LOC118936448


Basic Information

Item Value
gene id LOC118936448
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14318742 ~ 14321570 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034574.1
tctgtgttgttgtatgtgtcgaactgctatgctttatcttggccaggtcgcagttgcaaaggagaatttgttctcaactagcctacctggttaaataaaggtgaaataaaaataataaaaatgctTAATTTGACAGGCATTCATTGAACTGTCAGTTATTTGAAACAGATCATTAATAGTAAAACAAATAGTTGAACTACATTCTTGTCATCAAACATTCCCGCTAGGTTTATATAGGCTGTACATTACTGCTATGCTGTCCAATCTCTTCCAAAAACAGCTCCAACATGACATCAGTACAAGAACTACAGTCATTATACTACCAGGGAACAAACACTGGTAGGTGGCCAATTTCAGTGTGATAAAATGAGCTTCACTTTTATTCTCTCATGTCTTCCAGTCCATTGCAGAGTTTGACCTGAGGTGCTACACTATGAGGTGAAGTCGGCAAAATGCCACGAGGTGAGTTTGGCCATGCCCCCTCATGACCACATCAGCTTCAACTTCCACTGCCAGCAGGAGGCTCAGGAGTGGGCCACCGTGGTGATGTCATCACTCAGAGAGGCACATAGGGGTCAGTCACcacctacagtggcaagaaaaaCCTTCCTGTGCCCTAATAACCCGagtcctctcctcgtctcctgacccctcagtggCAGCCAGCCCTCCCACCGAtgacagacagctgcctctggAGGCCTTACCACGCACAGAGGAGATGTGTGCTGAACTGACCAG

Function

NR:

description
PREDICTED: ranBP-type and C3HC4-type zinc finger-containing protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034574.1 True 741 mRNA 0.46 3 14318742 14321570

Neighbor

gene id symbol gene type direction distance location
ssr1 ssr1 coding upstream 98242 14212415 ~ 14220500 (+)
LOC118937467 NA coding upstream 108396 14209150 ~ 14210346 (+)
LOC110535303 nebl coding upstream 111187 14121400 ~ 14207555 (+)
LOC110535304 NA coding upstream 115785 14154784 ~ 14202999 (+)
LOC110535301 LOC106579559 coding upstream 435507 13876801 ~ 13883235 (+)
LOC110536553 LOC106567469 coding downstream 222 14321792 ~ 14329490 (+)
oplah oplah coding downstream 18567 14340137 ~ 14361493 (+)
LOC110535311 LOC106579551 coding downstream 51063 14372633 ~ 14394906 (+)
si:ch211-217a12.1 LOC106579549 coding downstream 84440 14406010 ~ 14421353 (+)
emc9 LOC106579550 coding downstream 103895 14425465 ~ 14433808 (+)
G946646 NA non-coding upstream 8957 14307701 ~ 14309785 (+)
G946664 NA non-coding upstream 16822 14301667 ~ 14301920 (+)
G946663 NA non-coding upstream 17534 14300970 ~ 14301208 (+)
G946635 NA non-coding upstream 40602 14277039 ~ 14278140 (+)
G946616 NA non-coding upstream 78428 14239836 ~ 14240314 (+)
G946649 NA non-coding downstream 12765 14334335 ~ 14336622 (+)
G946691 NA non-coding downstream 79234 14400804 ~ 14401022 (+)
G946694 NA non-coding downstream 81370 14402940 ~ 14403169 (+)
G946696 NA non-coding downstream 84838 14406408 ~ 14406709 (+)
G946678 NA non-coding downstream 121184 14442754 ~ 14444395 (+)
G946643 NA other upstream 119 14318008 ~ 14318623 (+)
G946644 NA other upstream 4424 14310575 ~ 14314318 (+)
G946426 ramp3 other upstream 252873 14064548 ~ 14065869 (+)
G944957 NA other upstream 923867 13387550 ~ 13394875 (+)
G946690 NA other downstream 78292 14399862 ~ 14400273 (+)
G946692 NA other downstream 79684 14401254 ~ 14401644 (+)
G946999 NA other downstream 260973 14582543 ~ 14584049 (+)
LOC110535322 LOC106579526 other downstream 344156 14665667 ~ 14715423 (+)
G947301 LOC106590396 other downstream 565044 14886614 ~ 14887282 (+)

Expression


Co-expression Network