Gene
RNA
| Item | Value |
|---|---|
| gene id | csn5 |
| gene name | csn5 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048575.1 |
| NCBI id | CM023229.2 |
| chromosome length | 86280908 |
| location | 14638259 ~ 14642624 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| csn5 | Enables NEDD8-specific protease activity. Involved in several processes, including gamete generation; neurogenesis; and regulation of cellular protein catabolic process. Located in cytoplasm and nuclear periphery. Part of COP9 signalosome. Is expressed in adult head; embryonic/larval midgut; and organism. Orthologous to human COPS5 (COP9 signalosome subunit 5). |
| description |
|---|
| COP9 signalosome complex subunit 5 |
| id | name | namespace |
|---|---|---|
| GO:0006508 | proteolysis | biological_process |
| GO:0048471 | perinuclear region of cytoplasm | cellular_component |
| GO:0008180 | COP9 signalosome | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0008237 | metallopeptidase activity | molecular_function |
| id | description |
|---|---|
| K09613 | COPS5, CSN5; COP9 signalosome complex subunit 5 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| NM_001165048.1 | True | 1342 | mRNA | 0.46 | 8 | 14638259 | 14642624 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110535318 | LOC106579520 | coding | upstream | 25684 | 14515936 ~ 14612575 (+) |
| cpa6 | cpa6 | coding | upstream | 125049 | 14468990 ~ 14513210 (+) |
| emc9 | LOC106579550 | coding | upstream | 204451 | 14425465 ~ 14433808 (+) |
| si:ch211-217a12.1 | LOC106579549 | coding | upstream | 216906 | 14406010 ~ 14421353 (+) |
| LOC110535311 | LOC106579551 | coding | upstream | 243353 | 14372633 ~ 14394906 (+) |
| ppp1r42 | ppp1r42 | coding | downstream | 3018 | 14645642 ~ 14659439 (+) |
| LOC110535321 | LOC106579524 | coding | downstream | 17661 | 14660285 ~ 14663560 (+) |
| LOC110535322 | LOC106579526 | coding | downstream | 23043 | 14665667 ~ 14715423 (+) |
| crf | crf | coding | downstream | 150571 | 14793195 ~ 14794694 (+) |
| trnay-gua-3 | NA | coding | downstream | 188152 | 14830776 ~ 14830861 (+) |
| G946955 | LOC106579521 | non-coding | upstream | 23081 | 14613468 ~ 14615178 (+) |
| G946957 | NA | non-coding | upstream | 43231 | 14567193 ~ 14595028 (+) |
| G946998 | NA | non-coding | upstream | 56686 | 14580554 ~ 14581573 (+) |
| G946951 | NA | non-coding | upstream | 124432 | 14513621 ~ 14513827 (+) |
| G947048 | NA | non-coding | downstream | 53489 | 14696113 ~ 14696330 (+) |
| G947057 | NA | non-coding | downstream | 75824 | 14718448 ~ 14718683 (+) |
| G947059 | NA | non-coding | downstream | 79342 | 14721966 ~ 14722170 (+) |
| G947207 | NA | non-coding | downstream | 99727 | 14742351 ~ 14742560 (+) |
| G946999 | NA | other | upstream | 54210 | 14582543 ~ 14584049 (+) |
| G946692 | NA | other | upstream | 236615 | 14401254 ~ 14401644 (+) |
| G946690 | NA | other | upstream | 237986 | 14399862 ~ 14400273 (+) |
| G946642 | LOC106590417 | other | upstream | 308923 | 14318665 ~ 14329336 (+) |
| G946643 | NA | other | upstream | 319636 | 14318008 ~ 14318623 (+) |
| G947301 | LOC106590396 | other | downstream | 243990 | 14886614 ~ 14887282 (+) |
| spata13 | LOC106579541 | other | downstream | 642555 | 15285042 ~ 15320246 (+) |
| LOC110535338 | LOC106579503 | other | downstream | 795057 | 15375660 ~ 15478222 (+) |
| rnf6 | LOC106579512 | other | downstream | 945206 | 15587284 ~ 15593900 (+) |
