535303 nebl coding upstream 4860 14121400 ~ 14207555 (+)
LOC110535304 NA coding upstream 9458 14154784 ~ 14202999 (+)
LOC110535301 LOC106579559 coding upstream 329180 13876801 ~ 13883235 (+)
mcur1 mcur1 coding upstream 363689 13823984 ~ 13848726 (+)
LOC118936448 NA coding downstream 98242 14318742 ~ 14321570 (+)
LOC110536553 LOC106567469 coding downstream 101292 14321792 ~ 14329490 (+)
oplah oplah coding downstream 119637 14340137 ~ 14361493 (+)
LOC110535311 LOC106579551 coding downstream 152133 14372633 ~ 14394906 (+)
si:ch211-217a12.1 LOC106579549 coding downstream 185510 14406010 ~ 14421353 (+)
G946549 NA non-coding upstream 97848 14114083 ~ 14114567 (+)
G946545 NA non-coding upstream 99902 14112293 ~ 14112513 (+)
G946390 NA non-coding upstream 192655 14019324 ~ 14019760 (+)
G946377 NA non-coding upstream 205098 14006606 ~ 14007317 (+)
G946374 NA non-coding upstream 208938 14003180 ~ 14003477 (+)
G946616 NA non-coding downstream 19336 14239836 ~ 14240314 (+)
G946635 NA non-coding downstream 56539 14277039 ~ 14278140 (+)
G946663 NA non-coding downstream 80470 14300970 ~ 14301208 (+)
G946664 NA non-coding downstream 81167 14301667 ~ 14301920 (+)
G946646 NA non-coding downstream 87201 14307701 ~ 14309785 (+)
G946426 ramp3 other upstream 146546 14064548 ~ 14065869 (+)
G944957 NA other upstream 817540 13387550 ~ 13394875 (+)
G942702 NA other upstream 3101079 11110726 ~ 11111336 (+)
G941893 NA other upstream 3966909 10245109 ~ 10245506 (+)
G946644 NA other downstream 90075 14310575 ~ 14314318 (+)
G946643 NA other downstream 97508 14318008 ~ 14318623 (+)
G946642 LOC106590417 other downstream 98165 14318665 ~ 14329336 (+)
G946690 NA other downstream 179362 14399862 ~ 14400273 (+)
G946692 NA other downstream 180754 14401254 ~ 14401644 (+)

Expression


Co-expression Network