Gene
RNA
| Item | Value |
|---|---|
| gene id | mtfr1 |
| gene name | LOC106579534 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048575.1 |
| NCBI id | CM023229.2 |
| chromosome length | 86280908 |
| location | 14884317 ~ 14897579 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| unnamed protein product |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021620266.2 | False | 2906 | mRNA | 0.45 | 9 | 14884317 | 14897579 |
| TU1080269 | False | 2023 | TUCP | 0.41 | 4 | 14884335 | 14886724 |
| TU1080271 | True | 712 | lncRNA | 0.38 | 1 | 14891279 | 14891990 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110535328 | dnjc5 | coding | downstream | 43658 | 14830974 ~ 14840659 (-) |
| LOC110535326 | NA | coding | downstream | 58718 | 14815506 ~ 14825629 (-) |
| LOC110536555 | NA | coding | downstream | 73342 | 14797797 ~ 14810975 (-) |
| LOC110535325 | LOC106579528 | coding | downstream | 151287 | 14731383 ~ 14733030 (-) |
| sgk3 | LOC106579527 | coding | downstream | 188230 | 14673915 ~ 14696087 (-) |
| LOC110535332 | LOC106579536 | coding | upstream | 182945 | 15080524 ~ 15082767 (-) |
| LOC118937468 | NA | coding | upstream | 321427 | 15219006 ~ 15221030 (-) |
| LOC110535333 | LOC106590438 | coding | upstream | 353692 | 15251271 ~ 15268657 (-) |
| pan3 | pan3 | coding | upstream | 541836 | 15439415 ~ 15455911 (-) |
| pdx1 | pdx1 | coding | upstream | 582919 | 15480498 ~ 15485495 (-) |
| G947347 | NA | non-coding | downstream | 75573 | 14808409 ~ 14808744 (-) |
| G947344 | NA | non-coding | downstream | 78519 | 14805512 ~ 14805798 (-) |
| G947262 | NA | non-coding | downstream | 102923 | 14781113 ~ 14781394 (-) |
| G947242 | NA | non-coding | downstream | 115944 | 14768100 ~ 14768373 (-) |
| G947407 | NA | non-coding | upstream | 7989 | 14905568 ~ 14906913 (-) |
| G947439 | NA | non-coding | upstream | 38293 | 14935872 ~ 14936076 (-) |
| G947511 | NA | non-coding | upstream | 91237 | 14988816 ~ 14989049 (-) |
| G947547 | NA | non-coding | upstream | 123958 | 15021537 ~ 15021801 (-) |
| G947549 | NA | non-coding | upstream | 124494 | 15022073 ~ 15022498 (-) |
| ly86 | NA | other | downstream | 568631 | 14308595 ~ 14315733 (-) |
| G945345 | LOC105027308 | other | downstream | 2490179 | 12393397 ~ 12394138 (-) |
| LOC110536549 | LOC106579607 | other | downstream | 2525438 | 12348249 ~ 12366127 (-) |
| LOC110536548 | LOC106579654 | other | downstream | 3803800 | 11061866 ~ 11143146 (-) |
| G942483 | LOC106590343 | other | downstream | 4139640 | 10743314 ~ 10744677 (-) |
| G947750 | NA | other | upstream | 308852 | 15206431 ~ 15209597 (-) |
| G947894 | LOC106579543 | other | upstream | 468371 | 15365950 ~ 15366301 (-) |
| LOC110535357 | LOC106579444 | other | upstream | 903196 | 15800721 ~ 15810494 (-) |
| G947397 | NA | non-coding | downstream | 2974 | 14887845 ~ 14888305 (-) |
| mtfr1 | LOC106579534 | other | downstream | 4555 | 14884317 ~ 14897579 (-) |
