LOC110535321 (LOC106579524)


Basic Information

Item Value
gene id LOC110535321
gene name LOC106579524
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14660285 ~ 14663560 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620247.2
GGTTTTGGGAGAAGTACCGTCCCCCAAAATTTGTTTGCTAGAAGAAAAACGTCTCCGGCGTTGAAAAGaggtctctccactctccccttcGACAGAAACATGTTGCGAAAGGGAAAAGAGCAGTAAGTCTCTCCCACTGGCAGGGAGTCTTAAGGGCTTGTGATTAATTACTCTGGAGTGAAAAAGTTGTCAGCTCTTTGTGTATGCAATAAATTAGAGGCTCCTCAGGTGAGCGCTACGTACGTGGACATCCCCACTGCGCATCTTCTTCCACGACCGCGCCTCTTTATAAAGATTATCCGGACTTGGAGCGGCACGACAACTTTTCTCCATCTCGTATTGGAGCAGCAGTGGAGTCTGTGGTGCACTATAGATTCTCTTCGCATTGCCTTGATGTCGTTACTCAAGACAAAGCTGTTGGGTACATTTGAAGTTTGTTTAGGAATTAGACATCTGGAAATGTACATTCATCAACAAGACATTTGTTACCCGTCAGGTTAATAAGTGCTCCCTATGGTTGGAAGACAGACGATCCGTATGGATAGTGGAAATGGCCCAGTGACAGTTATGGATGAGAGTCCCACAtctagccccagccccagtcctgACATGCTGACCACCGACAGTCGGCGTCCAGAGGCCCTGCAGCTCTCCAGGGTGGTCCAGGCCGGTGGGCTCTGTGGCAGAGGACGGCCGGCAGCAACCAACGCAGCGCGGGAGAGGAGTCGAGTGCAGACCCTGAGAAGCGCGTTCCTGGAGTTACAGAGGACTCTGCCGTCGGTGCCACCGGACACCAAACTGTCCAAGCTCGACGTGTTGATTTTGGCCACCACGTACATTGCCCATCTGACTCAGACCTTGcaagaggaagggatggatgagGGAGATAGCACTAGACAAACAGAGGCCTTACGCTCGCTGAAAGGTGATGGTTACCTGCACCCTGTGAAAAAGTGGCCGATGCGATCCAGGTTATACGTCGGAGCCAGCGGTCAGTTTCTGAACAATTCAAAACAGACAGAAAATCGAGGTGAATCATCGTCAACCTCAAGGACATAAATCTTTCCATTGCATAAGGAACTTCTCATTCAGACGACCATTAATTATGAAGACTCTTTCAGCAGAATCCACCCATGAGGACTTTTGAAATGAATAGCAGACCATGGTTCGTCGCCTGACATTATAATTTTTATTCATCAAACAATTGAAGTATCTGCTTTTGACGTTTCATATCATGTAAAGGGAGCAGTCACGAGACAGTCAACTCTTTCAATTGTAGGAAACACATTGTAAATTAATATATTATGGGATGTATGTATATAACATTTGAGAAAGCCTAAATATTGTTTCTCTGTTGTTATTTTGGCCTTGCTCTGCTCTGTTTTCTGCAGTTATGTACTTGTTGGAGGTATTACCGTGTATACTTTTATTTTAAATTCCATGTGTTGGGTAATGATCTTTCGGGCTTGACTTGTTGGCTATGCACTTTCAGTTAAAACATTTGCACTAAATGCATGTGTGAATAACTTAACATCTGTCATGTGAAGTGGTCTGTCAGAATCTCAACAATGGTAGGAGCCTCTTCATCTCCCCTTCTTTCTTACGGGAATGGTTGTTTATGTGTTTGTTGATAATGGCTTGAGAAATAAAAAGAATGACATGTCTCCCACTCCGTAGGTTGTAAATACGTTTACTGAGATGTATTAGTTGTAAGTGAATAAACATGTTATCTCATTGAAGACAagctatatattttaacaatcaaGAGGGATTCCATTTTATTATTTGCCTAAAAAGGAATTATGAGTAAACATTCTTTGGCAATATGACTTTTTTTTTGCATGCATGTGCTGACTCAGATAAATATATTACACtggaaaaaaataaataga
>XM_021620246.2
TTTGGGAGAAGTACCGTCCCCCAAAATTTGTTTGCTAGAAGAAAAACGTCTCCGGCGTTGAAAAGaggtctctccactctccccttcGACAGAAACATGTTGCGAAAGGGAAAAGAGCAGTAAGTCTCTCCCACTGGCAGGGAGTCTTAAGGGCTTGTGATTAATTACTCTGGAGTGAAAAAGTTGTCAGCTCTTTGTGTATGCAATAAATTAGAGGCTCCTCAGGTGAGCGCTACGTACGTGGACATCCCCACTGCGCATCTTCTTCCACGACCGCGCCTCTTTATAAAGATTATCCGGACTTGGAGCGGCACGACAACTTTTCTCCATCTCGTATTGGAGCAGCAGTGGAGTCTGTGGTGCACTATAGATTCTCTTCGCATTGCCTTGATGTCGTTACTCAAGACAAAGCTGTTGGGTACATTTGAAGGTTAATAAGTGCTCCCTATGGTTGGAAGACAGACGATCCGTATGGATAGTGGAAATGGCCCAGTGACAGTTATGGATGAGAGTCCCACAtctagccccagccccagtcctgACATGCTGACCACCGACAGTCGGCGTCCAGAGGCCCTGCAGCTCTCCAGGGTGGTCCAGGCCGGTGGGCTCTGTGGCAGAGGACGGCCGGCAGCAACCAACGCAGCGCGGGAGAGGAGTCGAGTGCAGACCCTGAGAAGCGCGTTCCTGGAGTTACAGAGGACTCTGCCGTCGGTGCCACCGGACACCAAACTGTCCAAGCTCGACGTGTTGATTTTGGCCACCACGTACATTGCCCATCTGACTCAGACCTTGcaagaggaagggatggatgagGGAGATAGCACTAGACAAACAGAGGCCTTACGCTCGCTGAAAGGTGATGGTTACCTGCACCCTGTGAAAAAGTGGCCGATGCGATCCAGGTTATACGTCGGAGCCAGCGGTCAGTTTCTGAACAATTCAAAACAGACAGAAAATCGAGGTGAATCATCGTCAACCTCAAGGACATAAATCTTTCCATTGCATAAGGAACTTCTCATTCAGACGACCATTAATTATGAAGACTCTTTCAGCAGAATCCACCCATGAGGACTTTTGAAATGAATAGCAGACCATGGTTCGTCGCCTGACATTATAATTTTTATTCATCAAACAATTGAAGTATCTGCTTTTGACGTTTCATATCATGTAAAGGGAGCAGTCACGAGACAGTCAACTCTTTCAATTGTAGGAAACACATTGTAAATTAATATATTATGGGATGTATGTATATAACATTTGAGAAAGCCTAAATATTGTTTCTCTGTTGTTATTTTGGCCTTGCTCTGCTCTGTTTTCTGCAGTTATGTACTTGTTGGAGGTATTACCGTGTATACTTTTATTTTAAATTCCATGTGTTGGGTAATGATCTTTCGGGCTTGACTTGTTGGCTATGCACTTTCAGTTAAAACATTTGCACTAAATGCATGTGTGAATAACTTAACATCTGTCATGTGAAGTGGTCTGTCAGAATCTCAACAATGGTAGGAGCCTCTTCATCTCCCCTTCTTTCTTACGGGAATGGTTGTTTATGTGTTTGTTGATAATGGCTTGAGAAATAAAAAGAATGACATGTCTCCCACTCCGTAGGTTGTAAATACGTTTACTGAGATGTATTAGTTGTAAGTGAATAAACATGTTATCTCATTGAAGACAagctatatattttaacaatcaaGAGGGATTCCATTTTATTATTTGCCTAAAAAGGAATTATGAGTAAACATTCTTTGGCAATATGACTTTTTTTTTGCATGCATGTGCTGACTCAGATAAATATATTACACtggaaaaaaataaataga

Function

NR:

description
transcription factor 24-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620247.2 False 1892 mRNA 0.44 3 14660285 14663560
XM_021620246.2 True 1826 mRNA 0.44 3 14660288 14663560

Neighbor

gene id symbol gene type direction distance location
ppp1r42 ppp1r42 coding upstream 846 14645642 ~ 14659439 (+)
csn5 csn5 coding upstream 17661 14638259 ~ 14642624 (+)
LOC110535318 LOC106579520 coding upstream 47710 14515936 ~ 14612575 (+)
cpa6 cpa6 coding upstream 147075 14468990 ~ 14513210 (+)
emc9 LOC106579550 coding upstream 226477 14425465 ~ 14433808 (+)
LOC110535322 LOC106579526 coding downstream 2107 14665667 ~ 14715423 (+)
crf crf coding downstream 129635 14793195 ~ 14794694 (+)
trnay-gua-3 NA coding downstream 167216 14830776 ~ 14830861 (+)
LOC110535327 LOC106579529 coding downstream 177093 14840653 ~ 14882192 (+)
LOC110535331 LOC106579535 coding downstream 241868 14905428 ~ 14918163 (+)
G946955 LOC106579521 non-coding upstream 45107 14613468 ~ 14615178 (+)
G946957 NA non-coding upstream 65257 14567193 ~ 14595028 (+)
G946998 NA non-coding upstream 78712 14580554 ~ 14581573 (+)
G946951 NA non-coding upstream 146458 14513621 ~ 14513827 (+)
G947048 NA non-coding downstream 32553 14696113 ~ 14696330 (+)
G947057 NA non-coding downstream 54888 14718448 ~ 14718683 (+)
G947059 NA non-coding downstream 58406 14721966 ~ 14722170 (+)
G947207 NA non-coding downstream 78791 14742351 ~ 14742560 (+)
G946999 NA other upstream 76236 14582543 ~ 14584049 (+)
G946692 NA other upstream 258641 14401254 ~ 14401644 (+)
G946690 NA other upstream 260012 14399862 ~ 14400273 (+)
G946642 LOC106590417 other upstream 330949 14318665 ~ 14329336 (+)
G946643 NA other upstream 341662 14318008 ~ 14318623 (+)
G947301 LOC106590396 other downstream 223054 14886614 ~ 14887282 (+)
spata13 LOC106579541 other downstream 621619 15285042 ~ 15320246 (+)
LOC110535338 LOC106579503 other downstream 774121 15375660 ~ 15478222 (+)
rnf6 LOC106579512 other downstream 924270 15587284 ~ 15593900 (+)

Expression


Co-expression Network