LOC110535327 (LOC106579529)


Basic Information

Item Value
gene id LOC110535327
gene name LOC106579529
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14840653 ~ 14882192 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620256.2
ttttttttatttgaattttgATCTGGATCCAGCTCTGACTTTGTTCAATGGAAGTATGTTACCAGCTGCCGGTTTTGCCTCTAGACAGGCCGGTTCCTAAGCATGTCCTCAGCCGGAGAGGAGCCATCAGTTTCAGCTCCAGCTCGTCTCTCTTCGGCGCTCCTGATCCAAGACAGTTGTCTCAGagaCGAGGGGCCATCTCTTATGACAGCTCAGATCAGACCGCTCTGTACATTCGTATGCTCGGAGATGTGAGAGTGAGAAGTCAGGTAGGATTTGACCCAGAAGGAAAAGGTTCCTACTCGTACCTGTGCATCGACTTCCGCACCCTACACTCCTGCTCAGACTCTAGTCTTATCCCTGATCCTGGCTTCAGTTCGGCTGGGCCTGTGTCTGGCAGGAGGCTCCGCAGACTGCTCAGCTTCCAGAGGTACCTGCACTCCTCCCGTCTGCTGCGGGGAACACCCCACCTCAACCCCCTCCACATCCTGGATGAGGACTACACCGGACAGGCCAAGTGTATGCTGGAAAGGGTCGCGACCTGGAATTTCGACATTTTCCTCTATGACAGATTAACCAATGGAAACAGCCTGGTGACGCTGACCTTTCACCTCCTTAACCAGTATGGTCTGTTGGAGCTGTTTCAGCTGGACATGGTAAAGCTGTGGCGCTTCCTGGTCATGGTGCAGGAAGACTACCACAGTCTCAACCCCTACCACAACGCTGTGCACGCCGCTGACGTCACGCAGGCCATGTACTGTTACCTGCGAGAACCCAAGCTGGCCAAGTCCCTGACGTCCTGTGACATCCTCCTGGGCCTGTTGGCAGCCGCCACTCATGACCTGGACCACCCGGGAGTCAACCAGCCCTTCCTCATCAAGACCAACCACTACCTGGCCAAGCTCTACAGGAACTCCTCTGTTCTGGAGAACCATCACTGGAGGTCTGCAGTAGGTCTGCTGAGAGAGACCGGCCTGTTCTCCCACCTGCCTGCTGAGGACGGGCTGAAGATGGAGCATCAACTGGGTTCTCTTATCCTAGCCACTGACATCAGCAGACAGAACGAGTACCTGGGGAAGTTCAGGACACACCTGGACCAGGATGACCTGTACCTGAGCAACGCCAGCCACCGACACTTCATCCTCCAGATGGCTCTGAAGTGTGCGGACATCTGCAACCCCTGCAGACCCTGGGAGCTGAGCAAACAGTGGAGTGAGAAAGTGACAGAAGAGTTCTTCCACCAAGGAGACATTGAGAAGAAGCACCGACTTGAAGTCAGTCCACTGTGTGATAGCCAGAGTAACTCCATGGCAAACATTCAAATTGGTTTCATGACGTACGTGGTGGAGCCTTTGTTTGCTGAGTGGGGCCGGTTCTCTGACACACGTCTGTCCCAGACCATGCTGGGCCACCTGGGGCTGAACAAGGCCAGCTGGGGTGGGTTAGTACAGCAGGAGGGGTTCTCTAGCCCCGAGGAGCTGGAACCTAGCAGCCCTGCCTTCTTCACCATGTCAACGCCCGCCGTCACCGAGTCAGAACCAGAGTCTGCCTCTGCTGCGGAACCCATAGCTGTCACCATGGCAACAGCCACAGGAGAAACCAACTACAAAGAAATACCTCAGGGAAGCAAAGAGTCCTGACACTCCATGTTTGCCCTTAGaatcctgacccctgacccttaaCCGCTAGCCTCGACACACACTggggagagggtgggaggagCGGGGTATGGCATTTAACCCCCCCCTACTCCCACTGCCCCACCAGAACAGTACTCATGTTTTTGTTGCCTTTGCCTCCCATATTTGACAAACcacagattttatttatttattttttaattcctTTCCTTGACATACATAGATACTGCTGCTGTATTTAGTATTTTTATTggcttattttatttatttatttgtcctCTGTAGTTTTAGCCTTACTAATGTAACACCACCATTTTGAAGGCGAAGTGCCATTTTCAAAACAAAGTTCTGTAGGAGGATTTGAAACACACTGAGTATTGAAGAGATGCTCTCTAAAGACCGCACAGAGATGCCGTGATGTGTGTTGATGCGTTTGTAAGGAATCTTCTTCCTGAAGATAATGTGACAAGCCCAGTCCTTTTGCTGCCTCTATGAAGACTGTTTACAGATGTCTTGTTTGTTTGTCCTTGTTGTCCATTCGAAATGAATCATTATGGTTCTGCGATATGCCTTCTAAGCACAGATGCGAAGAACCACTAGTGTTTGAATTGTCGGCACACTGCTGAAGttgactgatacacacacacacacaccagatgccATAAAGAAACACCCCCTGTGCTCCATtgtattcatttcttccttgcaCTGCCAAAAGACTGAAATATTGGACACAACTTCTGTTCTGAGAGAACTTGGGTTAGACAGAATGGTATTCTAGAATGTAACTAATATGAAGAAGCATTGTTGTCAGTGACTGTAGAGAATGCATGACCTCTAACCCTGGACCAGTCACTGAGGCATAGTACACACACCCCATCTGAAAACTCACAACACCACTCACGCAGAGTGGACTGTAGGAGGGAAGTTTACTGTGGTTTAGCTACCTGTGAAACAGCTGTTTACTTCTACTGAATGGGACTCTCTCAGAATGTCTCTCATTATCATCATAGCCACATGCAACCTAGGACTGCTGTACTGATGCCTTATAACTATGCACACTGCGCTAAGTGACCAAACCAGCTCCCTACCACTAGTTCTTCTAGTAATCTCATGAAGTACATCGTGTGCTTGTCCTCTTAATGCACTGTCTGATTTTCTTTTGcctttttgtgaggaaaaactgAACTCAAACACATTCTGTATATAAacgtttttagttttttttacattccatctccatttatacatttttttatttttattctgtagACTGCACAAAGATTTTAATAACAGGTGCTTTTTCCTATTTTAGCTGATTTTTAGTATTTTCGCTGTAAGACTGTTTACAATTTGTTGCGACAGCCATTTTGGGAAGAAGACTTGTCAAGCCATTTTGTACAGGATTTGCCGTGTTGACCTTTTGATACATGCTTGTTGCCGTTTACATTTTGATAAATAAAACAAGTTGACATGAA
>XM_021620258.2
ttttttttatttgaattttgATCTGGATCCAGCTCTGACTTTGTTCAATGGAAGTATGTTACCAGCTGCCGGTTTTGCCTCTAGACAGGCCGGTTCCTAAGCATGTCCTCAGCCGGAGAGGAGCCATCAGTTTCAGCTCCAGCTCGTCTCTCTTCGGCGCTCCTGATCCAAGACAGTTGTCTCAGagaCGAGGGGCCATCTCTTATGACAGCTCAGATCAGACCGCTCTGTACATTCGTATGCTCGATGTGAGAGTGAGAAGTCAGGTAGGATTTGACCCAGAAGGAAAAGGTTCCTACTCGTACCTGTGCATCGACTTCCGCACCCTACACTCCTGCTCAGACTCTAGTCTTATCCCTGATCCTGGCTTCAGTTCGGCTGGGCCTGTGTCTGGCAGGAGGCTCCGCAGACTGCTCAGCTTCCAGAGGTACCTGCACTCCTCCCGTCTGCTGCGGGGAACACCCCACCTCAACCCCCTCCACATCCTGGATGAGGACTACACCGGACAGGCCAAGTGTATGCTGGAAAGGGTCGCGACCTGGAATTTCGACATTTTCCTCTATGACAGATTAACCAATGGAAACAGCCTGGTGACGCTGACCTTTCACCTCCTTAACCAGTATGGTCTGTTGGAGCTGTTTCAGCTGGACATGGTAAAGCTGTGGCGCTTCCTGGTCATGGTGCAGGAAGACTACCACAGTCTCAACCCCTACCACAACGCTGTGCACGCCGCTGACGTCACGCAGGCCATGTACTGTTACCTGCGAGAACCCAAGCTGGCCAAGTCCCTGACGTCCTGTGACATCCTCCTGGGCCTGTTGGCAGCCGCCACTCATGACCTGGACCACCCGGGAGTCAACCAGCCCTTCCTCATCAAGACCAACCACTACCTGGCCAAGCTCTACAGGAACTCCTCTGTTCTGGAGAACCATCACTGGAGGTCTGCAGTAGGTCTGCTGAGAGAGACCGGCCTGTTCTCCCACCTGCCTGCTGAGGACGGGCTGAAGATGGAGCATCAACTGGGTTCTCTTATCCTAGCCACTGACATCAGCAGACAGAACGAGTACCTGGGGAAGTTCAGGACACACCTGGACCAGGATGACCTGTACCTGAGCAACGCCAGCCACCGACACTTCATCCTCCAGATGGCTCTGAAGTGTGCGGACATCTGCAACCCCTGCAGACCCTGGGAGCTGAGCAAACAGTGGAGTGAGAAAGTGACAGAAGAGTTCTTCCACCAAGGAGACATTGAGAAGAAGCACCGACTTGAAGTCAGTCCACTGTGTGATAGCCAGAGTAACTCCATGGCAAACATTCAAATTGGTTTCATGACGTACGTGGTGGAGCCTTTGTTTGCTGAGTGGGGCCGGTTCTCTGACACACGTCTGTCCCAGACCATGCTGGGCCACCTGGGGCTGAACAAGGCCAGCTGGGGTGGGTTAGTACAGCAGGAGGGGTTCTCTAGCCCCGAGGAGCTGGAACCTAGCAGCCCTGCCTTCTTCACCATGTCAACGCCCGCCGTCACCGAGTCAGAACCAGAGTCTGCCTCTGCTGCGGAACCCATAGCTGTCACCATGGCAACAGCCACAGGAGAAACCAACTACAAAGAAATACCTCAGGGAAGCAAAGAGTCCTGACACTCCATGTTTGCCCTTAGaatcctgacccctgacccttaaCCGCTAGCCTCGACACACACTggggagagggtgggaggagCGGGGTATGGCATTTAACCCCCCCCTACTCCCACTGCCCCACCAGAACAGTACTCATGTTTTTGTTGCCTTTGCCTCCCATATTTGACAAACcacagattttatttatttattttttaattcctTTCCTTGACATACATAGATACTGCTGCTGTATTTAGTATTTTTATTggcttattttatttatttatttgtcctCTGTAGTTTTAGCCTTACTAATGTAACACCACCATTTTGAAGGCGAAGTGCCATTTTCAAAACAAAGTTCTGTAGGAGGATTTGAAACACACTGAGTATTGAAGAGATGCTCTCTAAAGACCGCACAGAGATGCCGTGATGTGTGTTGATGCGTTTGTAAGGAATCTTCTTCCTGAAGATAATGTGACAAGCCCAGTCCTTTTGCTGCCTCTATGAAGACTGTTTACAGATGTCTTGTTTGTTTGTCCTTGTTGTCCATTCGAAATGAATCATTATGGTTCTGCGATATGCCTTCTAAGCACAGATGCGAAGAACCACTAGTGTTTGAATTGTCGGCACACTGCTGAAGttgactgatacacacacacacacaccagatgccATAAAGAAACACCCCCTGTGCTCCATtgtattcatttcttccttgcaCTGCCAAAAGACTGAAATATTGGACACAACTTCTGTTCTGAGAGAACTTGGGTTAGACAGAATGGTATTCTAGAATGTAACTAATATGAAGAAGCATTGTTGTCAGTGACTGTAGAGAATGCATGACCTCTAACCCTGGACCAGTCACTGAGGCATAGTACACACACCCCATCTGAAAACTCACAACACCACTCACGCAGAGTGGACTGTAGGAGGGAAGTTTACTGTGGTTTAGCTACCTGTGAAACAGCTGTTTACTTCTACTGAATGGGACTCTCTCAGAATGTCTCTCATTATCATCATAGCCACATGCAACCTAGGACTGCTGTACTGATGCCTTATAACTATGCACACTGCGCTAAGTGACCAAACCAGCTCCCTACCACTAGTTCTTCTAGTAATCTCATGAAGTACATCGTGTGCTTGTCCTCTTAATGCACTGTCTGATTTTCTTTTGcctttttgtgaggaaaaactgAACTCAAACACATTCTGTATATAAacgtttttagttttttttacattccatctccatttatacatttttttatttttattctgtagACTGCACAAAGATTTTAATAACAGGTGCTTTTTCCTATTTTAGCTGATTTTTAGTATTTTCGCTGTAAGACTGTTTACAATTTGTTGCGACAGCCATTTTGGGAAGAAGACTTGTCAAGCCATTTTGTACAGGATTTGCCGTGTTGACCTTTTGATACATGCTTGTTGCCGTTTACATTTTGATAAATAAAACAAGTTGACATGAA
>XM_021620259.2
ttttttttatttgaattttgATCTGGATCCAGCTCTGACTTTGTTCAATGGAAGTATGTTACCAGCTGCCGGTTTTGCCTCTAGACAGGCCGGTTCCTAAGCATGTCCTCAGCCGGAGAGGAGCCATCAGTTTCAGCTCCAGCTCGTCTCTCTTCGGCGCTCCTGATCCAAGACAGTTGTCTCAGagaCGAGGGGCCATCTCTTATGACAGCTCAGATCAGACCGCTCTGTACATTCGTATGCTCGCCTGCTCAGACTCTAGTCTTATCCCTGATCCTGGCTTCAGTTCGGCTGGGCCTGTGTCTGGCAGGAGGCTCCGCAGACTGCTCAGCTTCCAGAGGTACCTGCACTCCTCCCGTCTGCTGCGGGGAACACCCCACCTCAACCCCCTCCACATCCTGGATGAGGACTACACCGGACAGGCCAAGTGTATGCTGGAAAGGGTCGCGACCTGGAATTTCGACATTTTCCTCTATGACAGATTAACCAATGGAAACAGCCTGGTGACGCTGACCTTTCACCTCCTTAACCAGTATGGTCTGTTGGAGCTGTTTCAGCTGGACATGGTAAAGCTGTGGCGCTTCCTGGTCATGGTGCAGGAAGACTACCACAGTCTCAACCCCTACCACAACGCTGTGCACGCCGCTGACGTCACGCAGGCCATGTACTGTTACCTGCGAGAACCCAAGCTGGCCAAGTCCCTGACGTCCTGTGACATCCTCCTGGGCCTGTTGGCAGCCGCCACTCATGACCTGGACCACCCGGGAGTCAACCAGCCCTTCCTCATCAAGACCAACCACTACCTGGCCAAGCTCTACAGGAACTCCTCTGTTCTGGAGAACCATCACTGGAGGTCTGCAGTAGGTCTGCTGAGAGAGACCGGCCTGTTCTCCCACCTGCCTGCTGAGGACGGGCTGAAGATGGAGCATCAACTGGGTTCTCTTATCCTAGCCACTGACATCAGCAGACAGAACGAGTACCTGGGGAAGTTCAGGACACACCTGGACCAGGATGACCTGTACCTGAGCAACGCCAGCCACCGACACTTCATCCTCCAGATGGCTCTGAAGTGTGCGGACATCTGCAACCCCTGCAGACCCTGGGAGCTGAGCAAACAGTGGAGTGAGAAAGTGACAGAAGAGTTCTTCCACCAAGGAGACATTGAGAAGAAGCACCGACTTGAAGTCAGTCCACTGTGTGATAGCCAGAGTAACTCCATGGCAAACATTCAAATTGGTTTCATGACGTACGTGGTGGAGCCTTTGTTTGCTGAGTGGGGCCGGTTCTCTGACACACGTCTGTCCCAGACCATGCTGGGCCACCTGGGGCTGAACAAGGCCAGCTGGGGTGGGTTAGTACAGCAGGAGGGGTTCTCTAGCCCCGAGGAGCTGGAACCTAGCAGCCCTGCCTTCTTCACCATGTCAACGCCCGCCGTCACCGAGTCAGAACCAGAGTCTGCCTCTGCTGCGGAACCCATAGCTGTCACCATGGCAACAGCCACAGGAGAAACCAACTACAAAGAAATACCTCAGGGAAGCAAAGAGTCCTGACACTCCATGTTTGCCCTTAGaatcctgacccctgacccttaaCCGCTAGCCTCGACACACACTggggagagggtgggaggagCGGGGTATGGCATTTAACCCCCCCCTACTCCCACTGCCCCACCAGAACAGTACTCATGTTTTTGTTGCCTTTGCCTCCCATATTTGACAAACcacagattttatttatttattttttaattcctTTCCTTGACATACATAGATACTGCTGCTGTATTTAGTATTTTTATTggcttattttatttatttatttgtcctCTGTAGTTTTAGCCTTACTAATGTAACACCACCATTTTGAAGGCGAAGTGCCATTTTCAAAACAAAGTTCTGTAGGAGGATTTGAAACACACTGAGTATTGAAGAGATGCTCTCTAAAGACCGCACAGAGATGCCGTGATGTGTGTTGATGCGTTTGTAAGGAATCTTCTTCCTGAAGATAATGTGACAAGCCCAGTCCTTTTGCTGCCTCTATGAAGACTGTTTACAGATGTCTTGTTTGTTTGTCCTTGTTGTCCATTCGAAATGAATCATTATGGTTCTGCGATATGCCTTCTAAGCACAGATGCGAAGAACCACTAGTGTTTGAATTGTCGGCACACTGCTGAAGttgactgatacacacacacacacaccagatgccATAAAGAAACACCCCCTGTGCTCCATtgtattcatttcttccttgcaCTGCCAAAAGACTGAAATATTGGACACAACTTCTGTTCTGAGAGAACTTGGGTTAGACAGAATGGTATTCTAGAATGTAACTAATATGAAGAAGCATTGTTGTCAGTGACTGTAGAGAATGCATGACCTCTAACCCTGGACCAGTCACTGAGGCATAGTACACACACCCCATCTGAAAACTCACAACACCACTCACGCAGAGTGGACTGTAGGAGGGAAGTTTACTGTGGTTTAGCTACCTGTGAAACAGCTGTTTACTTCTACTGAATGGGACTCTCTCAGAATGTCTCTCATTATCATCATAGCCACATGCAACCTAGGACTGCTGTACTGATGCCTTATAACTATGCACACTGCGCTAAGTGACCAAACCAGCTCCCTACCACTAGTTCTTCTAGTAATCTCATGAAGTACATCGTGTGCTTGTCCTCTTAATGCACTGTCTGATTTTCTTTTGcctttttgtgaggaaaaactgAACTCAAACACATTCTGTATATAAacgtttttagttttttttacattccatctccatttatacatttttttatttttattctgtagACTGCACAAAGATTTTAATAACAGGTGCTTTTTCCTATTTTAGCTGATTTTTAGTATTTTCGCTGTAAGACTGTTTACAATTTGTTGCGACAGCCATTTTGGGAAGAAGACTTGTCAAGCCATTTTGTACAGGATTTGCCGTGTTGACCTTTTGATACATGCTTGTTGCCGTTTACATTTTGATAAATAAAACAAGTTGACATGAA

Function

NR:

description
high affinity cAMP-specific 3',5'-cyclic phosphodiesterase 7A-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620256.2 False 3118 mRNA 0.48 12 14840653 14882192
XM_021620258.2 False 3115 mRNA 0.48 12 14840653 14882192
XM_021620259.2 True 3028 mRNA 0.48 11 14840653 14882192

Neighbor

gene id symbol gene type direction distance location
trnay-gua-3 NA coding upstream 9792 14830776 ~ 14830861 (+)
crf crf coding upstream 45959 14793195 ~ 14794694 (+)
LOC110535322 LOC106579526 coding upstream 125230 14665667 ~ 14715423 (+)
LOC110535321 LOC106579524 coding upstream 177093 14660285 ~ 14663560 (+)
ppp1r42 ppp1r42 coding upstream 181214 14645642 ~ 14659439 (+)
LOC110535331 LOC106579535 coding downstream 23236 14905428 ~ 14918163 (+)
LOC118937318 NA coding downstream 115687 14997879 ~ 15016727 (+)
abhd10b abhd10 coding downstream 387420 15269612 ~ 15277101 (+)
tagln3b tagln3 coding downstream 396282 15278474 ~ 15282213 (+)
LOC110536556 LOC106590436 coding downstream 401103 15283295 ~ 15284424 (+)
G947286 NA non-coding upstream 28110 14812331 ~ 14812543 (+)
G947283 NA non-coding upstream 31992 14808462 ~ 14808661 (+)
G947278 NA non-coding upstream 43922 14796443 ~ 14796731 (+)
G947254 NA non-coding upstream 63617 14774003 ~ 14777036 (+)
G947252 NA non-coding upstream 66811 14773369 ~ 14773842 (+)
G947302 NA non-coding downstream 7436 14889628 ~ 14890465 (+)
G947338 NA non-coding downstream 18461 14900653 ~ 14900869 (+)
G947277 NA non-coding downstream 36962 14919154 ~ 14919395 (+)
G947426 NA non-coding downstream 45311 14927503 ~ 14927739 (+)
G947438 NA non-coding downstream 53465 14935657 ~ 14935868 (+)
G946999 NA other upstream 256604 14582543 ~ 14584049 (+)
G946692 NA other upstream 439009 14401254 ~ 14401644 (+)
G946690 NA other upstream 440380 14399862 ~ 14400273 (+)
G946642 LOC106590417 other upstream 511317 14318665 ~ 14329336 (+)
G947301 LOC106590396 other downstream 4422 14886614 ~ 14887282 (+)
spata13 LOC106579541 other downstream 402987 15285042 ~ 15320246 (+)
LOC110535338 LOC106579503 other downstream 555489 15375660 ~ 15478222 (+)
rnf6 LOC106579512 other downstream 705638 15587284 ~ 15593900 (+)
atp8a2 LOC106579514 other downstream 769782 15594416 ~ 15660363 (+)

Expression


Co-expression Network