ppp1r42 (ppp1r42)


Basic Information

Item Value
gene id ppp1r42
gene name ppp1r42
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14645642 ~ 14659439 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934964.1
TTCCCAACAAGGATATCCACACACGAGTGTAAACTTTCACCTCATCTCACCCCACATCTTTAGCATTAGTCTCTTTTATCGCCAAATTACAAGGACATGTGCATATACTACAGTGCTAGTTCATGTGTTTCCCTTGTTCAGATGTTTCTGGTGGTTGTTCTGTGAGCGCTTTGCTGAAGCTGAGAAGGATCCACTCTGAAGCAGTGTCTGTAACGAGCCATCATGGTCCGCCTCACCATGGATCTGATTGCCAAATCCAGCAACCATTTCAAAAACAAGAGAAGCTACTCCCTCCCAAAGTACCTCAAGAAACTCACTCATCTGAACTTCTCCAACAGGAACATAGAGGACATTGACGATCTCTCCATGTGCAGAAATCTCACAGTCCTCTACCTGTACGACAATCAGATCAGCCAGATCTGCAACCTGGGTTTTGCCTCCAACCTCACTCACCTATACATGCAGAACAACAACATCACTCACATAGATAACCTCTCCGGCCTGCAGAAGCTCTCCAAACTGTACCTGGGGGGAAACAGCATCACGGTGGTGGAGGGGTTAGAGGAGCTGGGGGAGCTGAAGGAGCTCCACATGGAGGGCCAGAGACTCCCCAGTGGAGAGAAGCTGCTCTTTGACCCCAggactctcctctccctcgctGAATCTCTAGGTGTCTTGAATATCAATAAGAACAACATAGATGATGTCAGAGATCTTGCCGTTCTAAAGAAACTCACACATTTCTTTGCTGCAGACAACCAGCTACAGGACATGCAGGATATAGAGTTGGTGTTCAGCCAATGGCCTCAGCTGCATCGAATGGATTTGAGTGGAAATCCTGTGTGCCACAAACCCAAGTACAGAGACAGGCTGATAACTGTGTGCAGAAGCCTGAACGAACTTGATGGGAAGGAAATTAATGAGTTGTCCAGGCAGTTCCTGATTAACTGGAAAGCGTCGAAAGACGCCAAGAAAAAACTGAAAGATGAAAGAATCATGACAGGCCAGATCACCTATCCCTTTACTGCAGACTTCCACATGGGCCCCCATCCTTCATCCAAATATAACTATGCCAACGTCCTGGGAAAGAGGAATCCTCCGGGGTGTGGGAGACCCAGCAGGAAGGTCCGCTCAGAACACTCACAACTGGACAGCGCAGCAATGAGgCCACGGAACGTGAAGATCCCAGTGAGTGCGGGGCTGCTTAGTGATGTGGCCGACAATGCTAATGTCTGCGGCCTGTAAGACGGACATGCCAGCTCTGCTAACACACATTCACTCTGGTGACCCTCTCACATACAGTCTGGTgaccctctaacacacacacacataatatacacTCTGGTgaccctctaacacacacacacacataatatacacTCTGGTGACCCTCTCACATACACTCTGGTgaccctctaacacacacacacacacataatatacacTCTGGTgaccctctaacacacacacacacacataatatacacTCTGGTGACCCTCTCACATACACTCTGGtgaccctctcacacacacacacacacacataatatacacTCTGGTGACCCTCTCACGCCTAAACTTTACCTTACACATAACACATagccagtgcttgacttgggcaggagctcactagAGCTGAGTACCAGCACCTAAAATGTTCTACTGATTGAGCTCCTGCatctcttatagaatattaactAGAAACTATTGTGGAACTTCTGCAACTAAATATAAACAGTTCCCGGGACCCAAAATGATTACCGGCACCTATtccagtccaagtcaagcactgcacaTAACCTCCCACTGCTATCACCACACATCAGGGGTGGACCTGACCCCTGACACACTCAATACGAAAGAGTCTACACTATGGTCTGTCACTGTCAGGGACTGATGGACTGCAGTAGAGGCACtttatggtcataatatatgtacTACCTTTGAAGTCTTCTTCaaatattatgacagaacaaTAGCTGCCCTATAAAAACAGTGTCTGATATTATATCTATGTTTTTTTGgcctttgcctgtttgatgtttGTTTTGTGTACCTGAGTGGACTTGATAAGAATTTTACAATACCTGGATTTTAGAGTGTAAGATCTGATGTGTTTATTTATGAAATGACTGAATGCCGTTTGGTGTTTGGGTGTGTCCATGCTGGGAAGTACAACTCACTTCATACAAATGGCTTTGTTGGATTTTTACAAATACCATTTTCACCAATTTGGAAGTTATATCCCAGAACTCTATGTCAAATAAGTCCACACCGCAAATCCAATCTGAATGTGTGTTTTATACAAATTAAATAACTTTAAAAAAGAATCATTTGAGTATAACCACTATCTGTGTCCTTGATGGTGTAGTTTGTCTTTTTCCCCCTGCTGTATTAATGACATGTTTTGGGGGACACCGACCGTGCATAATGATGTCAGATATGCACTTAATTGCCCAGCATTGTCATAAATTATTATTGTAGAATAAATGGTGAAGGTTTTAATTGGAACAGGAa
>XM_036934965.1
TTCCCAACAAGGATATCCACACACGAGTGTAAACTTTCACCTCATCTCACCCCACATCTTTAGCATTAGTCTCTTTTATCGCCAAATTACAAGGACATGTGCATATACTACAGTGATGTTTCTGGTGGTTGTTCTGTGAGCGCTTTGCTGAAGCTGAGAAGGATCCACTCTGAAGCAGTGTCTGTAACGAGCCATCATGGTCCGCCTCACCATGGATCTGATTGCCAAATCCAGCAACCATTTCAAAAACAAGAGAAGCTACTCCCTCCCAAAGTACCTCAAGAAACTCACTCATCTGAACTTCTCCAACAGGAACATAGAGGACATTGACGATCTCTCCATGTGCAGAAATCTCACAGTCCTCTACCTGTACGACAATCAGATCAGCCAGATCTGCAACCTGGGTTTTGCCTCCAACCTCACTCACCTATACATGCAGAACAACAACATCACTCACATAGATAACCTCTCCGGCCTGCAGAAGCTCTCCAAACTGTACCTGGGGGGAAACAGCATCACGGTGGTGGAGGGGTTAGAGGAGCTGGGGGAGCTGAAGGAGCTCCACATGGAGGGCCAGAGACTCCCCAGTGGAGAGAAGCTGCTCTTTGACCCCAggactctcctctccctcgctGAATCTCTAGGTGTCTTGAATATCAATAAGAACAACATAGATGATGTCAGAGATCTTGCCGTTCTAAAGAAACTCACACATTTCTTTGCTGCAGACAACCAGCTACAGGACATGCAGGATATAGAGTTGGTGTTCAGCCAATGGCCTCAGCTGCATCGAATGGATTTGAGTGGAAATCCTGTGTGCCACAAACCCAAGTACAGAGACAGGCTGATAACTGTGTGCAGAAGCCTGAACGAACTTGATGGGAAGGAAATTAATGAGTTGTCCAGGCAGTTCCTGATTAACTGGAAAGCGTCGAAAGACGCCAAGAAAAAACTGAAAGATGAAAGAATCATGACAGGCCAGATCACCTATCCCTTTACTGCAGACTTCCACATGGGCCCCCATCCTTCATCCAAATATAACTATGCCAACGTCCTGGGAAAGAGGAATCCTCCGGGGTGTGGGAGACCCAGCAGGAAGGTCCGCTCAGAACACTCACAACTGGACAGCGCAGCAATGAGgCCACGGAACGTGAAGATCCCAGTGAGTGCGGGGCTGCTTAGTGATGTGGCCGACAATGCTAATGTCTGCGGCCTGTAAGACGGACATGCCAGCTCTGCTAACACACATTCACTCTGGTGACCCTCTCACATACAGTCTGGTgaccctctaacacacacacacataatatacacTCTGGTgaccctctaacacacacacacacataatatacacTCTGGTGACCCTCTCACATACACTCTGGTgaccctctaacacacacacacacacataatatacacTCTGGTgaccctctaacacacacacacacacataatatacacTCTGGTGACCCTCTCACATACACTCTGGtgaccctctcacacacacacacacacacataatatacacTCTGGTGACCCTCTCACGCCTAAACTTTACCTTACACATAACACATagccagtgcttgacttgggcaggagctcactagAGCTGAGTACCAGCACCTAAAATGTTCTACTGATTGAGCTCCTGCatctcttatagaatattaactAGAAACTATTGTGGAACTTCTGCAACTAAATATAAACAGTTCCCGGGACCCAAAATGATTACCGGCACCTATtccagtccaagtcaagcactgcacaTAACCTCCCACTGCTATCACCACACATCAGGGGTGGACCTGACCCCTGACACACTCAATACGAAAGAGTCTACACTATGGTCTGTCACTGTCAGGGACTGATGGACTGCAGTAGAGGCACtttatggtcataatatatgtacTACCTTTGAAGTCTTCTTCaaatattatgacagaacaaTAGCTGCCCTATAAAAACAGTGTCTGATATTATATCTATGTTTTTTTGgcctttgcctgtttgatgtttGTTTTGTGTACCTGAGTGGACTTGATAAGAATTTTACAATACCTGGATTTTAGAGTGTAAGATCTGATGTGTTTATTTATGAAATGACTGAATGCCGTTTGGTGTTTGGGTGTGTCCATGCTGGGAAGTACAACTCACTTCATACAAATGGCTTTGTTGGATTTTTACAAATACCATTTTCACCAATTTGGAAGTTATATCCCAGAACTCTATGTCAAATAAGTCCACACCGCAAATCCAATCTGAATGTGTGTTTTATACAAATTAAATAACTTTAAAAAAGAATCATTTGAGTATAACCACTATCTGTGTCCTTGATGGTGTAGTTTGTCTTTTTCCCCCTGCTGTATTAATGACATGTTTTGGGGGACACCGACCGTGCATAATGATGTCAGATATGCACTTAATTGCCCAGCATTGTCATAAATTATTATTGTAGAATAAATGGTGAAGGTTTTAATTGGAACAGGAa
>XM_036934966.1
TTCCCAACAAGGATATCCACACACGAGTGTAAACTTTCACCTCATCTCACCCCACATCTTTAGCATTAGTCTCTTTTATCGCCAAATTACAAGGACATGTGCATATACTACAGTGCTAGTTCATGTGTTTCCCTTGTTCAGATGTTTCTGGTGGTTGTTCTGTGAGCGCTTTGCTGAAGCTGAGAAGGATCCACTCTGAAGCAGTGTCTGTAACGAGCCATCATGGTCCGCCTCACCATGGATCTGATTGCCAAATCCAGCAACCATTTCAAAAACAAGAGAAGCTACTCCCTCCCAAAGTACCTCAAGAAACTCACTCATCTGAACTTCTCCAACAGGAACATAGAGGACATTGACGATCTCTCCATGTGCAGAAATCTCACAGTCCTCTACCTGTACGACAATCAGATCAGCCAGATCTGCAACCTGGGTTTTGCCTCCAACCTCACTCACCTATACATGCAGAACAACAACATCACTCACATAGATAACCTCTCCGGCCTGCAGAAGCTCTCCAAACTGTACCTGGGGGGAAACAGCATCACGGTGGTGGAGGGGTTAGAGGAGCTGGGGGAGCTGAAGGAGCTCCACATGGAGGGCCAGAGACTCCCCAGTGGAGAGAAGCTGCTCTTTGACCCCAggactctcctctccctcgctGAATCTCTAGGTGTCTTGAATATCAATAAGAACAACATAGATGATGTCAGAGATCTTGCCGTTCTAAAGAAACTCACACATTTCTTTGCTGCAGACAACCAGCTACAGGACATGCAGGATATAGAGTTGGTGTTCAGCCAATGGCCTCAGCTGCATCGAATGGATTTGAGTGGAAATCCTGTGTGCCACAAACCCAAGTACAGAGACAGGCTGATAACTGTGTGCAGAAGCCTGAACGAACTTGATGGGAAGGAAATTAATGAGTTGTCCAGGCAGTTCCTGATTAACTGGAAAGCGTCGAAAGACGCCAAGAAAAAACTGAAAGATGAAAGAATCATGACAGGCCAGATCACCTATCCCTTTACTGACTTCCACATGGGCCCCCATCCTTCATCCAAATATAACTATGCCAACGTCCTGGGAAAGAGGAATCCTCCGGGGTGTGGGAGACCCAGCAGGAAGGTCCGCTCAGAACACTCACAACTGGACAGCGCAGCAATGAGgCCACGGAACGTGAAGATCCCAGTGAGTGCGGGGCTGCTTAGTGATGTGGCCGACAATGCTAATGTCTGCGGCCTGTAAGACGGACATGCCAGCTCTGCTAACACACATTCACTCTGGTGACCCTCTCACATACAGTCTGGTgaccctctaacacacacacacataatatacacTCTGGTgaccctctaacacacacacacacataatatacacTCTGGTGACCCTCTCACATACACTCTGGTgaccctctaacacacacacacacacataatatacacTCTGGTgaccctctaacacacacacacacacataatatacacTCTGGTGACCCTCTCACATACACTCTGGtgaccctctcacacacacacacacacacataatatacacTCTGGTGACCCTCTCACGCCTAAACTTTACCTTACACATAACACATagccagtgcttgacttgggcaggagctcactagAGCTGAGTACCAGCACCTAAAATGTTCTACTGATTGAGCTCCTGCatctcttatagaatattaactAGAAACTATTGTGGAACTTCTGCAACTAAATATAAACAGTTCCCGGGACCCAAAATGATTACCGGCACCTATtccagtccaagtcaagcactgcacaTAACCTCCCACTGCTATCACCACACATCAGGGGTGGACCTGACCCCTGACACACTCAATACGAAAGAGTCTACACTATGGTCTGTCACTGTCAGGGACTGATGGACTGCAGTAGAGGCACtttatggtcataatatatgtacTACCTTTGAAGTCTTCTTCaaatattatgacagaacaaTAGCTGCCCTATAAAAACAGTGTCTGATATTATATCTATGTTTTTTTGgcctttgcctgtttgatgtttGTTTTGTGTACCTGAGTGGACTTGATAAGAATTTTACAATACCTGGATTTTAGAGTGTAAGATCTGATGTGTTTATTTATGAAATGACTGAATGCCGTTTGGTGTTTGGGTGTGTCCATGCTGGGAAGTACAACTCACTTCATACAAATGGCTTTGTTGGATTTTTACAAATACCATTTTCACCAATTTGGAAGTTATATCCCAGAACTCTATGTCAAATAAGTCCACACCGCAAATCCAATCTGAATGTGTGTTTTATACAAATTAAATAACTTTAAAAAAGAATCATTTGAGTATAACCACTATCTGTGTCCTTGATGGTGTAGTTTGTCTTTTTCCCCCTGCTGTATTAATGACATGTTTTGGGGGACACCGACCGTGCATAATGATGTCAGATATGCACTTAATTGCCCAGCATTGTCATAAATTATTATTGTAGAATAAATGGTGAAGGTTTTAATTGGAACAGGAa

Function

symbol description
ppp1r42 Predicted to enable actin binding activity; dynein complex binding activity; and tubulin binding activity. Predicted to be located in centrosome and manchette. Orthologous to human PPP1R42 (protein phosphatase 1 regulatory subunit 42).

NR:

description
protein phosphatase 1 regulatory subunit 42 isoform X2

GO: NA

KEGG:

id description
K17579 PPP1R42, LRRC67; protein phosphatase 1 regulatory subunit 42

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934964.1 False 2517 mRNA 0.45 9 14645642 14659439
XM_036934965.1 False 2491 mRNA 0.45 9 14645642 14659439
XM_036934966.1 True 2514 mRNA 0.45 9 14645642 14659439

Neighbor

gene id symbol gene type direction distance location
csn5 csn5 coding upstream 3018 14638259 ~ 14642624 (+)
LOC110535318 LOC106579520 coding upstream 33067 14515936 ~ 14612575 (+)
cpa6 cpa6 coding upstream 132432 14468990 ~ 14513210 (+)
emc9 LOC106579550 coding upstream 211834 14425465 ~ 14433808 (+)
si:ch211-217a12.1 LOC106579549 coding upstream 224289 14406010 ~ 14421353 (+)
LOC110535321 LOC106579524 coding downstream 846 14660285 ~ 14663560 (+)
LOC110535322 LOC106579526 coding downstream 6228 14665667 ~ 14715423 (+)
crf crf coding downstream 133756 14793195 ~ 14794694 (+)
trnay-gua-3 NA coding downstream 171337 14830776 ~ 14830861 (+)
LOC110535327 LOC106579529 coding downstream 181214 14840653 ~ 14882192 (+)
G946955 LOC106579521 non-coding upstream 30464 14613468 ~ 14615178 (+)
G946957 NA non-coding upstream 50614 14567193 ~ 14595028 (+)
G946998 NA non-coding upstream 64069 14580554 ~ 14581573 (+)
G946951 NA non-coding upstream 131815 14513621 ~ 14513827 (+)
G947048 NA non-coding downstream 36674 14696113 ~ 14696330 (+)
G947057 NA non-coding downstream 59009 14718448 ~ 14718683 (+)
G947059 NA non-coding downstream 62527 14721966 ~ 14722170 (+)
G947207 NA non-coding downstream 82912 14742351 ~ 14742560 (+)
G946999 NA other upstream 61593 14582543 ~ 14584049 (+)
G946692 NA other upstream 243998 14401254 ~ 14401644 (+)
G946690 NA other upstream 245369 14399862 ~ 14400273 (+)
G946642 LOC106590417 other upstream 316306 14318665 ~ 14329336 (+)
G946643 NA other upstream 327019 14318008 ~ 14318623 (+)
G947301 LOC106590396 other downstream 227175 14886614 ~ 14887282 (+)
spata13 LOC106579541 other downstream 625740 15285042 ~ 15320246 (+)
LOC110535338 LOC106579503 other downstream 778242 15375660 ~ 15478222 (+)
rnf6 LOC106579512 other downstream 928391 15587284 ~ 15593900 (+)

Expression


Co-expression Network